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authorJustin Lecher <jlec@gentoo.org>2015-08-24 12:47:45 +0200
committerJustin Lecher <jlec@gentoo.org>2015-08-24 12:49:19 +0200
commiteaaface92ee81f30a6ac66fe7acbcc42c00dc450 (patch)
tree6a380aa33005e1997c9dbe6f1c00520274543303 /sci-chemistry
parentsci-libs/ViSP: Disable Coin3D to avoid automagic. Bug #558498. (diff)
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Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/GromacsWrapper/metadata.xml2
-rw-r--r--sci-chemistry/PyMca/metadata.xml2
-rw-r--r--sci-chemistry/acpype/acpype-374.ebuild2
-rw-r--r--sci-chemistry/acpype/acpype-389.ebuild2
-rw-r--r--sci-chemistry/acpype/metadata.xml2
-rw-r--r--sci-chemistry/ambertools/metadata.xml2
-rw-r--r--sci-chemistry/apbs/metadata.xml2
-rw-r--r--sci-chemistry/aqua/metadata.xml2
-rw-r--r--sci-chemistry/aria/metadata.xml2
-rw-r--r--sci-chemistry/arp-warp-bin/metadata.xml2
-rw-r--r--sci-chemistry/autodock/metadata.xml2
-rw-r--r--sci-chemistry/autodock_vina/metadata.xml2
-rw-r--r--sci-chemistry/avogadro/metadata.xml2
-rw-r--r--sci-chemistry/azara/metadata.xml2
-rw-r--r--sci-chemistry/babel/metadata.xml2
-rw-r--r--sci-chemistry/balbes/metadata.xml2
-rw-r--r--sci-chemistry/ball/metadata.xml2
-rw-r--r--sci-chemistry/bkchem/metadata.xml2
-rw-r--r--sci-chemistry/bodr/metadata.xml2
-rw-r--r--sci-chemistry/burrow-owl/metadata.xml2
-rw-r--r--sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild2
-rw-r--r--sci-chemistry/cara-bin/metadata.xml2
-rw-r--r--sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild4
-rw-r--r--sci-chemistry/ccp4-apps/metadata.xml2
-rw-r--r--sci-chemistry/ccp4/metadata.xml2
-rw-r--r--sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild4
-rw-r--r--sci-chemistry/ccp4i/metadata.xml2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.4.2.ebuild2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild2
-rw-r--r--sci-chemistry/ccpn/metadata.xml2
-rw-r--r--sci-chemistry/chemical-mime-data/metadata.xml2
-rw-r--r--sci-chemistry/chemtool/metadata.xml2
-rw-r--r--sci-chemistry/clashlist/metadata.xml2
-rw-r--r--sci-chemistry/cluster/metadata.xml2
-rw-r--r--sci-chemistry/cns/metadata.xml2
-rw-r--r--sci-chemistry/coot/coot-0.7.1-r1.ebuild2
-rw-r--r--sci-chemistry/coot/coot-0.7.2.ebuild2
-rw-r--r--sci-chemistry/coot/coot-0.7.ebuild2
-rw-r--r--sci-chemistry/coot/metadata.xml2
-rw-r--r--sci-chemistry/cyana/metadata.xml2
-rw-r--r--sci-chemistry/dssp/metadata.xml2
-rw-r--r--sci-chemistry/easychem/metadata.xml2
-rw-r--r--sci-chemistry/eden/metadata.xml2
-rw-r--r--sci-chemistry/elem/metadata.xml2
-rw-r--r--sci-chemistry/freeon/metadata.xml2
-rw-r--r--sci-chemistry/gabedit/metadata.xml2
-rw-r--r--sci-chemistry/gamess/metadata.xml2
-rw-r--r--sci-chemistry/gamessq/metadata.xml2
-rw-r--r--sci-chemistry/gelemental/metadata.xml2
-rw-r--r--sci-chemistry/ghemical/metadata.xml2
-rw-r--r--sci-chemistry/gopenmol/metadata.xml2
-rw-r--r--sci-chemistry/gperiodic/metadata.xml2
-rw-r--r--sci-chemistry/gromacs/metadata.xml2
-rw-r--r--sci-chemistry/gsim/metadata.xml2
-rw-r--r--sci-chemistry/gtk-gamess/metadata.xml2
-rw-r--r--sci-chemistry/hollow/metadata.xml2
-rw-r--r--sci-chemistry/icm-browser/metadata.xml2
-rw-r--r--sci-chemistry/icm/metadata.xml2
-rw-r--r--sci-chemistry/imosflm/metadata.xml2
-rw-r--r--sci-chemistry/jmol/jmol-12.0.45-r1.ebuild2
-rw-r--r--sci-chemistry/jmol/jmol-12.2.27-r1.ebuild2
-rw-r--r--sci-chemistry/jmol/metadata.xml2
-rw-r--r--sci-chemistry/ksdssp/metadata.xml2
-rw-r--r--sci-chemistry/makecif/metadata.xml2
-rw-r--r--sci-chemistry/mars/metadata.xml2
-rw-r--r--sci-chemistry/massxpert/metadata.xml2
-rw-r--r--sci-chemistry/mdanalysis/metadata.xml2
-rw-r--r--sci-chemistry/mead/metadata.xml2
-rw-r--r--sci-chemistry/metadata.xml2
-rw-r--r--sci-chemistry/mm-align/metadata.xml2
-rw-r--r--sci-chemistry/mm-align/mm-align-20120321.ebuild2
-rw-r--r--sci-chemistry/molden/metadata.xml2
-rw-r--r--sci-chemistry/moldy/metadata.xml2
-rw-r--r--sci-chemistry/molequeue/metadata.xml2
-rw-r--r--sci-chemistry/molmol/metadata.xml2
-rw-r--r--sci-chemistry/molrep/metadata.xml2
-rw-r--r--sci-chemistry/molrep/molrep-11.0.03-r1.ebuild2
-rw-r--r--sci-chemistry/molscript/metadata.xml2
-rw-r--r--sci-chemistry/molsketch/metadata.xml2
-rw-r--r--sci-chemistry/mongochem/metadata.xml2
-rw-r--r--sci-chemistry/mopac7/metadata.xml2
-rw-r--r--sci-chemistry/mosflm/metadata.xml2
-rw-r--r--sci-chemistry/mpqc/metadata.xml2
-rw-r--r--sci-chemistry/mrbump/metadata.xml2
-rw-r--r--sci-chemistry/msms-bin/metadata.xml2
-rw-r--r--sci-chemistry/mustang/metadata.xml2
-rw-r--r--sci-chemistry/namd/metadata.xml2
-rw-r--r--sci-chemistry/nmrglue/metadata.xml2
-rw-r--r--sci-chemistry/numbat/metadata.xml2
-rw-r--r--sci-chemistry/oasis/metadata.xml2
-rw-r--r--sci-chemistry/oasis/oasis-4.0-r3.ebuild2
-rw-r--r--sci-chemistry/openbabel-perl/metadata.xml2
-rw-r--r--sci-chemistry/openbabel-python/metadata.xml2
-rw-r--r--sci-chemistry/openbabel/metadata.xml2
-rw-r--r--sci-chemistry/ortep3/metadata.xml2
-rw-r--r--sci-chemistry/p3d/metadata.xml2
-rw-r--r--sci-chemistry/parassign/metadata.xml2
-rw-r--r--sci-chemistry/pdb-extract/metadata.xml2
-rw-r--r--sci-chemistry/pdb-tools/metadata.xml2
-rw-r--r--sci-chemistry/pdb2pqr/metadata.xml2
-rw-r--r--sci-chemistry/pdbcat/metadata.xml2
-rw-r--r--sci-chemistry/pdbcns/metadata.xml2
-rw-r--r--sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild2
-rw-r--r--sci-chemistry/pdbmat/metadata.xml2
-rw-r--r--sci-chemistry/phaser/metadata.xml2
-rw-r--r--sci-chemistry/platon/metadata.xml2
-rw-r--r--sci-chemistry/pointless/metadata.xml2
-rw-r--r--sci-chemistry/povscript+/metadata.xml2
-rw-r--r--sci-chemistry/prekin/metadata.xml2
-rw-r--r--sci-chemistry/probe/metadata.xml2
-rw-r--r--sci-chemistry/procheck/metadata.xml2
-rw-r--r--sci-chemistry/prodecomp/metadata.xml2
-rw-r--r--sci-chemistry/propka/metadata.xml2
-rw-r--r--sci-chemistry/propka/propka-3.1_p140511.ebuild2
-rw-r--r--sci-chemistry/psi/metadata.xml2
-rw-r--r--sci-chemistry/pymol-apbs-plugin/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-bni-tools/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-caver/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-dssp/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild2
-rw-r--r--sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild2
-rw-r--r--sci-chemistry/pymol-plugins-dynamics/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-emovie/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-msms/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-promol/metadata.xml2
