diff options
| author |   Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
|---|---|---|
| committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
| commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
| tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-physics | |
| download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip | |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-physics')
202 files changed, 11770 insertions, 0 deletions
diff --git a/sci-physics/bullet/Manifest b/sci-physics/bullet/Manifest new file mode 100644 index 000000000000..659ad7796d26 --- /dev/null +++ b/sci-physics/bullet/Manifest @@ -0,0 +1,4 @@ +DIST bullet-2.80-rev2531.tgz 9561231 SHA256 464e2d79e3c5a5bdcad597ef6fca26d4244ad83628d8663e03be7c89d0342f36 SHA512 ca61182b20f692a0163aa230d6025b0dc1863ecdd5f6f3c80589a41997464a347ef1b1ab4923a2136a68d5b42ff864e98a9aa00da8bc493a1339bf309a876cca WHIRLPOOL 3186449ffea858b33cf606bee3c27e15dda4fb945d21d75b4ad4dfdf849181526bef06e0d3b35fc51b27815d229472a9b95f85b108b79315c251811105e0755a +DIST bullet-2.81-rev2613.tgz 8297547 SHA256 8ac9079803a6f793801727ccddb0b98becea3efe92fd6590cf38b9cb8bbc1eed SHA512 5f77d4ea123bca06a390e27f5028d67b1f328c65d16711448cca885bc66de37bdef3024397603140e28e8fe68679cc596aa9a4ee617fc2a913f23d4c5c0f52a3 WHIRLPOOL 91894b76cb3cd4239f91305860cf78152c323df05c4b1d77bb8564cd2badb8a7e811f8dcf7e10f9b04db5345787b3c2cb0163d0ef9c77aa716e69307a235873a +DIST bullet-2.82-r2704.tgz 7937108 SHA256 67e4c9eb76f7adf99501d726d8ad5e9b525dfd0843fbce9ca73aaca4ba9eced2 SHA512 44bec0bd74e6d9cd8c75a41d0faa068dc05f0cdad92ff001cc53ff29912db245606827a9e763ce2cf1b551b545668a779fdc4455f73c1901b57aaa4eee31901f WHIRLPOOL 181c6bf35ba28333f66fba52faff2e7bfc634a702df4c9925123160d89058602e354e9c21a82c86fc166fab55254a70739e37220d28968a989ed94a52a6f7e39 +DIST bullet-2.83.4.tar.gz 17529283 SHA256 2cf287cead9a116c56f6d6f15f73dc8b3ed1fe407ef2ca894027d585fab07341 SHA512 1a10a11671bd152835a45d44a1b3214e29c255338405705f2aaa41adfbdb545ec02f09b94003b836fafcc2b59b836e5b749696a5bb3489ec7050af0d02d9b2e1 WHIRLPOOL 7a472291128888fdd1c96e232b91d734ff10c2b6cf6ff0563bd3e6fa4c113112fe3f169dc0e42fee56aacf66b6717a10901f0c61c618a6c691bf1eb3cbcefbf2 diff --git a/sci-physics/bullet/bullet-2.80.ebuild b/sci-physics/bullet/bullet-2.80.ebuild new file mode 100644 index 000000000000..ef97ddf709bc --- /dev/null +++ b/sci-physics/bullet/bullet-2.80.ebuild @@ -0,0 +1,63 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils cmake-utils + +# version release, check http://code.google.com/p/bullet/downloads/list +MYP=${P}-rev2531 + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="http://bullet.googlecode.com/files/${MYP}.tgz" + +LICENSE="ZLIB" +SLOT="0" +KEYWORDS="amd64 ~ppc64 x86 ~amd64-linux ~x86-linux" +IUSE="doc double-precision examples extras" + +RDEPEND="virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${MYP}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc *.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras Demos + fi +} diff --git a/sci-physics/bullet/bullet-2.81.ebuild b/sci-physics/bullet/bullet-2.81.ebuild new file mode 100644 index 000000000000..a094785a735c --- /dev/null +++ b/sci-physics/bullet/bullet-2.81.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils cmake-utils + +# version release, check http://code.google.com/p/bullet/downloads/list +MYP=${P}-rev2613 + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="http://bullet.googlecode.com/files/${MYP}.tgz" + +LICENSE="ZLIB" +SLOT="0" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc double-precision examples extras" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${MYP}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc *.