sci-chemistry/gromacs: Allow to download manual instead of building it

Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
author: Alexey Shvetsov <alexxy@gentoo.org> 2021-06-17 13:18:47 +0300
committer: Alexey Shvetsov <alexxy@gentoo.org> 2021-06-17 13:18:58 +0300
commit: 48e8d1fbc7aecb38c2e1623d1e89458833d90d5b (patch)
tree: e85a159b3a900a769933ded64e998bf6ff192f2e /sci-chemistry
parent: net-misc/dhcp: keyword ~riscv (diff)
download: gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.tar.gz
gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.tar.bz2
gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.zip
10 files changed, 279 insertions, 200 deletions
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index bf643a26eb3f..001d12157333 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -8,6 +8,12 @@ DIST gromacs-2021.2.tar.gz 37976386 BLAKE2B 8818321bbcbdee25356bbf909d9c667f9d7c
 DIST gromacs-2021.tar.gz 35061679 BLAKE2B a7d8bd728480455e5c069392e3921a4f788802ec164ee24241cac9bc7c555cee07ef26853efa61e40a787fa87e6d20af35d56b98ac6a3757ef07fc4176679e19 SHA512 10d9d64b3c2329613a18d861589428841f55bede45e1800aec25246258209be1385aabaa0d5b52425c0ac21804c38b401db76448bb539ff3cf25f8b94e09575c
 DIST manual-2018.8.pdf 10025023 BLAKE2B afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e SHA512 b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7 SHA512 dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
+DIST manual-2020.4.pdf 11851608 BLAKE2B 7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d6021026e7 SHA512 928555663c77de36393e625c29d388d4e1c8c1298e7a993d871839e0d4d8d18d190221ad8f1d975bd072bdd6a061e9ea5b9295f2ecf45f24b6523ea5ea290fed
+DIST manual-2020.5.pdf 11850797 BLAKE2B b605de81cce385177f278b563526725688b4c2b0326f6f2c22bddc9b455c016365ee82731ad0ef2b2c9522e7d140c4a097b7a25f91552be60741d876bcc4c929 SHA512 0fa81494dbb4cb71c274fa1d1b1ef13bc5be8e69be841d429d06d5e9ef5517158b2130c0120ef6de13e73de5cd8af941c7b983ddba1da8af8214272704ce629e
+DIST manual-2020.6.pdf 11850850 BLAKE2B 155e4eb9c200dcd0a38e3669b26077fcf310d437b82d9a593d333dada3989c2c8a936d62c642e195f98bb474b1673b8142405c467348fc96a74d57fb12106d76 SHA512 be508ebec597b82a2c4056029f8bb731b22cb8902628a45462ed21af54c554d28e07d5381efaaa96565202b7b47d33aea67950206cd9e8936211ae721b21b3e1
+DIST manual-2021.1.pdf 12252366 BLAKE2B c3f104f3a5c8b784b78bdb027ae3bf818977fd86e15b81760877423805d74f468417df6ad57b240d138f4ee4c567c2e7676c0084911ee1400ebfa7bab2673901 SHA512 8d4468da400abb39c307b1f31f5b4b4ae52152df1fb5bc7059a37072cd2a20136858d7280ea6a7138fe6c18e04821386d72f1ac4ee9a303e359e1d52b5250f12
+DIST manual-2021.2.pdf 12252501 BLAKE2B 0dbf9024e1516076b0eeb46e41523b966d1d81f57504fe0501c7bc8575e74fb19e3452ac584757e425bcccbc737367fe83be87fd21a4287f4675cf87184b960b SHA512 14156d3b1017990e0be3ceb7ec055777a1aec4c347ac2e821a042d51c931f84ebca862f60644a90ed7ba4070cb14ff8babcde3e4351e4dbec84df8563e350984
+DIST manual-2021.pdf 12251377 BLAKE2B 6b3c80fedf04b3cdc05ec9b52e0dd78c0c7abf2d9819c00ad29e1d7e2dd829cfc0e61c86c899859ac6af6b631f856737810f05f9c903456805b5b9c9c6c85c16 SHA512 1bd61e4d052ebe4ff293be710159f135013d38f1299557d0b0e5edcf60d288d8534694896a1feebe572f52187f85e890e59b7c71644a0c03bd264cfae6d348bc
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275 SHA512 3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 67643195 BLAKE2B 1e054e24b187946f7ea28090d4f20cf8e1d79a26253f57ba07d130e0773d8541b8a1552a38023d31a68ce8bc62d8e0af1d98609234bb3e7d3e6d567307ebb386 SHA512 eacf1c55b982515a305c29459fe80a7cd558a8481e5689962aa956148af542568b1d1ce59c6784ecb0afd4768c2b664afa21e12af2d89ae2b06b1ba61ad72036
 DIST regressiontests-2020.4.tar.gz 48542144 BLAKE2B 1dcde67525d40ababa74d9e8ba2dd3fdef1de7d1018491e102edd71d3a622925f213b5a0812e5448882b4cb5fb578317e8e5029bdc4bd53008aa8441a3d9dea1 SHA512 7c71f36a1cef22562f14dcd233e90ad2fe370ae1a7d3b5268727259b374e12d4754253735ac8745d3738bdbc1cc2067780fda5e393be2ff264f632fe4e0c1978
diff --git a/sci-chemistry/gromacs/gromacs-2020.4.ebuild b/sci-chemistry/gromacs/gromacs-2020.4.ebuild
index d04309a01fc7..266941a81e30 100644
--- a/sci-chemistry/gromacs/gromacs-2020.4.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.4.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="amd64 arm x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -133,28 +136,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -208,7 +212,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -282,7 +286,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -308,9 +312,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2020.5.ebuild b/sci-chemistry/gromacs/gromacs-2020.5.ebuild
index 59a156235552..41ac7771497c 100644
--- a/sci-chemistry/gromacs/gromacs-2020.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.5.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -133,28 +136,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -208,7 +212,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -282,7 +286,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -308,9 +312,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2020.6.ebuild b/sci-chemistry/gromacs/gromacs-2020.6.ebuild
index 59a156235552..41ac7771497c 100644
--- a/sci-chemistry/gromacs/gromacs-2020.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.6.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -133,28 +136,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -208,7 +212,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -282,7 +286,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -308,9 +312,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2020.9999.ebuild b/sci-chemistry/gromacs/gromacs-2020.9999.ebuild
index 59a156235552..41ac7771497c 100644
--- a/sci-chemistry/gromacs/gromacs-2020.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.9999.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -133,28 +136,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -208,7 +212,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -282,7 +286,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -308,9 +312,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2021.1.ebuild b/sci-chemistry/gromacs/gromacs-2021.1.ebuild
index 16a2bffe6a33..e8ea613693f0 100644
--- a/sci-chemistry/gromacs/gromacs-2021.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.1.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -136,28 +139,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -218,7 +222,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -289,7 +293,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -315,9 +319,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2021.2.ebuild b/sci-chemistry/gromacs/gromacs-2021.2.ebuild
index e8cbb127fefd..7b257ee4f40f 100644
--- a/sci-chemistry/gromacs/gromacs-2021.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.2.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -136,28 +139,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -218,7 +222,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -289,7 +293,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -315,9 +319,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2021.9999.ebuild b/sci-chemistry/gromacs/gromacs-2021.9999.ebuild
index 19c3097b599b..16825937690a 100644
--- a/sci-chemistry/gromacs/gromacs-2021.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.9999.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -131,28 +134,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -213,7 +217,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -284,7 +288,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -310,9 +314,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/gromacs-2021.ebuild b/sci-chemistry/gromacs/gromacs-2021.ebuild
index ea5d7cd93dc2..a4fdab0dfaf7 100644
--- a/sci-chemistry/gromacs/gromacs-2021.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.ebuild
@@ -7,6 +7,7 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{7,8,9} )
 
+DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic multilib readme.gentoo-r1 toolchain-funcs xdg-utils
@@ -21,6 +22,7 @@ if [[ ${PV} = *9999* ]]; then
 else
 	SRC_URI="
 		http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+		doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
 		test? ( http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
 	KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
@@ -35,7 +37,7 @@ HOMEPAGE="http://www.gromacs.org/"
 #        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
 LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
 SLOT="0/${PV}"
-IUSE="X blas cuda +custom-cflags +doc double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
+IUSE="X blas cuda +custom-cflags +doc build-manual double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
 
 CDEPEND="
 	X? (
@@ -57,7 +59,7 @@ CDEPEND="
 	"
 BDEPEND="${CDEPEND}
 	virtual/pkgconfig
-	doc? (
+	build-manual? (
 		app-doc/doxygen
 		$(python_gen_cond_dep '
 			dev-python/sphinx[${PYTHON_MULTI_USEDEP}]
@@ -72,6 +74,7 @@ RDEPEND="${CDEPEND}"
 
 REQUIRED_USE="
 	|| ( single-precision double-precision )
+	|| ( doc build-manual )
 	cuda? ( single-precision )
 	cuda? ( !opencl )
 	mkl? ( !blas !fftw !lapack )
@@ -133,28 +136,29 @@ src_prepare() {
 	fi
 