-rw-r--r--sci-chemistry/pymol-plugins-psico/metadata.xml2
-rw-r--r--sci-chemistry/pymol/metadata.xml2
-rw-r--r--sci-chemistry/pymol/pymol-1.7.0.1.ebuild4
-rw-r--r--sci-chemistry/pymol/pymol-1.7.4.0.ebuild4
-rw-r--r--sci-chemistry/pymol/pymol-1.7.6.0.ebuild4
-rw-r--r--sci-chemistry/rasmol/metadata.xml2
-rw-r--r--sci-chemistry/raster3d/metadata.xml2
-rw-r--r--sci-chemistry/reduce/metadata.xml2
-rw-r--r--sci-chemistry/refmac/metadata.xml2
-rw-r--r--sci-chemistry/relax/metadata.xml2
-rw-r--r--sci-chemistry/scala/metadata.xml2
-rw-r--r--sci-chemistry/sfcheck/metadata.xml2
-rw-r--r--sci-chemistry/shelx/metadata.xml2
-rw-r--r--sci-chemistry/solve-resolve-bin/metadata.xml2
-rw-r--r--sci-chemistry/sparky/metadata.xml2
-rw-r--r--sci-chemistry/suitename/metadata.xml2
-rw-r--r--sci-chemistry/surf/metadata.xml2
-rw-r--r--sci-chemistry/theseus/metadata.xml2
-rw-r--r--sci-chemistry/threeV/metadata.xml2
-rw-r--r--sci-chemistry/tinker/metadata.xml2
-rw-r--r--sci-chemistry/tm-align/metadata.xml2
-rw-r--r--sci-chemistry/viewmol/metadata.xml2
-rw-r--r--sci-chemistry/vmd/metadata.xml2
-rw-r--r--sci-chemistry/vmd/vmd-1.9.2.ebuild4
-rw-r--r--sci-chemistry/votca-csg/metadata.xml2
-rw-r--r--sci-chemistry/votca-csgapps/metadata.xml2
-rw-r--r--sci-chemistry/wxmacmolplt/metadata.xml2
-rw-r--r--sci-chemistry/xds-bin/metadata.xml2
-rw-r--r--sci-chemistry/xdsgui/metadata.xml2
-rw-r--r--sci-chemistry/xdsi/metadata.xml2
-rw-r--r--sci-chemistry/xdsstat-bin/metadata.xml2
-rw-r--r--sci-chemistry/xia2/metadata.xml2
-rw-r--r--sci-chemistry/xyza2pipe/metadata.xml2
161 files changed, 167 insertions, 167 deletions
diff --git a/sci-chemistry/GromacsWrapper/metadata.xml b/sci-chemistry/GromacsWrapper/metadata.xml
index 43390c98619..cfb4336787c 100644
--- a/sci-chemistry/GromacsWrapper/metadata.xml
+++ b/sci-chemistry/GromacsWrapper/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/PyMca/metadata.xml b/sci-chemistry/PyMca/metadata.xml
index 91146f1d585..27a22d2d869 100644
--- a/sci-chemistry/PyMca/metadata.xml
+++ b/sci-chemistry/PyMca/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/acpype/acpype-374.ebuild b/sci-chemistry/acpype/acpype-374.ebuild
index 56036152102..ef9eb48f3c5 100644
--- a/sci-chemistry/acpype/acpype-374.ebuild
+++ b/sci-chemistry/acpype/acpype-374.ebuild
@@ -10,7 +10,7 @@ inherit python
DESCRIPTION="AnteChamber PYthon Parser interfacE"
HOMEPAGE="http://code.google.com/p/acpype/"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
LICENSE="GPL-3"
SLOT="0"
diff --git a/sci-chemistry/acpype/acpype-389.ebuild b/sci-chemistry/acpype/acpype-389.ebuild
index 6ff35e1fcc4..eeee1a4ba21 100644
--- a/sci-chemistry/acpype/acpype-389.ebuild
+++ b/sci-chemistry/acpype/acpype-389.ebuild
@@ -10,7 +10,7 @@ inherit python-r1
DESCRIPTION="AnteChamber PYthon Parser interfacE"
HOMEPAGE="http://code.google.com/p/acpype/"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
LICENSE="GPL-3"
SLOT="0"
diff --git a/sci-chemistry/acpype/metadata.xml b/sci-chemistry/acpype/metadata.xml
index 13ef0bf5a17..c9d29b2b9fc 100644
--- a/sci-chemistry/acpype/metadata.xml
+++ b/sci-chemistry/acpype/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/ambertools/metadata.xml b/sci-chemistry/ambertools/metadata.xml
index 13ef0bf5a17..c9d29b2b9fc 100644
--- a/sci-chemistry/ambertools/metadata.xml
+++ b/sci-chemistry/ambertools/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/apbs/metadata.xml b/sci-chemistry/apbs/metadata.xml
index f1b8467dd96..74f39f31725 100644
--- a/sci-chemistry/apbs/metadata.xml
+++ b/sci-chemistry/apbs/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/aqua/metadata.xml b/sci-chemistry/aqua/metadata.xml
index 1837bbc07a6..7abf15ec3b9 100644
--- a/sci-chemistry/aqua/metadata.xml
+++ b/sci-chemistry/aqua/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/aria/metadata.xml b/sci-chemistry/aria/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/aria/metadata.xml
+++ b/sci-chemistry/aria/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/arp-warp-bin/metadata.xml b/sci-chemistry/arp-warp-bin/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/arp-warp-bin/metadata.xml
+++ b/sci-chemistry/arp-warp-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/autodock/metadata.xml b/sci-chemistry/autodock/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/autodock/metadata.xml
+++ b/sci-chemistry/autodock/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/autodock_vina/metadata.xml b/sci-chemistry/autodock_vina/metadata.xml
index 3f44e973345..c5b5f6518be 100644
--- a/sci-chemistry/autodock_vina/metadata.xml
+++ b/sci-chemistry/autodock_vina/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/avogadro/metadata.xml b/sci-chemistry/avogadro/metadata.xml
index bacd1480b12..0db3a92885d 100644
--- a/sci-chemistry/avogadro/metadata.xml
+++ b/sci-chemistry/avogadro/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/azara/metadata.xml b/sci-chemistry/azara/metadata.xml
index c0432fefe85..07b19ef83cd 100644
--- a/sci-chemistry/azara/metadata.xml
+++ b/sci-chemistry/azara/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/babel/metadata.xml b/sci-chemistry/babel/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/babel/metadata.xml
+++ b/sci-chemistry/babel/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/balbes/metadata.xml b/sci-chemistry/balbes/metadata.xml
index 4bb6be5e5d0..86a281c82c1 100644
--- a/sci-chemistry/balbes/metadata.xml
+++ b/sci-chemistry/balbes/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/ball/metadata.xml b/sci-chemistry/ball/metadata.xml
index 066e13dd4a5..8aa9f142a09 100644
--- a/sci-chemistry/ball/metadata.xml
+++ b/sci-chemistry/ball/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/bkchem/metadata.xml b/sci-chemistry/bkchem/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/bkchem/metadata.xml
+++ b/sci-chemistry/bkchem/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/bodr/metadata.xml b/sci-chemistry/bodr/metadata.xml
index a30a888d000..4f4e62308aa 100644
--- a/sci-chemistry/bodr/metadata.xml
+++ b/sci-chemistry/bodr/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/burrow-owl/metadata.xml b/sci-chemistry/burrow-owl/metadata.xml
index 9849d77b137..7a13ba6ca1d 100644
--- a/sci-chemistry/burrow-owl/metadata.xml
+++ b/sci-chemistry/burrow-owl/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild b/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild
index d17c035cd3b..874aafc0061 100644
--- a/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild
+++ b/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild