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras Demos + fi +} diff --git a/sci-physics/bullet/bullet-2.82.ebuild b/sci-physics/bullet/bullet-2.82.ebuild new file mode 100644 index 000000000000..4f4c049f98ba --- /dev/null +++ b/sci-physics/bullet/bullet-2.82.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils cmake-utils + +# version release, check http://code.google.com/p/bullet/downloads/list +MYP=${P}-r2704 + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="http://bullet.googlecode.com/files/${MYP}.tgz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc double-precision examples extras" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${MYP}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc *.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras Demos + fi +} diff --git a/sci-physics/bullet/bullet-2.83.4.ebuild b/sci-physics/bullet/bullet-2.83.4.ebuild new file mode 100644 index 000000000000..c714c7226a8d --- /dev/null +++ b/sci-physics/bullet/bullet-2.83.4.ebuild @@ -0,0 +1,63 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils cmake-utils + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="https://github.com/bulletphysics/bullet3/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bullet3 doc double-precision examples extras" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${PN}3-${PV}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_OPENGL3_DEMOS=OFF + -DBUILD_BULLET2_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build bullet3 BULLET3) + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc docs/*.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras examples + fi +} diff --git a/sci-physics/bullet/files/bullet-2.77-gcc46.patch b/sci-physics/bullet/files/bullet-2.77-gcc46.patch new file mode 100644 index 000000000000..9ef054836e33 --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.77-gcc46.patch @@ -0,0 +1,47 @@ + src/BulletSoftBody/btSoftBody.h | 3 +++ + src/BulletSoftBody/btSoftBodyInternals.h | 4 ++-- + 2 files changed, 5 insertions(+), 2 deletions(-) + +diff --git a/src/BulletSoftBody/btSoftBody.h b/src/BulletSoftBody/btSoftBody.h +index 4d975b7..f781598 100644 +--- a/src/BulletSoftBody/btSoftBody.h ++++ b/src/BulletSoftBody/btSoftBody.h +@@ -30,6 +30,7 @@ subject to the following restrictions: + class btBroadphaseInterface; + class btDispatcher; + ++class btSoftBodySolver; + + /* btSoftBodyWorldInfo */ + struct btSoftBodyWorldInfo +@@ -52,6 +53,8 @@ class btSoftBody : public btCollisionObject + public: + btAlignedObjectArray<class btCollisionObject*> m_collisionDisabledObjects; + ++ // The solver object that handles this soft body ++ btSoftBodySolver *m_softBodySolver; + // + // Enumerations + // +diff --git a/src/BulletSoftBody/btSoftBodyInternals.h b/src/BulletSoftBody/btSoftBodyInternals.h +index 2cb7744..296d97a 100644 +--- a/src/BulletSoftBody/btSoftBodyInternals.h ++++ b/src/BulletSoftBody/btSoftBodyInternals.h +@@ -26,6 +26,7 @@ subject to the following restrictions: + #include "BulletCollision/CollisionShapes/btConvexInternalShape.h" + #include "BulletCollision/NarrowPhaseCollision/btGjkEpa2.h" + ++#include <string.h> //for memset + // + // btSymMatrix + // +@@ -172,8 +173,7 @@ public: + template <typename T> + static inline void ZeroInitialize(T& value) + { +- static const T zerodummy; +- value=zerodummy; ++ memset(&value,0,sizeof(T)); + } + // + template <typename T> diff --git a/sci-physics/bullet/files/bullet-2.77-libdir.patch b/sci-physics/bullet/files/bullet-2.77-libdir.patch new file mode 100644 index 000000000000..9575addbb58c --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.77-libdir.patch @@ -0,0 +1,24 @@ +diff -up bullet-2.77/src/BulletMultiThreaded/CMakeLists.txt.lib bullet-2.77/src/BulletMultiThreaded/CMakeLists.txt +--- bullet-2.77/src/BulletMultiThreaded/CMakeLists.txt.lib 2010-10-08 12:45:59.000000000 +0200 ++++ bullet-2.77/src/BulletMultiThreaded/CMakeLists.txt 2010-10-08 12:46:26.000000000 +0200 +@@ -84,7 +84,7 @@ IF (INSTALL_LIBS) + IF (APPLE AND BUILD_SHARED_LIBS AND FRAMEWORK) + INSTALL(TARGETS BulletMultiThreaded DESTINATION .) + ELSE (APPLE AND BUILD_SHARED_LIBS AND FRAMEWORK) +- INSTALL(TARGETS BulletMultiThreaded DESTINATION lib) ++ INSTALL(TARGETS BulletMultiThreaded DESTINATION lib${LIB_SUFFIX}) + INSTALL(DIRECTORY + ${CMAKE_CURRENT_SOURCE_DIR} DESTINATION ${INCLUDE_INSTALL_DIR} FILES_MATCHING + PATTERN "*.h" PATTERN ".svn" EXCLUDE PATTERN "CMakeFiles" EXCLUDE) +diff -up bullet-2.77/src/MiniCL/CMakeLists.txt.lib bullet-2.77/src/MiniCL/CMakeLists.txt +--- bullet-2.77/src/MiniCL/CMakeLists.txt.lib 2010-10-08 12:44:50.000000000 +0200 ++++ bullet-2.77/src/MiniCL/CMakeLists.txt 2010-10-08 12:46:42.000000000 +0200 +@@ -32,7 +32,7 @@ IF (INSTALL_LIBS)
+ IF (APPLE AND BUILD_SHARED_LIBS AND FRAMEWORK)
+ INSTALL(TARGETS MiniCL DESTINATION .)
+ ELSE (APPLE AND BUILD_SHARED_LIBS AND FRAMEWORK)
+- INSTALL(TARGETS MiniCL DESTINATION lib)
++ INSTALL(TARGETS MiniCL DESTINATION lib${LIB_SUFFIX})
+ INSTALL(DIRECTORY
+ ${CMAKE_CURRENT_SOURCE_DIR} DESTINATION ${INCLUDE_INSTALL_DIR} FILES_MATCHING
+ PATTERN "*.h" PATTERN ".svn" EXCLUDE PATTERN "CMakeFiles" EXCLUDE)
diff --git a/sci-physics/bullet/files/bullet-2.77-soversion.patch b/sci-physics/bullet/files/bullet-2.77-soversion.patch new file mode 100644 index 000000000000..6086640790ac --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.77-soversion.patch @@ -0,0 +1,36 @@ +diff -up bullet-2.77/Extras/glui/CMakeLists.txt.extras-version bullet-2.77/Extras/glui/CMakeLists.txt +--- bullet-2.77/Extras/glui/CMakeLists.txt.extras-version 2010-03-06 16:23:36.000000000 +0100 ++++ bullet-2.77/Extras/glui/CMakeLists.txt 2010-07-26 12:09:01.000000000 +0200 +@@ -61,6 +61,8 @@ arcball.cpp glui_button.cpp glui_fil + + ) + ++SET_TARGET_PROPERTIES(GLUI PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(GLUI PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(GLUI ${GLUT_glut_LIBRARY} ${OPENGL_gl_LIBRARY} ${OPENGL_glu_LIBRARY}) + ENDIF (BUILD_SHARED_LIBS) +diff -up bullet-2.77/Extras/Serialize/BulletFileLoader/CMakeLists.txt.extras-version bullet-2.77/Extras/Serialize/BulletFileLoader/CMakeLists.txt +--- bullet-2.77/Extras/Serialize/BulletFileLoader/CMakeLists.txt.extras-version 2010-07-26 12:10:36.000000000 +0200 ++++ bullet-2.77/Extras/Serialize/BulletFileLoader/CMakeLists.txt 2010-07-26 12:10:57.000000000 +0200 +@@ -16,6 +16,8 @@ btBulletFile.cpp + btBulletFile.h + ) + ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff -up bullet-2.77/Extras/Serialize/BulletWorldImporter/CMakeLists.txt.extras-version bullet-2.77/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +--- bullet-2.77/Extras/Serialize/BulletWorldImporter/CMakeLists.txt.extras-version 