proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 134 insertions, 0 deletions

diff --git a/sci-mathematics/Macaulay2/files/1.6-lapack.patch b/sci-mathematics/Macaulay2/files/1.6-lapack.patch
new file mode 100644
index 000000000000..e9a434eeb28e
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/1.6-lapack.patch
@@ -0,0 +1,50 @@
+--- configure.ac	2012-10-24 09:29:55.240498786 -0700
++++ configure.ac.2	2012-10-30 15:07:27.172846300 -0700
+@@ -1285,46 +1285,7 @@
+ done
+ test $BUILD_factory = yes && BUILTLIBS="$SINGULARLIBS $BUILTLIBS"
+ 
+-# we need to do the fortran library testing last, in case AC_SEARCH_LIBS adds
+-# one of them to $LIBS, making it impossible to check for the presence of C or
+-# C++ libraries.  (I'm not sure why putting -llapack on the gcc command line
+-# needlessly causes the library to be linked against.)
+-FORTRANUSED=no
+-if test "$LAPACK" = yes
+-then AC_MSG_CHECKING([whether the vecLib framework is available])
+-     SAVELIBS=$LIBS LIBS="-framework vecLib $LIBS"
+-     AC_LANG(C)
+-     AC_LINK_IFELSE(
+-	 [AC_LANG_PROGRAM(,[sgemv_();dgetrf_();])],
+-	 [
+-	     AC_MSG_RESULT(yes)
+-	     ],
+-	 [
+-	     AC_MSG_RESULT(no)
+-	     LIBS=$SAVELIBS
+-	     FORTRANUSED=yes
+-	     if test $BUILD_lapack = no
+-	     then AC_LANG(Fortran)
+-	     	  if test "$FC" = ""
+-		  then AC_MSG_ERROR(no fortran compiler found)
+-		  else AC_MSG_NOTICE(using fortran compiler $FC)
+-		  fi
+-		  AC_SEARCH_LIBS(sgemv,blas f77blas,,BUILD_lapack=yes)
+-		  AC_SEARCH_LIBS(dgetrf,lapack,,BUILD_lapack=yes)
+-	     fi
+-	 ])
+-fi
+-test $BUILD_lapack = yes && BUILTLIBS="-llapack -lblas $BUILTLIBS"
+-
+-if test $BUILD_lapack = yes
+-then # test whether the fortran compiler can handle lapack, which, starting with
+-     # version 3.2, requires fortran 90, not fortran 77
+-    AC_LANG(Fortran)
+-    AC_MSG_CHECKING([whether the fortran compiler is modern enough for lapack])
+-    AC_COMPILE_IFELSE([instrinsic maxloc],
+-	AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack),
+-	AC_MSG_RESULT(yes))
+-fi
++BUILTLIBS="$(${PKG_CONFIG} --libs lapack) $BUILTLIBS"
+ 
+ if test $BUILD_memtailor = yes
+ then BUILTLIBS="-lmemtailor $BUILTLIBS"
diff --git a/sci-mathematics/Macaulay2/files/1.6-paths-of-external-programs.patch b/sci-mathematics/Macaulay2/files/1.6-paths-of-external-programs.patch
new file mode 100644
index 000000000000..4c090deec9d8
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/1.6-paths-of-external-programs.patch
@@ -0,0 +1,73 @@
+diff -U 3 -dHrN M2source/Macaulay2/packages/FourTiTwo.m2 M2source.patch/Macaulay2/packages/FourTiTwo.m2
+--- M2source/Macaulay2/packages/FourTiTwo.m2	2011-09-22 14:36:51.000000000 +0100
++++ M2source.patch/Macaulay2/packages/FourTiTwo.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -47,7 +47,7 @@
+ 
+ path'4ti2 = (options FourTiTwo).Configuration#"path"
+ -- NOTE: the absolute path should be put into the .init file for 4ti2 inside the .Macaulay2 directory.