@@ -10,7 +10,7 @@ MY_P="${MY_PN}_${PV}"
DESCRIPTION="Analysis of NMR spectra and Computer Aided Resonance Assignment"
SRC_URI="
http://www.cara.nmr-software.org/downloads/${MY_P}_linux.gz
- http://dev.gentoo.org/~jlec/distfiles//Start1.2.cara.xz"
+ https://dev.gentoo.org/~jlec/distfiles//Start1.2.cara.xz"
HOMEPAGE="http://www.nmr.ch"
LICENSE="CARA"
diff --git a/sci-chemistry/cara-bin/metadata.xml b/sci-chemistry/cara-bin/metadata.xml
index 4a00a64b40a..d3a09d38e18 100644
--- a/sci-chemistry/cara-bin/metadata.xml
+++ b/sci-chemistry/cara-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>jlec@gentoo.org</email>
diff --git a/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild b/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild
index 854cc48db0c..5e103213392 100644
--- a/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild
+++ b/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild
@@ -20,11 +20,11 @@ HOMEPAGE="http://www.ccp4.ac.uk/"
SRC="ftp://ftp.ccp4.ac.uk/ccp4"
SRC_URI="
${SRC}/${PV}/${MY_P}-core-src.tar.gz
- http://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2"
+ https://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2"
# patch tarball from upstream
[[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz"
# patches created by us
- [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2"
+ [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} https://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2"
for i in $(seq $PATCH_TOT); do
NAME="PATCH${i}[1]"
diff --git a/sci-chemistry/ccp4-apps/metadata.xml b/sci-chemistry/ccp4-apps/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/ccp4-apps/metadata.xml
+++ b/sci-chemistry/ccp4-apps/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/ccp4/metadata.xml b/sci-chemistry/ccp4/metadata.xml
index d37774eb9ad..7f1317f944c 100644
--- a/sci-chemistry/ccp4/metadata.xml
+++ b/sci-chemistry/ccp4/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild b/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild
index f5ac55ef17f..bdfba780049 100644
--- a/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild
+++ b/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild
@@ -21,9 +21,9 @@ HOMEPAGE="http://www.ccp4.ac.uk/"
SRC_URI="
${SRC}/${PV}/${MY_P}-core-src.tar.gz
mirror://gentoo/${P}-arpwarp.patch.bz2
- http://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2"
+ https://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2"
[[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz"
-[[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2"
+[[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} https://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2"
SLOT="0"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
diff --git a/sci-chemistry/ccp4i/metadata.xml b/sci-chemistry/ccp4i/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/ccp4i/metadata.xml
+++ b/sci-chemistry/ccp4i/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild
index 6768d790f14..1ed31b26509 100644
--- a/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild
@@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
[[ -n ${PATCHSET} ]] \
- && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+ && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
diff --git a/sci-chemistry/ccpn/ccpn-2.4.2.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2.ebuild
index b97807a88f3..07fc1ac4aba 100644
--- a/sci-chemistry/ccpn/ccpn-2.4.2.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.4.2.ebuild
@@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
[[ -n ${PATCHSET} ]] \
- && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+ && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild
index 6768d790f14..1ed31b26509 100644
--- a/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild
@@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
[[ -n ${PATCHSET} ]] \
- && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+ && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild
index 6768d790f14..1ed31b26509 100644
--- a/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild
@@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
[[ -n ${PATCHSET} ]] \
- && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+ && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild
index 6768d790f14..1ed31b26509 100644
--- a/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild
@@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
[[ -n ${PATCHSET} ]] \
- && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+ && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
diff --git a/sci-chemistry/ccpn/metadata.xml b/sci-chemistry/ccpn/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/ccpn/metadata.xml
+++ b/sci-chemistry/ccpn/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/chemical-mime-data/metadata.xml b/sci-chemistry/chemical-mime-data/metadata.xml
index 941ce487e86..0d1fc83dac0 100644
--- a/sci-chemistry/chemical-mime-data/metadata.xml
+++ b/sci-chemistry/chemical-mime-data/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/chemtool/metadata.xml b/sci-chemistry/chemtool/metadata.xml
index 26c25887342..b5b52fbefad 100644
--- a/sci-chemistry/chemtool/metadata.xml
+++ b/sci-chemistry/chemtool/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/clashlist/metadata.xml b/sci-chemistry/clashlist/metadata.xml
index c96b852229d..1cfa11ba032 100644
--- a/sci-chemistry/clashlist/metadata.xml
+++ b/sci-chemistry/clashlist/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/cluster/metadata.xml b/sci-chemistry/cluster/metadata.xml
index 76f6a5d9e46..4031454c042 100644
--- a/sci-chemistry/cluster/metadata.xml
+++ b/sci-chemistry/cluster/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/cns/metadata.xml b/sci-chemistry/cns/metadata.xml
index a9cb92ec3f7..763c888e85d 100644
--- a/sci-chemistry/cns/metadata.xml
+++ b/sci-chemistry/cns/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/coot/coot-0.7.1-r1.ebuild b/sci-chemistry/coot/coot-0.7.1-r1.ebuild
index c55da670520..001145ee18e 100644
--- a/sci-chemistry/coot/coot-0.7.1-r1.ebuild
+++ b/sci-chemistry/coot/coot-0.7.1-r1.ebuild
@@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple
HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
SRC_URI="
http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz
- test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
+ test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
diff --git a/sci-chemistry/coot/coot-0.7.2.ebuild b/sci-chemistry/coot/coot-0.7.2.ebuild
