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| author |   David Seifert <soap@gentoo.org> | 2016-09-25 11:26:02 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-09-25 11:39:05 +0200 |
| commit | e81e21772377c90519cdd2e095b305e1039ecead (patch) | |
| tree | 8b81d88e9d0ab02d7f252d153bc9946b0d33ba79 /sci-biology/vcftools/files | |
| parent | sci-biology/vcftools: Version bump to 0.1.14 (diff) | |
| download | gentoo-e81e21772377c90519cdd2e095b305e1039ecead.tar.gz gentoo-e81e21772377c90519cdd2e095b305e1039ecead.tar.bz2 gentoo-e81e21772377c90519cdd2e095b305e1039ecead.zip | |
sci-biology/vcftools: Remove old ebuild
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/2407
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/vcftools/files')
| -rw-r--r-- | sci-biology/vcftools/files/vcftools-0.1.12b-buildsystem.patch | 53 |
1 files changed, 0 insertions, 53 deletions
diff --git a/sci-biology/vcftools/files/vcftools-0.1.12b-buildsystem.patch b/sci-biology/vcftools/files/vcftools-0.1.12b-buildsystem.patch deleted file mode 100644 index 85197664a0d1..000000000000 --- a/sci-biology/vcftools/files/vcftools-0.1.12b-buildsystem.patch +++ /dev/null @@ -1,53 +0,0 @@ -diff -ur vcftools_0.1.12b.orig/cpp/Makefile vcftools_0.1.12b/cpp/Makefile ---- vcftools_0.1.12b.orig/cpp/Makefile 2014-08-01 21:11:22.000000000 +0200 -+++ vcftools_0.1.12b/cpp/Makefile 2015-04-03 17:24:38.830781049 +0200 -@@ -3,8 +3,8 @@ - # ($Revision: 1.1 $) - - # Compiler --CC = gcc --CPP = g++ -+CC ?= gcc -+CPP ?= g++ - # Output executable - EXECUTABLE = vcftools - # Flag used to turn on compilation of PCA routines -@@ -12,9 +12,9 @@ - VCFTOOLS_PCA = 0 - endif - # Compiler flags --CFLAGS = -O2 -m64 -+CFLAGS ?= -O2 -m64 - #CFLAGS = -Wall -O2 -pg -m64 --CPPFLAGS = -O2 -D_FILE_OFFSET_BITS=64 -+CPPFLAGS ?= -O2 -D_FILE_OFFSET_BITS=64 - #CPPFLAGS = -O2 -Wall -pg -D_FILE_OFFSET_BITS=64 - # Included libraries (zlib) - LIB = -lz -@@ -29,13 +29,13 @@ - # Define flag for PCA routine compilation - CPPFLAGS += -DVCFTOOLS_PCA - # Add LAPACK library -- LIB += -llapack -+ LIB += `$(PKG_CONFIG) --libs lapack` - # Add PCA source code - OBJS+= dgeev.o - endif - - vcftools: $(OBJS) -- $(CPP) $(CPPFLAGS) $(OBJS) -o vcftools $(LIB) -+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) $(LDFLAGS) $(OBJS) -o vcftools $(LIB) - ifdef BINDIR - cp $(CURDIR)/$@ $(BINDIR)/$@ - endif -@@ -47,8 +47,8 @@ - -include $(OBJS:.o=.d) - - %.o: %.cpp -- $(CPP) -c $(CPPFLAGS) $*.cpp -o $*.o -- $(CPP) -MM $(CPPFLAGS) $*.cpp > $*.d -+ $(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $*.cpp -o $*.o -+ $(CXX) -MM $(CXXFLAGS) $(CPPFLAGS) $*.cpp > $*.d - - # remove compilation products - clean: |