2010-07-26 12:11:08.000000000 +0200 ++++ bullet-2.77/Extras/Serialize/BulletWorldImporter/CMakeLists.txt 2010-07-26 12:11:26.000000000 +0200 +@@ -9,6 +9,8 @@ btBulletWorldImporter.cpp + btBulletWorldImporter.h + ) + ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletWorldImporter BulletDynamics BulletCollision BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) diff --git a/sci-physics/bullet/files/bullet-2.78-soversion.patch b/sci-physics/bullet/files/bullet-2.78-soversion.patch new file mode 100644 index 000000000000..b54ffa777ee3 --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.78-soversion.patch @@ -0,0 +1,44 @@ + Extras/Serialize/BulletFileLoader/CMakeLists.txt | 2 ++ + .../Serialize/BulletWorldImporter/CMakeLists.txt | 2 ++ + Extras/glui/CMakeLists.txt | 2 ++ + 3 files changed, 6 insertions(+), 0 deletions(-) + +diff --git a/Extras/Serialize/BulletFileLoader/CMakeLists.txt b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +index 486cfdc..f1e0884 100644 +--- a/Extras/Serialize/BulletFileLoader/CMakeLists.txt ++++ b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +@@ -16,6 +16,8 @@ btBulletFile.cpp + btBulletFile.h + ) + ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff --git a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +index e620315..e04e8e9 100644 +--- a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt ++++ b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +@@ -9,6 +9,8 @@ btBulletWorldImporter.cpp + btBulletWorldImporter.h + ) + ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletWorldImporter BulletDynamics BulletCollision BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff --git a/Extras/glui/CMakeLists.txt b/Extras/glui/CMakeLists.txt +index c2018a7..9a8d90f 100644 +--- a/Extras/glui/CMakeLists.txt ++++ b/Extras/glui/CMakeLists.txt +@@ -61,6 +61,8 @@ arcball.cpp glui_button.cpp glui_filebrowser.cpp glui_node.cpp glui_separ + + ) + ++SET_TARGET_PROPERTIES(GLUI PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(GLUI PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(GLUI ${GLUT_glut_LIBRARY} ${OPENGL_gl_LIBRARY} ${OPENGL_glu_LIBRARY}) + ENDIF (BUILD_SHARED_LIBS) diff --git a/sci-physics/bullet/metadata.xml b/sci-physics/bullet/metadata.xml new file mode 100644 index 000000000000..6c25c6b5e58a --- /dev/null +++ b/sci-physics/bullet/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + Bullet is a professional open source multi-threaded + 3D Collision Detection and Rigid Body Dynamics Library + for games and animation. +</longdescription> + <use> + <flag name="bullet3">Build Bullet 3</flag> + <flag name="double-precision">Build libraries in double precision</flag> + <flag name="extras">Build additional libraries</flag> + </use> + <upstream> + <remote-id type="google-code">bullet</remote-id> + <remote-id type="github">bulletphysics/bullet3</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/cernlib-montecarlo/Manifest b/sci-physics/cernlib-montecarlo/Manifest new file mode 100644 index 000000000000..d177b5c31a61 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/Manifest @@ -0,0 +1,3 @@ +DIST mclibs_20061220+dfsg3-1.debian.tar.gz 46362 SHA256 17a9f61860237b963bc4b6240296add2bbe45cf16ce994061c3f20c33994cf73 SHA512 ddb31fd218f0f051155548011415d9526e7866ec7caf7041a5f572d8064cb4f19c188724e839f445a47f490dacf0d67ef9ba871725756892e0ba1d569d575fe3 WHIRLPOOL