index 54e430017fc..ce619b5e434 100644
--- a/sci-chemistry/coot/coot-0.7.2.ebuild
+++ b/sci-chemistry/coot/coot-0.7.2.ebuild
@@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple
HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
SRC_URI="
http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz
- test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
+ test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
diff --git a/sci-chemistry/coot/coot-0.7.ebuild b/sci-chemistry/coot/coot-0.7.ebuild
index 2922f57bfe3..f5cdfa54b52 100644
--- a/sci-chemistry/coot/coot-0.7.ebuild
+++ b/sci-chemistry/coot/coot-0.7.ebuild
@@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple
HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
SRC_URI="
http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
- test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
+ test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
diff --git a/sci-chemistry/coot/metadata.xml b/sci-chemistry/coot/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/coot/metadata.xml
+++ b/sci-chemistry/coot/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/cyana/metadata.xml b/sci-chemistry/cyana/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/cyana/metadata.xml
+++ b/sci-chemistry/cyana/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/dssp/metadata.xml b/sci-chemistry/dssp/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/dssp/metadata.xml
+++ b/sci-chemistry/dssp/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/easychem/metadata.xml b/sci-chemistry/easychem/metadata.xml
index 0a2ea04beee..afc6b520063 100644
--- a/sci-chemistry/easychem/metadata.xml
+++ b/sci-chemistry/easychem/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/eden/metadata.xml b/sci-chemistry/eden/metadata.xml
index 732277b2b75..25e49248ee8 100644
--- a/sci-chemistry/eden/metadata.xml
+++ b/sci-chemistry/eden/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/elem/metadata.xml b/sci-chemistry/elem/metadata.xml
index 841c9b22af9..72e4f3e9d36 100644
--- a/sci-chemistry/elem/metadata.xml
+++ b/sci-chemistry/elem/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/freeon/metadata.xml b/sci-chemistry/freeon/metadata.xml
index eba82069680..e63adf63103 100644
--- a/sci-chemistry/freeon/metadata.xml
+++ b/sci-chemistry/freeon/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<longdescription lang="en">
FreeON is an experimental, open source (GPL) suite of programs for linear scaling quantum chemistry.
diff --git a/sci-chemistry/gabedit/metadata.xml b/sci-chemistry/gabedit/metadata.xml
index 574871e7938..33916a043c4 100644
--- a/sci-chemistry/gabedit/metadata.xml
+++ b/sci-chemistry/gabedit/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/gamess/metadata.xml b/sci-chemistry/gamess/metadata.xml
index 65e218a6882..32e0d3ce91f 100644
--- a/sci-chemistry/gamess/metadata.xml
+++ b/sci-chemistry/gamess/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>alexxy@gentoo.org</email>
diff --git a/sci-chemistry/gamessq/metadata.xml b/sci-chemistry/gamessq/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/gamessq/metadata.xml
+++ b/sci-chemistry/gamessq/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/gelemental/metadata.xml b/sci-chemistry/gelemental/metadata.xml
index d63987f1d9e..ddfa801148c 100644
--- a/sci-chemistry/gelemental/metadata.xml
+++ b/sci-chemistry/gelemental/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/ghemical/metadata.xml b/sci-chemistry/ghemical/metadata.xml
index 631ea739d03..35104ea8426 100644
--- a/sci-chemistry/ghemical/metadata.xml
+++ b/sci-chemistry/ghemical/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/gopenmol/metadata.xml b/sci-chemistry/gopenmol/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/gopenmol/metadata.xml
+++ b/sci-chemistry/gopenmol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/gperiodic/metadata.xml b/sci-chemistry/gperiodic/metadata.xml
index e87a8759836..41fe21bdc1f 100644
--- a/sci-chemistry/gperiodic/metadata.xml
+++ b/sci-chemistry/gperiodic/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/gromacs/metadata.xml b/sci-chemistry/gromacs/metadata.xml
index 083289348b0..f25494e021e 100644
--- a/sci-chemistry/gromacs/metadata.xml
+++ b/sci-chemistry/gromacs/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/gsim/metadata.xml b/sci-chemistry/gsim/metadata.xml
index 9ebe36a0718..53c81e1e9f2 100644
--- a/sci-chemistry/gsim/metadata.xml
+++ b/sci-chemistry/gsim/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/gtk-gamess/metadata.xml b/sci-chemistry/gtk-gamess/metadata.xml
index 0ddae2afddf..28837ecf26e 100644
--- a/sci-chemistry/gtk-gamess/metadata.xml
+++ b/sci-chemistry/gtk-gamess/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/hollow/metadata.xml b/sci-chemistry/hollow/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/hollow/metadata.xml
+++ b/sci-chemistry/hollow/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/icm-browser/metadata.xml b/sci-chemistry/icm-browser/metadata.xml
index 3cfdd8f6892..7b8de7786f4 100644
--- a/sci-chemistry/icm-browser/metadata.xml
+++ b/sci-chemistry/icm-browser/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/icm/metadata.xml b/sci-chemistry/icm/metadata.xml
index 55d880878df..38c8cae2a09 100644
--- a/sci-chemistry/icm/metadata.xml
+++ b/sci-chemistry/icm/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/imosflm/metadata.xml b/sci-chemistry/imosflm/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/imosflm/metadata.xml
+++ b/sci-chemistry/imosflm/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild b/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild
index 0112130458e..8cff18f777c 100644
--- a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild
+++ b/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild
@@ -13,7 +13,7 @@ DESCRIPTION="Java molecular viever for 3-D chemical structures"
HOMEPAGE="http://jmol.sourceforge.net/"
SRC_URI="
mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
- http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
+ https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
WEBAPP_MANUAL_SLOT="yes"
SLOT="0"
diff --git a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild b/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild
index 0e48dbb2d72..dd6d8f3c53e 100644
--- a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild
+++ b/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild
@@ -13,7 +13,7 @@ DESCRIPTION="Java molecular viever for 3-D chemical structures"
