sci-chemistry/avogadro: remove last rited package

Closes: https://bugs.gentoo.org/645030
Closes: https://bugs.gentoo.org/447532
Closes: https://bugs.gentoo.org/649500

6 files changed, 0 insertions, 139 deletions

diff --git a/sci-chemistry/avogadro/files/avogadro-1.1.1-boost-join-moc.patch b/sci-chemistry/avogadro/files/avogadro-1.1.1-boost-join-moc.patch
deleted file mode 100644
index a464fdac42ca..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.1.1-boost-join-moc.patch
+++ /dev/null
@@ -1,78 +0,0 @@
-Add include guards to all boost includes, as qt's moc trips
-over nested BOOST_JOIN macros:
-* usr/include/boost/type_traits/detail/has_binary_operator.hp:50: Parse error at "BOOST_JOIN"
-* libavogadro/src/CMakeFiles/avogadro.dir/build.make:217: recipe for target 'libavogadro/src/moc_pythonengine_p.cxx' failed
-See also: https://bugs.gentoo.org/show_bug.cgi?id=578896
-
---- avogadro-1.1.1/libavogadro/src/pythonengine_p.h
-+++ avogadro-1.1.1/libavogadro/src/pythonengine_p.h
-@@ -27,7 +27,9 @@
- 
- #include <avogadro/global.h>
- #include <avogadro/engine.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- 
- namespace Avogadro {
- 
---- avogadro-1.1.1/libavogadro/src/pythonextension_p.h
-+++ avogadro-1.1.1/libavogadro/src/pythonextension_p.h
-@@ -29,7 +29,9 @@
- #include <avogadro/extension.h>
- #include <avogadro/primitive.h>
- #include <avogadro/glwidget.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- 
- #include <QWidget>
- #include <QList>
---- avogadro-1.1.1/libavogadro/src/pythoninterpreter.h
-+++ avogadro-1.1.1/libavogadro/src/pythoninterpreter.h
-@@ -26,7 +26,9 @@
- #define PYTHONINTERPRETER_H
- 
- #include <avogadro/global.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- #include <avogadro/primitive.h>
- #include <QString>
- 
---- avogadro-1.1.1/libavogadro/src/pythonscript.h
-+++ avogadro-1.1.1/libavogadro/src/pythonscript.h
-@@ -27,7 +27,9 @@
- #define PYTHONSCRIPT_H
- 
- #include <avogadro/global.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- 
- #include "pythonerror.h"
- 
---- avogadro-1.1.1/libavogadro/src/pythonthread_p.h
-+++ avogadro-1.1.1/libavogadro/src/pythonthread_p.h
-@@ -26,7 +26,9 @@
- #define PYTHONTHREAD_H
- 
- #include <avogadro/global.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- 
- namespace Avogadro {
- 
---- avogadro-1.1.1/libavogadro/src/pythontool_p.h
-+++ avogadro-1.1.1/libavogadro/src/pythontool_p.h
-@@ -27,7 +27,9 @@
- 
- #include <avogadro/global.h>
- #include <avogadro/tool.h>
-+#ifndef Q_MOC_RUN
- #include <boost/python.hpp>
-+#endif
- 
- #include <QObject>
- #include <QAction>
diff --git a/sci-chemistry/avogadro/files/avogadro-1.1.1-mkspecs-dir.patch b/sci-chemistry/avogadro/files/avogadro-1.1.1-mkspecs-dir.patch
deleted file mode 100644
index 45c616422efe..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.1.1-mkspecs-dir.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -up avogadro-1.1.1/CMakeLists.txt.mkspecs-dir avogadro-1.1.1/CMakeLists.txt
---- avogadro-1.1.1/CMakeLists.txt.mkspecs-dir	2014-01-24 23:43:01.618510517 -0600
-+++ avogadro-1.1.1/CMakeLists.txt	2014-01-24 23:44:03.236844746 -0600
-@@ -547,7 +547,7 @@ if(QT_MKSPECS_DIR AND INSTALL_QMAKE_PRF)
- #    )
-     install(FILES
-       "${CMAKE_CURRENT_BINARY_DIR}/avogadro.prf"
--      DESTINATION "${CMAKE_INSTALL_PREFIX}/${QT_MKSPECS_RELATIVE}/features"
-+      DESTINATION "${QT_MKSPECS_DIR}/features"
-     )
- #  endif ("${QT_MKSPECS_DIR}" MATCHES ^$"${CMAKE_INSTALL_PREFIX}/")