 	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-
-	# try to create policy for imagemagik
-	mkdir -p ${HOME}/.config/ImageMagick
-	cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
-	<?xml version="1.0" encoding="UTF-8"?>
-	<!DOCTYPE policymap [
-	<!ELEMENT policymap (policy)+>
-	!ATTLIST policymap xmlns CDATA #FIXED ''>
-	<!ELEMENT policy EMPTY>
-	<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
+	if use build-manual; then
+		# try to create policy for imagemagik
+		mkdir -p ${HOME}/.config/ImageMagick
+		cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+		<?xml version="1.0" encoding="UTF-8"?>
+		<!DOCTYPE policymap [
+		<!ELEMENT policymap (policy)+>
+		!ATTLIST policymap xmlns CDATA #FIXED ''>
+		<!ELEMENT policy EMPTY>
+		<!ATTLIST policy xmlns CDATA #FIXED '' domain NMTOKEN #REQUIRED
 			name NMTOKEN #IMPLIED pattern CDATA #IMPLIED rights NMTOKEN #IMPLIED
 			stealth NMTOKEN #IMPLIED value CDATA #IMPLIED>
-	]>
-	<policymap>
-		<policy domain="coder" rights="read | write" pattern="PS" />
-		<policy domain="coder" rights="read | write" pattern="PS2" />
-		<policy domain="coder" rights="read | write" pattern="PS3" />
-		<policy domain="coder" rights="read | write" pattern="EPS" />
-		<policy domain="coder" rights="read | write" pattern="PDF" />
-		<policy domain="coder" rights="read | write" pattern="XPS" />
-	</policymap>
-	EOF
+		]>
+		<policymap>
+			<policy domain="coder" rights="read | write" pattern="PS" />
+			<policy domain="coder" rights="read | write" pattern="PS2" />
+			<policy domain="coder" rights="read | write" pattern="PS3" />
+			<policy domain="coder" rights="read | write" pattern="EPS" />
+			<policy domain="coder" rights="read | write" pattern="PDF" />
+			<policy domain="coder" rights="read | write" pattern="XPS" />
+		</policymap>
+		EOF
+	fi
 }
 
 src_configure() {
@@ -215,7 +219,7 @@ src_configure() {
 		-DGMX_OPENMP=$(usex openmp)
 		-DGMX_COOL_QUOTES=$(usex offensive)
 		-DGMX_USE_TNG=$(usex tng)
-		-DGMX_BUILD_MANUAL=$(usex doc)
+		-DGMX_BUILD_MANUAL=$(usex build-manual)
 		-DGMX_HWLOC=$(usex hwloc)
 		-DGMX_DEFAULT_SUFFIX=off
 		-DGMX_SIMD="$acce"
@@ -286,7 +290,7 @@ src_compile() {
 				distutils-r1_src_compile
 		fi
 		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
+		if use build-manual; then
 			BUILD_DIR="${WORKDIR}/${P}_${x}"\
 				cmake_src_compile manual
 		fi
@@ -312,9 +316,14 @@ src_install() {
 			BUILD_DIR="${WORKDIR}/${P}_${x}" \
 				cmake_src_install	python_packaging/install
 		fi
-		if use doc; then
+		if use build-manual; then
 			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
 		fi
+
+		if use doc; then
+			newdoc "${DISTDIR}/manual-${PV}.pdf" "${PN}-manual-${PV}.pdf"
+		fi
+
 		use mpi || continue
 		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
 			cmake_src_install
diff --git a/sci-chemistry/gromacs/metadata.xml b/sci-chemistry/gromacs/metadata.xml
index 4235f32ded67..44134f443625 100644
--- a/sci-chemistry/gromacs/metadata.xml
+++ b/sci-chemistry/gromacs/metadata.xml
@@ -10,6 +10,7 @@
 		<name>Gentoo Chemistry Project</name>
 	</maintainer>
 	<use>
+		<flag name="build-manual">Build manual instead of downloading it</flag>
 		<flag name="cuda">Enable cuda non-bonded kernels</flag>
 		<flag name="double-precision">More precise calculations at the expense of speed</flag>
 		<flag name="gmxapi">Add support for gmxapi library</flag>
author	Alexey Shvetsov <alexxy@gentoo.org>	2021-06-17 13:18:47 +0300
committer	Alexey Shvetsov <alexxy@gentoo.org>	2021-06-17 13:18:58 +0300
commit	48e8d1fbc7aecb38c2e1623d1e89458833d90d5b (patch)
tree	e85a159b3a900a769933ded64e998bf6ff192f2e /sci-chemistry
parent	net-misc/dhcp: keyword ~riscv (diff)
download	gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.tar.gz gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.tar.bz2 gentoo-48e8d1fbc7aecb38c2e1623d1e89458833d90d5b.zip