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authorDavid Seifert <soap@gentoo.org>2016-12-14 21:28:14 +0100
committerDavid Seifert <soap@gentoo.org>2016-12-14 21:32:45 +0100
commitda90f594219f91865c4310e86f154dbc7dd8d3cd (patch)
treedda641c87bf0c4cc1c63b18b6c14483590f87992 /sci-biology/seqan
parentmedia-tv/plex-media-server: adding "bindist" to 1.3.2 (diff)
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sci-biology/seqan: Add blocker for older SLOTs
Gentoo-bug: 602508 Package-Manager: portage-2.3.3
Diffstat (limited to 'sci-biology/seqan')
-rw-r--r--sci-biology/seqan/seqan-2.2.0-r1.ebuild (renamed from sci-biology/seqan/seqan-2.2.0.ebuild)40
1 files changed, 23 insertions, 17 deletions
diff --git a/sci-biology/seqan/seqan-2.2.0.ebuild b/sci-biology/seqan/seqan-2.2.0-r1.ebuild
index cac98d60febc..313186fefcdc 100644
--- a/sci-biology/seqan/seqan-2.2.0.ebuild
+++ b/sci-biology/seqan/seqan-2.2.0-r1.ebuild
@@ -12,33 +12,42 @@ DESCRIPTION="C++ Sequence Analysis Library"
HOMEPAGE="http://www.seqan.de/"
SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
-SLOT="$(get_version_component_range 1-2)"
+SLOT="0"
LICENSE="BSD GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse4_1 doc test"
-DEPEND="sys-libs/zlib
+RDEPEND="
app-arch/bzip2
+ sys-libs/zlib
+ !!sci-biology/seqan:2.0
+ !!sci-biology/seqan:2.1
+ !!sci-biology/seqan:2.2"
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
test? ( dev-python/nose[${PYTHON_USEDEP}] )"
-REQUIRED_USE="${PYTHON_REQUIRED_USE} cpu_flags_x86_sse4_1"
+REQUIRED_USE="doc? ( ${PYTHON_REQUIRED_USE} ) test? ( ${PYTHON_REQUIRED_USE} ) cpu_flags_x86_sse4_1"
S="${WORKDIR}"/${PN}-${PN}-v${PV}
src_prepare() {
+ seqan_major_ver=$(get_version_component_range 1)
+ seqan_majorminor_ver=$(get_version_component_range 1-2)
+
# install docs in proper Gentoo structure
sed -e "s#share/doc/seqan#share/doc/${PF}#" \
-e "s#\"share/doc/\${APP_NAME}\"#\"share/doc/${PF}/\${APP_NAME}\"#" \
-i util/cmake/SeqAnBuildSystem.cmake dox/CMakeLists.txt || die
# cmake module
- sed -e "s#find_path(_SEQAN_BASEDIR \"seqan\"#find_path(_SEQAN_BASEDIR \"seqan-${SLOT}\"#" \
+ sed -e "s#find_path(_SEQAN_BASEDIR \"seqan\"#find_path(_SEQAN_BASEDIR \"seqan-${seqan_majorminor_ver}\"#" \
-e 's#NO_DEFAULT_PATH)#PATHS /usr)#' \
- -e "s#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR})#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR}/seqan-${SLOT})#" \
+ -e "s#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR})#set(SEQAN_INCLUDE_DIRS_MAIN \${SEQAN_INCLUDE_DIRS_MAIN} \${_SEQAN_BASEDIR}/seqan-${seqan_majorminor_ver})#" \
-i util/cmake/FindSeqAn.cmake || die
# pkg-config file
- sed -e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${SLOT}#" \
+ sed -e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${seqan_majorminor_ver}#" \
-i util/pkgconfig/${PN}.pc.in || die
rm -f util/cmake/FindZLIB.cmake || die
@@ -47,30 +56,27 @@ src_prepare() {
src_configure() {
local mycmakeargs=(
- -DBoost_NO_BOOST_CMAKE=ON
-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
- -DSEQAN_NO_DOX="$(usex !doc)"
+ -DSEQAN_NO_DOX=$(usex !doc)
)
cmake-utils_src_configure
}
src_compile() {
cmake-utils_src_compile
- cd "${BUILD_DIR}" || die
- use doc && emake dox
+ use doc && cmake-utils_src_compile -C "${BUILD_DIR}" dox
}
src_install() {
cmake-utils_src_install
- # SLOT header such that different seqan versions can be installed in parallel
- mkdir "${ED}"/usr/include/${PN}-${SLOT} || die
- mv "${ED}"/usr/include/{${PN},${PN}-${SLOT}/} || die
+ # multi-version header such that different seqan versions can be installed in parallel
+ mkdir "${ED%/}"/usr/include/${PN}-${seqan_majorminor_ver} || die
+ mv "${ED%/}"/usr/include/${PN}{,-${seqan_majorminor_ver}/} || die
# pkg-config file
- mv "${ED}"/usr/share/pkgconfig/${PN}-{$(get_version_component_range 1),${SLOT}}.pc || die
+ mv "${ED%/}"/usr/share/pkgconfig/${PN}-{${seqan_major_ver},${seqan_majorminor_ver}}.pc || die
- pushd "${ED}"/usr/share/pkgconfig/ >/dev/null
- ln -s ${PN}-{${SLOT},$(get_version_component_range 1)}.pc || die
- popd >/dev/null
+ # create pkg-config symlink to restore default behaviour
+ dosym ${PN}-${seqan_majorminor_ver}.pc /usr/share/pkgconfig/${PN}-${seqan_major_ver}.pc
}