sci-biology/meme: Remove old

Package-Manager: Portage-2.3.3, Repoman-2.3.1

1 files changed, 0 insertions, 134 deletions

diff --git a/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch b/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch
deleted file mode 100644
index e84006295735..000000000000
--- a/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch
+++ /dev/null
@@ -1,134 +0,0 @@
- Makefile.am                                        |  6 +++---
- doc/Makefile.am                                    |  2 +-
- doc/examples/Makefile.am                           | 24 +++++++++++-----------
- .../Makefile.am                                    |  2 +-
- doc/examples/sample_opal_scripts/Makefile.am       |  2 +-
- doc/images/Makefile.am                             |  2 +-
- scripts/Makefile.am                                |  2 +-
- 7 files changed, 20 insertions(+), 20 deletions(-)
-
-diff --git a/Makefile.am b/Makefile.am
-index 4a69e34..842e33f 100644
---- a/Makefile.am
-+++ b/Makefile.am
-@@ -18,11 +18,11 @@ ARCHIVE_REVISION:
- install-data-hook: dbdir
- 
- dbdir:
--	mkdir -p $(MEME_DB)
-+	mkdir -p $(DESTDIR)$(MEME_DB)
- 
- install-data-local:
--	mkdir -p $(MEME_LOGS)
--	chmod a+w $(MEME_LOGS)
-+	mkdir -p $(DESTDIR)$(MEME_LOGS)
-+	chmod a+w $(DESTDIR)$(MEME_LOGS)
- 
- distdir = $(PACKAGE)_$(VERSION)
- 
-diff --git a/doc/Makefile.am b/doc/Makefile.am
-index e0d6af9..e7bcb4f 100644
---- a/doc/Makefile.am
-+++ b/doc/Makefile.am
-@@ -202,7 +202,7 @@ COMMON_DOC = \
- if WEBSITE
- MEME_DOC_DIR = $(WEBDIR)/doc
- else
--MEME_DOC_DIR = $(prefix)/doc
-+MEME_DOC_DIR = $(docdir)/html
- endif
- 
- memedocdir = $(MEME_DOC_DIR)
-diff --git a/doc/examples/Makefile.am b/doc/examples/Makefile.am
-index 12970b5..633492c 100644
---- a/doc/examples/Makefile.am
-+++ b/doc/examples/Makefile.am
-@@ -51,24 +51,24 @@ if WEBSITE
- exdir = $(WEBDIR)/examples
- other_exdir = $(WEBDIR)/doc/examples
- else
--exdir = $(prefix)/doc/examples
-+exdir = $(prefix)/share/meme/examples
- other_exdir = $(exdir)
- endif
- 
- ex_DATA = $(EXAMPLES)
- 
- install-data-hook:
--	tar xzvf centrimo_example_output_files.tgz -C $(other_exdir)
--	tar xzvf dreme_example_output_files.tgz -C $(other_exdir)
--	tar xzvf fimo_example_output_files.tgz -C $(other_exdir)
--	tar xzvf glam2_example_output_files.tgz -C $(other_exdir)
--	tar xzvf glam2scan_example_output_files.tgz -C $(other_exdir)
--	tar xzvf mast_example_output_files.tgz -C $(other_exdir)
--	tar xzvf mcast_example_output_files.tgz -C $(other_exdir)
--	tar xzvf meme_example_output_files.tgz -C $(other_exdir)
--	tar xzvf memechip_example_output_files.tgz -C $(other_exdir)
--	tar xzvf spamo_example_output_files.tgz -C $(other_exdir)
--	tar xzvf tomtom_example_output_files.tgz -C $(other_exdir)
-+	tar xzvf centrimo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf dreme_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf fimo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf glam2_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf glam2scan_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf mast_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf mcast_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf meme_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf memechip_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf spamo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
-+	tar xzvf tomtom_example_output_files.tgz -C $(DESTDIR)/$(other_exdir)
- 
- # If .svnignore file doesn't exist
- # create an empty one
-diff --git a/doc/examples/compute_prior_dist_example_output_files/Makefile.am b/doc/examples/compute_prior_dist_example_output_files/Makefile.am
-index 747028d..a358f58 100644
---- a/doc/examples/compute_prior_dist_example_output_files/Makefile.am
-+++ b/doc/examples/compute_prior_dist_example_output_files/Makefile.am
-@@ -22,7 +22,7 @@ EXAMPLES = \
- if WEBSITE
- exdir = $(WEBDIR)/doc/examples/compute_prior_dist_example_output_files
- else
--exdir = $(prefix)/doc/examples/compute_prior_dist_example_output_files
-+exdir = $(prefix)/share/meme/examples/compute_prior_dist_example_output_files
- endif
- 
- ex_DATA = $(EXAMPLES)
-diff --git a/doc/examples/sample_opal_scripts/Makefile.am b/doc/examples/sample_opal_scripts/Makefile.am
-index 3a638b3..30925bb 100644
---- a/doc/examples/sample_opal_scripts/Makefile.am
-+++ b/doc/examples/sample_opal_scripts/Makefile.am
-@@ -18,7 +18,7 @@ EXAMPLES = \
- if WEBSITE
- exdir = $(WEBDIR)/doc/examples/sample_opal_scripts
- else
--exdir = $(prefix)/doc/examples/sample_opal_scripts
-+exdir = $(prefix)/share/meme/examples/sample_opal_scripts
- endif
- 
- ex_DATA = $(EXAMPLES)
-diff --git a/doc/images/Makefile.am b/doc/images/Makefile.am
-index c879621..a4696cd 100644
---- a/doc/images/Makefile.am
-+++ b/doc/images/Makefile.am
-@@ -28,7 +28,7 @@ MEME_IMAGES = \
- if WEBSITE
- memeimgdir = $(WEBDIR)/doc/images
- else
--memeimgdir = $(prefix)/doc/images
-+memeimgdir = $(docdir)/html/images
- endif
- 
- memeimg_DATA = $(MEME_IMAGES)
-diff --git a/scripts/Makefile.am b/scripts/Makefile.am
-index 4143e46..8a5c021 100644
---- a/scripts/Makefile.am
-+++ b/scripts/Makefile.am
-@@ -8,7 +8,7 @@
- if WEBSITE
- MEME_DOC_DIR = $(WEBDIR)/doc
- else
--MEME_DOC_DIR = $(prefix)/doc
-+MEME_DOC_DIR = $(docdir)
- endif
- 
- ARCHIVE_REVISION = $(shell cat ../ARCHIVE_REVISION)