HOMEPAGE="http://jmol.sourceforge.net/"
SRC_URI="
mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
- http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
+ https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
LICENSE="LGPL-2.1"
KEYWORDS="~x86 ~amd64"
diff --git a/sci-chemistry/jmol/metadata.xml b/sci-chemistry/jmol/metadata.xml
index 9e4d1db2e0a..06363e3d066 100644
--- a/sci-chemistry/jmol/metadata.xml
+++ b/sci-chemistry/jmol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/ksdssp/metadata.xml b/sci-chemistry/ksdssp/metadata.xml
index 1837bbc07a6..7abf15ec3b9 100644
--- a/sci-chemistry/ksdssp/metadata.xml
+++ b/sci-chemistry/ksdssp/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/makecif/metadata.xml b/sci-chemistry/makecif/metadata.xml
index 993c1d1ffcd..d4c27a11694 100644
--- a/sci-chemistry/makecif/metadata.xml
+++ b/sci-chemistry/makecif/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mars/metadata.xml b/sci-chemistry/mars/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/mars/metadata.xml
+++ b/sci-chemistry/mars/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/massxpert/metadata.xml b/sci-chemistry/massxpert/metadata.xml
index a4137981114..88c9b68b439 100644
--- a/sci-chemistry/massxpert/metadata.xml
+++ b/sci-chemistry/massxpert/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mdanalysis/metadata.xml b/sci-chemistry/mdanalysis/metadata.xml
index 5ef07a39e7e..d614d19e3c2 100644
--- a/sci-chemistry/mdanalysis/metadata.xml
+++ b/sci-chemistry/mdanalysis/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
diff --git a/sci-chemistry/mead/metadata.xml b/sci-chemistry/mead/metadata.xml
index 9ac9ffdb3a4..9730805ca48 100644
--- a/sci-chemistry/mead/metadata.xml
+++ b/sci-chemistry/mead/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/metadata.xml b/sci-chemistry/metadata.xml
index c60d4c31553..aaf33941c41 100644
--- a/sci-chemistry/metadata.xml
+++ b/sci-chemistry/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE catmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<catmetadata>
<longdescription lang="en">
The sci-chemistry category contains software that can be used
diff --git a/sci-chemistry/mm-align/metadata.xml b/sci-chemistry/mm-align/metadata.xml
index 2634f696a95..ec69ed2d720 100644
--- a/sci-chemistry/mm-align/metadata.xml
+++ b/sci-chemistry/mm-align/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mm-align/mm-align-20120321.ebuild b/sci-chemistry/mm-align/mm-align-20120321.ebuild
index c0ef57c832a..7a0c7da5d89 100644
--- a/sci-chemistry/mm-align/mm-align-20120321.ebuild
+++ b/sci-chemistry/mm-align/mm-align-20120321.ebuild
@@ -8,7 +8,7 @@ inherit cmake-utils fortran-2
DESCRIPTION="Protein Complex Structural Alignment"
HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/MM-align/"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/MM-align-${PV}.tar.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/MM-align-${PV}.tar.xz"
SLOT="0"
LICENSE="tm-align"
diff --git a/sci-chemistry/molden/metadata.xml b/sci-chemistry/molden/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/molden/metadata.xml
+++ b/sci-chemistry/molden/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/moldy/metadata.xml b/sci-chemistry/moldy/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/moldy/metadata.xml
+++ b/sci-chemistry/moldy/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/molequeue/metadata.xml b/sci-chemistry/molequeue/metadata.xml
index e7326743bc3..aa367723bff 100644
--- a/sci-chemistry/molequeue/metadata.xml
+++ b/sci-chemistry/molequeue/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
diff --git a/sci-chemistry/molmol/metadata.xml b/sci-chemistry/molmol/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/molmol/metadata.xml
+++ b/sci-chemistry/molmol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/molrep/metadata.xml b/sci-chemistry/molrep/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/molrep/metadata.xml
+++ b/sci-chemistry/molrep/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild b/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild
index 3a0d7538b48..3373bbba6f9 100644
--- a/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild
+++ b/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild
@@ -8,7 +8,7 @@ inherit eutils flag-o-matic fortran-2 multilib toolchain-funcs
DESCRIPTION="molecular replacement program"
HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
LICENSE="ccp4"
SLOT="0"
diff --git a/sci-chemistry/molscript/metadata.xml b/sci-chemistry/molscript/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/molscript/metadata.xml
+++ b/sci-chemistry/molscript/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/molsketch/metadata.xml b/sci-chemistry/molsketch/metadata.xml
index 58bc5230b1a..97797187772 100644
--- a/sci-chemistry/molsketch/metadata.xml
+++ b/sci-chemistry/molsketch/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mongochem/metadata.xml b/sci-chemistry/mongochem/metadata.xml
index 411a151f03a..7fc3a2da68b 100644
--- a/sci-chemistry/mongochem/metadata.xml
+++ b/sci-chemistry/mongochem/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mopac7/metadata.xml b/sci-chemistry/mopac7/metadata.xml
index 839734dd5d8..6b133528cca 100644
--- a/sci-chemistry/mopac7/metadata.xml
+++ b/sci-chemistry/mopac7/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/mosflm/metadata.xml b/sci-chemistry/mosflm/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/mosflm/metadata.xml
+++ b/sci-chemistry/mosflm/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mpqc/metadata.xml b/sci-chemistry/mpqc/metadata.xml
index 6526df6225a..fbaefbdca5e 100644
--- a/sci-chemistry/mpqc/metadata.xml
+++ b/sci-chemistry/mpqc/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/mrbump/metadata.xml b/sci-chemistry/mrbump/metadata.xml
index 4aaae064be7..e8f071061fe 100644
--- a/sci-chemistry/mrbump/metadata.xml
+++ b/sci-chemistry/mrbump/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/msms-bin/metadata.xml b/sci-chemistry/msms-bin/metadata.xml
index 51426ab8d00..9a05a46c54e 100644
--- a/sci-chemistry/msms-bin/metadata.xml
+++ b/sci-chemistry/msms-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/mustang/metadata.xml b/sci-chemistry/mustang/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/mustang/metadata.xml
+++ b/sci-chemistry/mustang/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/namd/metadata.xml b/sci-chemistry/namd/metadata.xml
index c73650100be..6a666536b77 100644
--- a/sci-chemistry/namd/metadata.xml