+-if path'4ti2 == "" then path'4ti2 = prefixDirectory | currentLayout#"programs"
++if path'4ti2 == "" then path'4ti2 = "/usr/bin/"
+ 
+ getFilename = () -> (
+      filename := temporaryFileName();
+diff -U 3 -dHrN M2source/Macaulay2/packages/gfanInterface.m2 M2source.patch/Macaulay2/packages/gfanInterface.m2
+--- M2source/Macaulay2/packages/gfanInterface.m2	2011-05-14 12:00:59.000000000 +0100
++++ M2source.patch/Macaulay2/packages/gfanInterface.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -25,7 +25,7 @@
+      }
+ 
+ gfan'path = gfanInterface#Options#Configuration#"path"
+-if gfan'path == "" then gfan'path = prefixDirectory | currentLayout#"programs"
++if gfan'path == "" then gfan'path = "/usr/bin/"
+ if instance(gfan'path, String) then gfan'path = {gfan'path}
+ if not instance(gfan'path,List) then error "expected configuration option gfan'path to be a list of strings or a string"
+ gfan'path = join(
+diff -U 3 -dHrN M2source/Macaulay2/packages/NautyGraphs.m2 M2source.patch/Macaulay2/packages/NautyGraphs.m2
+--- M2source/Macaulay2/packages/NautyGraphs.m2	2011-08-26 11:05:30.000000000 +0100
++++ M2source.patch/Macaulay2/packages/NautyGraphs.m2	2011-09-24 21:25:53.000000000 +0100
+@@ -32,7 +32,7 @@
+ -- Check the ~/.Macaulay2/init-NautyGraphs.m2 file for the absolute path.
+ -- If it's not there, then use the M2-Programs directory.
+ nauty'path = (options NautyGraphs).Configuration#"path";
+-if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
++if nauty'path == "" then nauty'path = "/usr/bin/";
+ 
+ -------------------
+ -- Exports
+diff -U 3 -dHrN M2source/Macaulay2/packages/Nauty.m2 M2source.patch/Macaulay2/packages/Nauty.m2
+--- M2source/Macaulay2/packages/Nauty.m2	2011-08-26 11:05:30.000000000 +0100
++++ M2source.patch/Macaulay2/packages/Nauty.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -48,7 +48,8 @@
+ -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path.
+ -- If it's not there, then use the M2-Programs directory.
+ nauty'path = (options Nauty).Configuration#"path";
+-if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
++if nauty'path == "" then nauty'path = "/usr/bin/";
++
+ 
+ -------------------
+ -- Exports
+diff -U 3 -dHrN M2source/Macaulay2/packages/Normaliz.m2 M2source.patch/Macaulay2/packages/Normaliz.m2
+--- M2source/Macaulay2/packages/Normaliz.m2	2011-05-25 16:47:50.000000000 +0100
++++ M2source.patch/Macaulay2/packages/Normaliz.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -166,7 +166,7 @@
+         nmzExec="normaliz";
+     );
+ --    return nmzExec;
+-    return prefixDirectory | currentLayout#"programs" | nmzExec;
++    return "/usr/bin/" | nmzExec;
+ );
+ 
+ 
+diff -U 3 -dHrN M2source/Macaulay2/packages/StatePolytope.m2 M2source.patch/Macaulay2/packages/StatePolytope.m2
+--- M2source/Macaulay2/packages/StatePolytope.m2	2010-09-10 16:47:20.000000000 +0100
++++ M2source.patch/Macaulay2/packages/StatePolytope.m2	2011-09-24 21:24:12.000000000 +0100
+@@ -31,7 +31,7 @@
+ 
+ 
+ gfanCommand = (options StatePolytope)#Configuration#"gfan command"
+-if gfanCommand === "gfan" then gfanCommand = prefixDirectory | currentLayout#"programs" | gfanCommand
++if gfanCommand === "gfan" then gfanCommand = "/usr/bin/" | gfanCommand
+ gfanCommand = "!" | gfanCommand
+ 
+ --The next two functions print out the ring and the ideal in the format required by gfan
diff --git a/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el b/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el
new file mode 100644
index 000000000000..ac86e2132ed5
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/70Macaulay2-gentoo.el
@@ -0,0 +1,11 @@
+;; sci-mathematics/Macaulay2 init file
+
+(add-to-list 'load-path "/usr/share/emacs/site-lisp/Macaulay2")
+
+(defvar M2-exe "/usr/bin/M2" "*The default Macaulay2 executable name.")
+(autoload 'M2 "M2.el" "Run Macaulay 2 in a buffer." t)
+(autoload 'Macaulay2 "M2" "Run Macaulay 2 in a buffer, non-interactive." t)
+(autoload 'M2-mode "M2" "Macaulay 2 editing mode" t)
+(autoload 'm2-mode "M2" "Macaulay 2 editing mode, name in lower case" t)
+(autoload 'm2-comint-mode "M2" "Macaulay 2 command interpreter mode, name in lower case" t)
+(setq auto-mode-alist (append auto-mode-alist '(("\\.m2$" . M2-mode))))
\ No newline at end of file