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authorAaron Bauman <bman@gentoo.org>2019-11-23 22:09:28 -0500
committerAaron Bauman <bman@gentoo.org>2019-11-23 22:21:41 -0500
commitfb621d2dda799c17834b978fccc3b4073b828761 (patch)
tree338f35d8006655acd586ce7e06a4b97dd95198c1 /sci-biology
parentmedia-libs/quvi: drop old (diff)
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sci-biology/psipred: drop old EAPI
Signed-off-by: Aaron Bauman <bman@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/psipred/Manifest2
-rw-r--r--sci-biology/psipred/psipred-3.2.1.ebuild51
-rw-r--r--sci-biology/psipred/psipred-3.3.ebuild54
3 files changed, 0 insertions, 107 deletions
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index c3e796709fc4..3dfae4734db6 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -1,5 +1,3 @@
-DIST psipred3.3.tar.gz 1239746 BLAKE2B b1afa9a6a85f239e02b5affec3a6ff48281f962b94b5b6e5c2f4da496a8f73b3d5103a3e77908976a6423eebcfc4e54d2bcb8f7ab012859a115d6f21d580e9d2 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e
DIST psipred3.4.tar.gz 1102416 BLAKE2B 9797f4181357bb26455253370aca39857c39a2c4bcd521b10a139784e6fd5dc9e14b76c11d99989ac33c3a01fb62807957f9969daa5ac9d928b0b4e83e943743 SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919
DIST psipred3.5.tar.gz 1101579 BLAKE2B 2fd86841cbc4bb86045b51f8283550832df8356ee88a6ef2c85281b5810debb23ac53652ddc5ffc9bd6f8e9e7248ce39ccee23400ff8fb49cd05b877d730b553 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2
-DIST psipred321.tar.gz 747151 BLAKE2B 8b58a2c45efc92e049622784e1ca39a622ecfb5f660554cf3a26ab9a7e85feb3e453935fca12f0a68328e5e736becdae737f80407730ea9315f4e79b19f71e8b SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1
DIST tdbdata.tar.gz 40241247 BLAKE2B c85a2fde9b29a14e1da27be1a7ea5fe1704f72b66cd79514dd50a3a0d2d8aab9341f7d5075f6d1896cefa54ca83948387b902b38780181777dc505a9a15b4aab SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c
diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild
deleted file mode 100644
index 1bcb58744638..000000000000
--- a/sci-biology/psipred/psipred-3.2.1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- sci-biology/ncbi-tools
- sci-biology/update-blastdb"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/3.2-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC)
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install
- dobin runpsipred* bin/* BLAST+/runpsipred*
- insinto /usr/share/${PN}
- doins -r data
- dodoc README
- newdoc BLAST+/README README-blast
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
diff --git a/sci-biology/psipred/psipred-3.3.ebuild b/sci-biology/psipred/psipred-3.3.ebuild
deleted file mode 100644
index 4e0b0102837b..000000000000
--- a/sci-biology/psipred/psipred-3.3.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils prefix toolchain-funcs versionator
-
-#MY_P="${PN}$(delete_all_version_separators)"
-MY_P="${PN}${PV}"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="
- http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
- test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- sci-biology/ncbi-tools
- sci-biology/update-blastdb"
-DEPEND=""
-
-S="${WORKDIR}"/${PN}
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/3.2-fgets.patch
- eprefixify runpsipred*
- emake -C src clean
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC)
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install
- dobin runpsipred* bin/* BLAST+/runpsipred*
- insinto /usr/share/${PN}
- doins -r data
- dodoc README
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}