+++ b/sci-chemistry/namd/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/nmrglue/metadata.xml b/sci-chemistry/nmrglue/metadata.xml
index d1c1fa8f056..7a10bb967ea 100644
--- a/sci-chemistry/nmrglue/metadata.xml
+++ b/sci-chemistry/nmrglue/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/numbat/metadata.xml b/sci-chemistry/numbat/metadata.xml
index 054dc8435cf..79660b19079 100644
--- a/sci-chemistry/numbat/metadata.xml
+++ b/sci-chemistry/numbat/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/oasis/metadata.xml b/sci-chemistry/oasis/metadata.xml
index 8412c2f3d31..c7bbdca506f 100644
--- a/sci-chemistry/oasis/metadata.xml
+++ b/sci-chemistry/oasis/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/oasis/oasis-4.0-r3.ebuild b/sci-chemistry/oasis/oasis-4.0-r3.ebuild
index 8c259f6be9a..98c8aaef47b 100644
--- a/sci-chemistry/oasis/oasis-4.0-r3.ebuild
+++ b/sci-chemistry/oasis/oasis-4.0-r3.ebuild
@@ -10,7 +10,7 @@ MY_P="${PN}${PV}_Linux"
DESCRIPTION="A direct-method program for SAD/SIR phasing"
HOMEPAGE="http://cryst.iphy.ac.cn/Project/protein/protein-I.html"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${MY_P}.zip"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${MY_P}.zip"
SLOT="0"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
index 068b6b2c444..f148d39fec4 100644
--- a/sci-chemistry/openbabel-perl/metadata.xml
+++ b/sci-chemistry/openbabel-perl/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml
index 2fec701db8f..f606bd9767e 100644
--- a/sci-chemistry/openbabel-python/metadata.xml
+++ b/sci-chemistry/openbabel-python/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index 3353dfa452a..7f952601263 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/ortep3/metadata.xml b/sci-chemistry/ortep3/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/ortep3/metadata.xml
+++ b/sci-chemistry/ortep3/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml
index bd602bd0e68..60d7e485b20 100644
--- a/sci-chemistry/p3d/metadata.xml
+++ b/sci-chemistry/p3d/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/parassign/metadata.xml b/sci-chemistry/parassign/metadata.xml
index 144ad6d646c..47e56c25699 100644
--- a/sci-chemistry/parassign/metadata.xml
+++ b/sci-chemistry/parassign/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pdb-extract/metadata.xml b/sci-chemistry/pdb-extract/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/pdb-extract/metadata.xml
+++ b/sci-chemistry/pdb-extract/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/pdb-tools/metadata.xml b/sci-chemistry/pdb-tools/metadata.xml
index 13e9a3c9397..766f449da23 100644
--- a/sci-chemistry/pdb-tools/metadata.xml
+++ b/sci-chemistry/pdb-tools/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pdb2pqr/metadata.xml b/sci-chemistry/pdb2pqr/metadata.xml
index 81003ba2152..f838e4e47b7 100644
--- a/sci-chemistry/pdb2pqr/metadata.xml
+++ b/sci-chemistry/pdb2pqr/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<use>
diff --git a/sci-chemistry/pdbcat/metadata.xml b/sci-chemistry/pdbcat/metadata.xml
index 54c920d084c..27bb8ad18b3 100644
--- a/sci-chemistry/pdbcat/metadata.xml
+++ b/sci-chemistry/pdbcat/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pdbcns/metadata.xml b/sci-chemistry/pdbcns/metadata.xml
index 1837bbc07a6..7abf15ec3b9 100644
--- a/sci-chemistry/pdbcns/metadata.xml
+++ b/sci-chemistry/pdbcns/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild b/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild
index 94b8c613884..5c83353ca2c 100644
--- a/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild
+++ b/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild
@@ -7,7 +7,7 @@ EAPI=4
DESCRIPTION="Convert atom names for common amino acids and nucleic acid bases from PDB format to CNS or back"
HOMEPAGE="http://www.mybiosoftware.com/3d-molecular-model/314/"
#SRC_URI="http://kinemage.biochem.duke.edu/php/downlode.php?filename=/downloads/software/scripts/${PN}.${PV}.perl.tgz"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${PN}.${PV}.perl.tgz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${PN}.${PV}.perl.tgz"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-chemistry/pdbmat/metadata.xml b/sci-chemistry/pdbmat/metadata.xml
index d542eb59e00..b0168b1c4b0 100644
--- a/sci-chemistry/pdbmat/metadata.xml
+++ b/sci-chemistry/pdbmat/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/phaser/metadata.xml b/sci-chemistry/phaser/metadata.xml
index 6b4826474da..66f6e76532a 100644
--- a/sci-chemistry/phaser/metadata.xml
+++ b/sci-chemistry/phaser/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/platon/metadata.xml b/sci-chemistry/platon/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/platon/metadata.xml
+++ b/sci-chemistry/platon/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/pointless/metadata.xml b/sci-chemistry/pointless/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/pointless/metadata.xml
+++ b/sci-chemistry/pointless/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/povscript+/metadata.xml b/sci-chemistry/povscript+/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/povscript+/metadata.xml
+++ b/sci-chemistry/povscript+/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/prekin/metadata.xml b/sci-chemistry/prekin/metadata.xml
index 9ac9ffdb3a4..9730805ca48 100644
--- a/sci-chemistry/prekin/metadata.xml
+++ b/sci-chemistry/prekin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/probe/metadata.xml b/sci-chemistry/probe/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/probe/metadata.xml
+++ b/sci-chemistry/probe/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/procheck/metadata.xml b/sci-chemistry/procheck/metadata.xml
index b3618ba38c1..3f9e558188f 100644
--- a/sci-chemistry/procheck/metadata.xml
+++ b/sci-chemistry/procheck/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/prodecomp/metadata.xml b/sci-chemistry/prodecomp/metadata.xml
index a91e9092dc5..9b377796e6b 100644
--- a/sci-chemistry/prodecomp/metadata.xml
+++ b/sci-chemistry/prodecomp/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/propka/metadata.xml b/sci-chemistry/propka/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/propka/metadata.xml
+++ b/sci-chemistry/propka/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/propka/propka-3.1_p140511.ebuild b/sci-chemistry/propka/propka-3.1_p140511.ebuild
index d390752866d..0a772f6cc8d 100644
--- a/sci-chemistry/propka/propka-3.1_p140511.ebuild
+++ b/sci-chemistry/propka/propka-3.1_p140511.ebuild
@@ -10,7 +10,7 @@ inherit distutils-r1
