diff options
| author |   David Seifert <soap@gentoo.org> | 2017-02-25 17:14:33 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-02-25 17:14:33 +0100 |
| commit | 960abf9442aca3794235dc9f15e92005e9d0d77d (patch) | |
| tree | d20f7091fa1c3f63d61fd78242e28e9aabc0613f /sci-biology/recon/files | |
| parent | sci-biology/kalign: Modernise to EAPI 6 (diff) | |
| download | gentoo-960abf9442aca3794235dc9f15e92005e9d0d77d.tar.gz gentoo-960abf9442aca3794235dc9f15e92005e9d0d77d.tar.bz2 gentoo-960abf9442aca3794235dc9f15e92005e9d0d77d.zip | |
sci-biology/recon: Version bump to 1.08
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology/recon/files')
| -rw-r--r-- | sci-biology/recon/files/recon-1.08-buffer-overflow.patch | 11 | ||||
| -rw-r--r-- | sci-biology/recon/files/recon-1.08-perl-shebangs.patch | 19 |
2 files changed, 30 insertions, 0 deletions
diff --git a/sci-biology/recon/files/recon-1.08-buffer-overflow.patch b/sci-biology/recon/files/recon-1.08-buffer-overflow.patch new file mode 100644 index 000000000000..e6bf54e7c2f2 --- /dev/null +++ b/sci-biology/recon/files/recon-1.08-buffer-overflow.patch @@ -0,0 +1,11 @@ +--- a/src/eledef.c ++++ b/src/eledef.c +@@ -385,7 +385,7 @@ void ele_def(int method, FILE *frags, float cutoff, EPROT_t **all_epp, int *ecp, + + void img_charge(IPROT_t **shadow, int ct, FILE *input) { + int i=0, pos=0; +- char line[151]; ++ char line[256]; + int scan_flag; + MSP_t msp; + diff --git a/sci-biology/recon/files/recon-1.08-perl-shebangs.patch b/sci-biology/recon/files/recon-1.08-perl-shebangs.patch new file mode 100644 index 000000000000..769fe4a93c65 --- /dev/null +++ b/sci-biology/recon/files/recon-1.08-perl-shebangs.patch @@ -0,0 +1,19 @@ +Make Perl shebangs Prefix friendly +See also: https://blogs.gentoo.org/mgorny/2016/02/08/a-quick-note-on-portable-shebangs/ + +--- a/scripts/MSPCollect.pl ++++ b/scripts/MSPCollect.pl +@@ -1,4 +1,4 @@ +-#! /usr/bin/perl ++#!/usr/bin/env perl + + if (!@ARGV) { + die "usage: MSPCollect BLAST_output_file\n"; +--- a/scripts/recon.pl ++++ b/scripts/recon.pl +@@ -1,4 +1,4 @@ +-#! /usr/bin/perl ++#!/usr/bin/env perl + + $path = ""; + |