- else()
diff --git a/sci-chemistry/avogadro/files/avogadro-1.1.1-no-strip.patch b/sci-chemistry/avogadro/files/avogadro-1.1.1-no-strip.patch
deleted file mode 100644
index 490dd58907df..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.1.1-no-strip.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -up avogadro-1.1.1/CMakeLists.txt.no-strip avogadro-1.1.1/CMakeLists.txt
---- avogadro-1.1.1/CMakeLists.txt.no-strip	2014-01-24 23:14:44.473840038 -0600
-+++ avogadro-1.1.1/CMakeLists.txt	2014-01-24 23:15:46.869166459 -0600
-@@ -114,7 +114,7 @@ if (CMAKE_COMPILER_IS_GNUCXX)
-   endif()
-   # Set up additional build flags for particular build types. These will be added to CMAKE_CXX_FLAGS,
-   # they will not replace them.
--  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
-+  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT")
-   set(CMAKE_CXX_FLAGS_RELWITHDEBINFO
-     "${CMAKE_CXX_FLAGS_RELWITHDEBINFO} ${CMAKE_CXX_FLAGS_WARN}")
-   set(CMAKE_CXX_FLAGS_DEBUG   "-g3 -fno-inline ${CMAKE_CXX_FLAGS_WARN}")
diff --git a/sci-chemistry/avogadro/files/avogadro-1.1.1-openbabel.patch b/sci-chemistry/avogadro/files/avogadro-1.1.1-openbabel.patch
deleted file mode 100644
index 4bdc6b2e780e..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.1.1-openbabel.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- libavogadro/src/python/CMakeLists.txt | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/libavogadro/src/python/CMakeLists.txt b/libavogadro/src/python/CMakeLists.txt
-index efb518a..1a3d91a 100644
---- a/libavogadro/src/python/CMakeLists.txt
-+++ b/libavogadro/src/python/CMakeLists.txt
-@@ -21,7 +21,7 @@ if (WIN32)
-   target_link_libraries(python-module avogadro ${PYTHON_LIBRARIES})
- else()
-   target_link_libraries(python-module stdc++ avogadro
--    ${QT_LIBRARIES} ${PYTHON_LIBRARIES} ${Boost_LIBRARIES})
-+    ${QT_LIBRARIES} ${PYTHON_LIBRARIES} ${Boost_LIBRARIES} ${OPENBABEL2_LIBRARIES})
- endif()
- 
- # Let's try to use this instead:
diff --git a/sci-chemistry/avogadro/files/avogadro-1.1.1-pkgconfig_eigen.patch b/sci-chemistry/avogadro/files/avogadro-1.1.1-pkgconfig_eigen.patch
deleted file mode 100644
index 93dbe2ff4ecc..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.1.1-pkgconfig_eigen.patch
+++ /dev/null
@@ -1,8 +0,0 @@
-diff -up avogadro-1.1.1/avogadro.pc.in.eigen avogadro-1.1.1/avogadro.pc.in
---- avogadro-1.1.1/avogadro.pc.in.eigen	2013-12-06 09:50:04.000000000 -0600
-+++ avogadro-1.1.1/avogadro.pc.in	2014-01-25 00:37:45.732007852 -0600
-@@ -9,3 +9,4 @@ Description: Avogadro libraries
- Version: @Avogadro_VERSION_FULL@
- Libs: -L${libdir} -lavogadro
- Cflags: -I${pkgincludedir}
-+Requires.private: eigen3
diff --git a/sci-chemistry/avogadro/files/avogadro-1.2.0-numpy.patch b/sci-chemistry/avogadro/files/avogadro-1.2.0-numpy.patch
deleted file mode 100644
index 4869fa4ea79d..000000000000
--- a/sci-chemistry/avogadro/files/avogadro-1.2.0-numpy.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/cmake/modules/FindNumpy.cmake b/cmake/modules/FindNumpy.cmake
-index b348418..49ba206 100644
---- a/cmake/modules/FindNumpy.cmake
-+++ b/cmake/modules/FindNumpy.cmake
-@@ -10,7 +10,7 @@
- #endif (NUMPY_INCLUDE_DIR)
- 
- EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -c 
--    "import numpy; print numpy.get_include()"
-+	"import numpy; print (numpy.get_include())"
-     OUTPUT_VARIABLE NUMPY_INCLUDE_DIR
-     OUTPUT_STRIP_TRAILING_WHITESPACE)
-