DESCRIPTION="Prediction of the pKa values of ionizable groups in proteins and protein-ligand complexes"
HOMEPAGE="http://propka.ki.ku.dk/"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="all-rights-reserved"
diff --git a/sci-chemistry/psi/metadata.xml b/sci-chemistry/psi/metadata.xml
index 3774ad2a405..40376c5cf96 100644
--- a/sci-chemistry/psi/metadata.xml
+++ b/sci-chemistry/psi/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/pymol-apbs-plugin/metadata.xml b/sci-chemistry/pymol-apbs-plugin/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/pymol-apbs-plugin/metadata.xml
+++ b/sci-chemistry/pymol-apbs-plugin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-bni-tools/metadata.xml b/sci-chemistry/pymol-plugins-bni-tools/metadata.xml
index c4982f1db5f..d6394ab3177 100644
--- a/sci-chemistry/pymol-plugins-bni-tools/metadata.xml
+++ b/sci-chemistry/pymol-plugins-bni-tools/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-caver/metadata.xml b/sci-chemistry/pymol-plugins-caver/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/pymol-plugins-caver/metadata.xml
+++ b/sci-chemistry/pymol-plugins-caver/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/pymol-plugins-dssp/metadata.xml b/sci-chemistry/pymol-plugins-dssp/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/pymol-plugins-dssp/metadata.xml
+++ b/sci-chemistry/pymol-plugins-dssp/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild
index bc129c005d8..a27eea7789d 100644
--- a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild
+++ b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild
@@ -10,7 +10,7 @@ inherit python-r1
DESCRIPTION="DSSP Plugin for PyMOL"
HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/dssp_pymol/dssp_pymol.html"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.py.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.py.xz"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild
index 4bdb53a1019..9a85ed05c89 100644
--- a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild
+++ b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild
@@ -12,7 +12,7 @@ inherit python
DESCRIPTION="DSSP Plugin for PyMOL"
HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/dssp_pymol/dssp_pymol.html"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.py.xz"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.py.xz"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-chemistry/pymol-plugins-dynamics/metadata.xml b/sci-chemistry/pymol-plugins-dynamics/metadata.xml
index 78402e14de8..83a9bec75c3 100644
--- a/sci-chemistry/pymol-plugins-dynamics/metadata.xml
+++ b/sci-chemistry/pymol-plugins-dynamics/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-emovie/metadata.xml b/sci-chemistry/pymol-plugins-emovie/metadata.xml
index 18330bb401f..db4994c2698 100644
--- a/sci-chemistry/pymol-plugins-emovie/metadata.xml
+++ b/sci-chemistry/pymol-plugins-emovie/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-msms/metadata.xml b/sci-chemistry/pymol-plugins-msms/metadata.xml
index c6f92c96834..12b4df0f073 100644
--- a/sci-chemistry/pymol-plugins-msms/metadata.xml
+++ b/sci-chemistry/pymol-plugins-msms/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol-plugins-promol/metadata.xml b/sci-chemistry/pymol-plugins-promol/metadata.xml
index 4a00a64b40a..d3a09d38e18 100644
--- a/sci-chemistry/pymol-plugins-promol/metadata.xml
+++ b/sci-chemistry/pymol-plugins-promol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>jlec@gentoo.org</email>
diff --git a/sci-chemistry/pymol-plugins-psico/metadata.xml b/sci-chemistry/pymol-plugins-psico/metadata.xml
index 3eff7c70cfe..4c9c6994c05 100644
--- a/sci-chemistry/pymol-plugins-psico/metadata.xml
+++ b/sci-chemistry/pymol-plugins-psico/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol/metadata.xml b/sci-chemistry/pymol/metadata.xml
index ace2d8e58ce..df6abab3919 100644
--- a/sci-chemistry/pymol/metadata.xml
+++ b/sci-chemistry/pymol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/pymol/pymol-1.7.0.1.ebuild b/sci-chemistry/pymol/pymol-1.7.0.1.ebuild
index fbd2fd858c8..d71b5abbd9e 100644
--- a/sci-chemistry/pymol/pymol-1.7.0.1.ebuild
+++ b/sci-chemistry/pymol/pymol-1.7.0.1.ebuild
@@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime versionator
DESCRIPTION="A Python-extensible molecular graphics system"
HOMEPAGE="http://www.pymol.org/"
SRC_URI="
- http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
- http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
+ https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
+ https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
"
# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
diff --git a/sci-chemistry/pymol/pymol-1.7.4.0.ebuild b/sci-chemistry/pymol/pymol-1.7.4.0.ebuild
index 20f49ba45a5..483660011e5 100644
--- a/sci-chemistry/pymol/pymol-1.7.4.0.ebuild
+++ b/sci-chemistry/pymol/pymol-1.7.4.0.ebuild
@@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime versionator
DESCRIPTION="A Python-extensible molecular graphics system"
HOMEPAGE="http://www.pymol.org/"
SRC_URI="
- http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
- http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
+ https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
+ https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
"
# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
# git archive -v --prefix=${P}/ master -o ${P}.tar.xz
diff --git a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild
index d3ec32637ce..4c0590e1e5e 100644
--- a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild
+++ b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild
@@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime flag-o-matic versionator
DESCRIPTION="A Python-extensible molecular graphics system"
HOMEPAGE="http://www.pymol.org/"
SRC_URI="
- http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
- http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
+ https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
+ https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
"
# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
# git archive -v --prefix=${P}/ master -o ${P}.tar.xz
diff --git a/sci-chemistry/rasmol/metadata.xml b/sci-chemistry/rasmol/metadata.xml
index b06ec8f7a2f..31c6764061f 100644
--- a/sci-chemistry/rasmol/metadata.xml
+++ b/sci-chemistry/rasmol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/raster3d/metadata.xml b/sci-chemistry/raster3d/metadata.xml
index 2a6e4b56f96..cf38b1697e5 100644
