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| author |   David Seifert <soap@gentoo.org> | 2020-08-03 18:54:26 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-08-03 18:54:26 +0200 |
| commit | fbdda699ffc5db18d5dc0b5e2c59cf511dec93b5 (patch) | |
| tree | dd0479f419d7eafafacd27d5eb06110140d88fb2 /sci-biology | |
| parent | sci-biology/samtools: Bump to version 1.10 (diff) | |
| download | gentoo-fbdda699ffc5db18d5dc0b5e2c59cf511dec93b5.tar.gz gentoo-fbdda699ffc5db18d5dc0b5e2c59cf511dec93b5.tar.bz2 gentoo-fbdda699ffc5db18d5dc0b5e2c59cf511dec93b5.zip | |
sci-biology/bcftools: Bump to version 1.10.2
Package-Manager: Portage-3.0.1, Repoman-2.3.23
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.10.2.ebuild | 43 |
2 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index eef8daed7a75..508a5c41fe37 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,2 +1,3 @@ +DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B 51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e SHA512 f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300 DIST bcftools-1.5.tar.bz2 2975685 BLAKE2B 937b7db770dcaddafbd00b67c3b88501a3190564b2ca629b83e52b48b414a604dd203cd067e357e2b7d02c700387576fca458d1cab2982dafa3b2c215b528722 SHA512 66b8bc61b9fbb381679a6781f77a18f66e8105567992da011413bc573d99b619558a1cf58e9e1373ae347a8b81638dd91977802a07a4578ddc9c61fb53403233 DIST bcftools-1.9.tar.bz2 3134355 BLAKE2B dd551b509b1ee554f70be9da28a6eaf81dfcec43fc0d1aa972d64ef846f9db47f39177345e8c1ca754d11defb9c0823976ae94d6b3e7cd99313eed4f381182ed SHA512 fd662fb0d214eb75ac04fc4494e8dbaca84d10698ca14801427341def6a5df4af99e7bd4cd873da5422ae921deb49b940cedb926da356b1eabfac525a38f806c diff --git a/sci-biology/bcftools/bcftools-1.10.2.ebuild b/sci-biology/bcftools/bcftools-1.10.2.ebuild new file mode 100644 index 000000000000..179f7dea77e4 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.10.2.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep ' + dev-python/matplotlib[${PYTHON_MULTI_USEDEP}] + ') + =sci-libs/htslib-${PV}*:= + sys-libs/zlib:= + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" + +src_prepare() { + default + + python_fix_shebang misc/{guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --with-htslib=system +} |