--- a/sci-chemistry/raster3d/metadata.xml
+++ b/sci-chemistry/raster3d/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/reduce/metadata.xml b/sci-chemistry/reduce/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/reduce/metadata.xml
+++ b/sci-chemistry/reduce/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/refmac/metadata.xml b/sci-chemistry/refmac/metadata.xml
index c0432fefe85..07b19ef83cd 100644
--- a/sci-chemistry/refmac/metadata.xml
+++ b/sci-chemistry/refmac/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/relax/metadata.xml b/sci-chemistry/relax/metadata.xml
index 617e574f7c3..868c2bce86f 100644
--- a/sci-chemistry/relax/metadata.xml
+++ b/sci-chemistry/relax/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/scala/metadata.xml b/sci-chemistry/scala/metadata.xml
index 2c9359ab351..6cd1681d4e3 100644
--- a/sci-chemistry/scala/metadata.xml
+++ b/sci-chemistry/scala/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/sfcheck/metadata.xml b/sci-chemistry/sfcheck/metadata.xml
index 9ac9ffdb3a4..9730805ca48 100644
--- a/sci-chemistry/sfcheck/metadata.xml
+++ b/sci-chemistry/sfcheck/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/shelx/metadata.xml b/sci-chemistry/shelx/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/shelx/metadata.xml
+++ b/sci-chemistry/shelx/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/solve-resolve-bin/metadata.xml b/sci-chemistry/solve-resolve-bin/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/solve-resolve-bin/metadata.xml
+++ b/sci-chemistry/solve-resolve-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/sparky/metadata.xml b/sci-chemistry/sparky/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/sparky/metadata.xml
+++ b/sci-chemistry/sparky/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml
index 06ac91e5fb9..1b3f34778eb 100644
--- a/sci-chemistry/suitename/metadata.xml
+++ b/sci-chemistry/suitename/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/surf/metadata.xml b/sci-chemistry/surf/metadata.xml
index 9ac9ffdb3a4..9730805ca48 100644
--- a/sci-chemistry/surf/metadata.xml
+++ b/sci-chemistry/surf/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/theseus/metadata.xml b/sci-chemistry/theseus/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/theseus/metadata.xml
+++ b/sci-chemistry/theseus/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/threeV/metadata.xml b/sci-chemistry/threeV/metadata.xml
index 043cc752747..fd3a748e4cd 100644
--- a/sci-chemistry/threeV/metadata.xml
+++ b/sci-chemistry/threeV/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/tinker/metadata.xml b/sci-chemistry/tinker/metadata.xml
index e42d0af60f4..81cadec1459 100644
--- a/sci-chemistry/tinker/metadata.xml
+++ b/sci-chemistry/tinker/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/tm-align/metadata.xml b/sci-chemistry/tm-align/metadata.xml
index 1e724495b8e..1501fd807da 100644
--- a/sci-chemistry/tm-align/metadata.xml
+++ b/sci-chemistry/tm-align/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/viewmol/metadata.xml b/sci-chemistry/viewmol/metadata.xml
index c23d7012cd0..e342134e97f 100644
--- a/sci-chemistry/viewmol/metadata.xml
+++ b/sci-chemistry/viewmol/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<upstream>
diff --git a/sci-chemistry/vmd/metadata.xml b/sci-chemistry/vmd/metadata.xml
index 4b17d8d6b91..4d4cc470059 100644
--- a/sci-chemistry/vmd/metadata.xml
+++ b/sci-chemistry/vmd/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>alexxy@gentoo.org</email>
diff --git a/sci-chemistry/vmd/vmd-1.9.2.ebuild b/sci-chemistry/vmd/vmd-1.9.2.ebuild
index 78e084df58e..c9647a194b7 100644
--- a/sci-chemistry/vmd/vmd-1.9.2.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.2.ebuild
@@ -11,7 +11,7 @@ inherit cuda eutils flag-o-matic multilib prefix python-single-r1 toolchain-func
DESCRIPTION="Visual Molecular Dynamics"
HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
SRC_URI="
- http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz
+ https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz
${P}.src.tar.gz"
SLOT="0"
@@ -59,7 +59,7 @@ pkg_nofetch() {
elog "Please download ${P}.src.tar.gz from"
elog "${VMD_DOWNLOAD}"
elog "after agreeing to the license and get"
- elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz"
+ elog "https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz"
elog "Place both in ${DISTDIR}"
}
diff --git a/sci-chemistry/votca-csg/metadata.xml b/sci-chemistry/votca-csg/metadata.xml
index a7bc0762f8d..b05af7b7abf 100644
--- a/sci-chemistry/votca-csg/metadata.xml
+++ b/sci-chemistry/votca-csg/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/votca-csgapps/metadata.xml b/sci-chemistry/votca-csgapps/metadata.xml
index 40959c87ed5..4dd72cf8810 100644
--- a/sci-chemistry/votca-csgapps/metadata.xml
+++ b/sci-chemistry/votca-csgapps/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/wxmacmolplt/metadata.xml b/sci-chemistry/wxmacmolplt/metadata.xml
index cd9831eb3c5..dd7625c3508 100644
--- a/sci-chemistry/wxmacmolplt/metadata.xml
+++ b/sci-chemistry/wxmacmolplt/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<longdescription>
diff --git a/sci-chemistry/xds-bin/metadata.xml b/sci-chemistry/xds-bin/metadata.xml
index 51fdedab1b3..a0eaf4634a9 100644
--- a/sci-chemistry/xds-bin/metadata.xml
+++ b/sci-chemistry/xds-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/xdsgui/metadata.xml b/sci-chemistry/xdsgui/metadata.xml
index f80752c4078..20002706161 100644
--- a/sci-chemistry/xdsgui/metadata.xml
+++ b/sci-chemistry/xdsgui/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/xdsi/metadata.xml b/sci-chemistry/xdsi/metadata.xml
index 431fb2be13b..5fa279c866d 100644
--- a/sci-chemistry/xdsi/metadata.xml
+++ b/sci-chemistry/xdsi/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/xdsstat-bin/metadata.xml b/sci-chemistry/xdsstat-bin/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/xdsstat-bin/metadata.xml
+++ b/sci-chemistry/xdsstat-bin/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>
diff --git a/sci-chemistry/xia2/metadata.xml b/sci-chemistry/xia2/metadata.xml
index 9ac9ffdb3a4..9730805ca48 100644
--- a/sci-chemistry/xia2/metadata.xml
+++ b/sci-chemistry/xia2/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>
diff --git a/sci-chemistry/xyza2pipe/metadata.xml b/sci-chemistry/xyza2pipe/metadata.xml
index ae9ec7c5f6a..27367a8f876 100644
--- a/sci-chemistry/xyza2pipe/metadata.xml
+++ b/sci-chemistry/xyza2pipe/metadata.xml
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
<maintainer>