c8db51ed7e1e78ffcdca96af3aeb388391473acc796b35af838fa60cb3129816e787dce325c8ac8be411d98ec2d1392959df97dd560ccae172c230ce2c342676 +DIST mclibs_20061220+dfsg3-3.debian.tar.gz 44763 SHA256 9796094d6b27a07a342c8f7572cae40b8717e13d04c8b1acb4b337901cb0c5af SHA512 2ef3c54026e86182200d4d7fce1889a2dd8c252743d0819e74679e2a5067794bea574530b59a7f08c394f8b75f7d31cac31f638fb72045700b379bd686a8f92f WHIRLPOOL 515ba362e11897c02cbbcecd25340ca7aba87c608b537103b38afe2fb65f0d1f7fcdd025d2fe4d835f488580608f53c1c606751996fe0e7fb55fb828c2d35997 +DIST mclibs_20061220+dfsg3.orig.tar.gz 7642494 SHA256 cb5ea19bc54a06c031c90192685748ce0f7df016bfae6b9d7d672d77a3444ce5 SHA512 add98b585648994ab616d040e9a3410b0eba13ab54a812674d3940bae0effed4446b02ce6a34887841c114bc444b1b83598e2c89c22b4df8dcd3fd4c1d8aaba3 WHIRLPOOL cee4c265ae610bbc1b2a48fdc6d769848bf936c78862a298725e5ac11fc2620a18b748dcd41e8b7622cf369c2a43f9641cc67e5f902a88e2f083f7b7587a1771 diff --git a/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild new file mode 100644 index 000000000000..f24179997a38 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild @@ -0,0 +1,89 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils fortran-2 toolchain-funcs + +DEB_PN=mclibs +DEB_PV=20061220+dfsg3 +DEB_PR=1 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="Monte-carlo library and tools for the cernlib" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +IUSE="+herwig" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + herwig? ( !sci-physics/herwig )" + +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + use herwig || epatch "${FILESDIR}"/${P}-noherwig.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + || die "sed for ldflags propagation failed" +} + +src_compile() { + export VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib \ + emake -j1 cernlib-test +} + +src_install() { + export VARTEXFONTS="${T}"/fonts + emake DESTDIR="${D}" MCDOC="${ED}usr/share/doc/${PF}" install + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild new file mode 100644 index 000000000000..47893126ffb8 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild @@ -0,0 +1,89 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils fortran-2 toolchain-funcs + +DEB_PN=mclibs +DEB_PV=20061220+dfsg3 +DEB_PR=3 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="Monte-carlo library and tools for the cernlib" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +IUSE="+herwig" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + herwig? ( !sci-physics/herwig )" + +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + use herwig || epatch "${FILESDIR}"/${P}-noherwig.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + || die "sed for ldflags propagation failed" +} + +src_compile() { + export VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + export VARTEXFONTS="${T}"/fonts + LD_LIBRARY_PATH="${S}"/shlib \ + emake -j1 cernlib-test +} + +src_install() { + emake DESTDIR="${D}" MCDOC="${ED}usr/share/doc/${PF}" install + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch b/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch new file mode 100644 index 000000000000..d0cb42d1ba42 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch @@ -0,0 +1,52 @@ +diff --git a/mclibs-2006.dfsg.2.orig/Makefile b/mclibs-2006.dfsg.2.orig/Makefile +index f3c89fd..780499e 100644 +--- a/mclibs-2006.dfsg.2.orig/Makefile ++++ b/mclibs-2006.dfsg.2.orig/Makefile +@@ -89,9 +89,6 @@ install-includes: + done ; \ + done + +- # install some symlinks, e.g. herwig$$version -> herwig +- rm -f $(DESTDIR)$(includedir)/herwig && \ +- ln -sf herwig59 $(DESTDIR)$(includedir)/herwig + rm -rf $(DESTDIR)$(includedir)/isajet758 + mv $(DESTDIR)$(includedir)/isajet $(DESTDIR)$(includedir)/isajet758 + ln -sf isajet758 $(DESTDIR)$(includedir)/isajet +@@ -128,14 +125,12 @@ install-arch: install-includes + fi + + # ... and mclibs documentation +- for dir in cojets eurodec herwig isajet pdflib ; do \ ++ for dir in cojets eurodec isajet pdflib ; do \ + install -d -m 0755 $(MCDOC)/$$dir ; \ + done + install -p -m 0644 $(CERN_DOCDIR)/cojets.txt $(MCDOC)/cojets/ + install -p -m 0644 $(CERN_DOCDIR)/isa* $(MCDOC)/isajet/ + install -p -m 0644 $(CERN_DOCDIR)/eurodec.txt $(MCDOC)/eurodec/ +- install -p -m 0644 $(CVSCOSRC)/mclibs/herwig/doc/herwig59 \ +- $(MCDOC)/herwig/herwig59.txt + install -p -m 0644 $(CVSCOSRC)/mclibs/pdf/dpdf/pdfdoc.doc \ + $(MCDOC)/pdflib/pdfdoc.txt + +diff --git a/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile b/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile +index 0c9867d..0f04f1b 100644 +--- a/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile ++++ b/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile +@@ -6,7 +6,7 @@ + to them and their dependents. They have already been purged from + Debianized source code. Also, re-order libs so that dependent ones + come after dependees. */ +-LIBDIRS= cojets eurodec pdf photos herwig isajet ++LIBDIRS= cojets eurodec pdf photos isajet + + SUBDIRS = $(LIBDIRS) + +@@ -16,7 +16,7 @@ InstallLibSubdirs($(LIBDIRS)) + InstallSharedLibSubdirs($(LIBDIRS)) + + /* Again, purge Pythia, Jetset and dependents. */ +-INCLUDEDIRS= cojets eurodec herwig isajet pdf ++INCLUDEDIRS= cojets eurodec isajet pdf + + InstallIncludeSubdirs($(INCLUDEDIRS)) + diff --git a/sci-physics/cernlib-montecarlo/metadata.xml b/sci-physics/cernlib-montecarlo/metadata.xml new file mode 100644 index 000000000000..3c0279be07c7 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + This metapackage provides various Monte Carlo libraries included in + Cernlib (both shared and static). Likely only physicists will be + interested in these packages. + The libraries of Ariadne, Fritiof, Jetset, Lepto, and Pythia are not + available for Gentoo: see cernlib Debian packaging for explanation. +</longdescription> + <use> + <flag name="herwig">Build Herwig internal event generator, newer version + available in <pkg>sci-physics/herwig</pkg></flag> + </use> +</pkgmetadata> diff --git a/sci-physics/cernlib/Manifest b/sci-physics/cernlib/Manifest new file mode 100644 index 000000000000..759b697cc84c --- /dev/null +++ b/sci-physics/cernlib/Manifest @@ -0,0 +1,3 @@ +DIST cernlib_20061220+dfsg3-2.debian.tar.gz 257093 SHA256 54d01b7c16015586b09d54940f8e4389eb9f9a85e93be8058a2f1349a009029a SHA512 43a2ca55d42b92bfb551b029c75728e80b4c83473397b52f746d9481c7503762bc5a281732908bfeb29a64f728fed4c127ed1cb9101c16e4fb2dd28c452730ea WHIRLPOOL e11e127c2ef22c96a8f309a1828b076064b87419d7b2fa2f0e93f254582ded6ce41ca678c757921e9a732f75a4bd0392cd4edb7c0752ce04986fe8c1ee210c46 +DIST cernlib_20061220+dfsg3-4.1.debian.tar.xz 170100 SHA256 6f19d776b0a6f22ac688c4e5db9d0ad35f99d8ae1906422f02cca92353d4f9d6 SHA512 d259ab304b040c6bab8535c0db60aaa466ef7bb9bbcce9b2d8931505a180c92935d428e0dd45bfa6199ec939f67580a6d3ac1035c0384bdcf9e6601a351ce90a WHIRLPOOL bf1da58ace8294ff6df710dad8c333122f005437819b8923d53f5fe680f1798f7d22cd917138b679b92363e399759a5b44aa4902b788aa6666f38da7738a3857 +DIST cernlib_20061220+dfsg3.orig.tar.gz 6434476 SHA256 767ecf344cb00a7b2ec232a61c67645ce0fe1a6af861e60a9aa2f96544470f1b SHA512 11fade45c5ae69c858f37a82e74ab1a69416314a23c12ec5205ee6b918590d66f26d3ae68afa466ae3109d736212968ece956a444270ddd189a27a24c0ccece8 WHIRLPOOL fce13048cff43b6abc7e52e9729f5e484ebf85b53f09e6bfbf8acd970ea13b160de6d6d9593779b6b485dfb9843dec4d2d58bac0df20dfce9809a3560eec079c diff --git a/sci-physics/cernlib/cernlib-2006-r5.ebuild b/sci-physics/cernlib/cernlib-2006-r5.ebuild new file mode 100644 index 000000000000..bfbba5cefdf7 --- /dev/null +++ b/sci-physics/cernlib/cernlib-2006-r5.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils fortran-2 multilib toolchain-funcs + +DEB_PN=cernlib +DEB_PV=20061220+dfsg3 +DEB_PR=2 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN program library for High Energy Physics" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="amd64 hppa sparc x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + x11-libs/motif:0 + virtual/lapack + dev-lang/cfortran" +DEPEND="${RDEPEND} + x11-misc/imake + x11-misc/makedepend + virtual/pkgconfig" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}" + +src_prepare() { + mv ../debian . || die + epatch "${FILESDIR}"/${P}-nogfortran.patch + # set some default paths + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e "s:prefix)/lib:prefix)/$(get_libdir):" \ + -e "s:\$(prefix)/etc:${EROOT}/etc:" \ + -e 's:$(prefix)/man:$(prefix)/share/man:' \ + debian/add-ons/cernlib.mk || die "sed failed" + + # use system blas and lapack set by gentoo framework + sed -i \ + -e "s:\$DEPS -lm:$($(tc-getPKG_CONFIG) --libs blas):" \ + -e "s:\$DEPS -llapack -lm:$($(tc-getPKG_CONFIG) --libs lapack):" \ + -e 's:`depend $d $a blas`::' \ + -e 's:X11R6:X11:g' \ + debian/add-ons/bin/cernlib.in || die "sed failed" + + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + einfo "Applying Debian patches" + emake -j1 patch + + epatch "${FILESDIR}"/${P}-fgets.patch + epatch "${FILESDIR}"/${P}-ypatchy-short-name.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + src/patchy/Imakefile \ + || die "sed for ldflags propagation failed" + + # add missing headers for implicit + sed -i \ + -e '0,/^#include/i#include <stdlib.h>' \ + src/kernlib/kerngen/ccgen*/*.c || die +} + +src_compile() { + # parallel make breaks and complex patched imake system, hard to debug + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib/cernlib-2006-r6.ebuild b/sci-physics/cernlib/cernlib-2006-r6.ebuild new file mode 100644 index 000000000000..f3c6efe14342 --- /dev/null +++ b/sci-physics/cernlib/cernlib-2006-r6.ebuild @@ -0,0 +1,107 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils fortran-2 multilib toolchain-funcs + +DEB_PN=cernlib +DEB_PV=20061220+dfsg3 +DEB_PR=4.1 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN program library for High Energy Physics" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.xz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~hppa ~sparc ~x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + virtual/lapack + dev-lang/cfortran" +DEPEND="${RDEPEND} + x11-misc/imake + x11-misc/makedepend + virtual/pkgconfig" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}" + +src_prepare() { + mv ../debian . || die + epatch "${FILESDIR}"/${P}-nogfortran.patch + # set some default paths + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e "s:prefix)/lib/\$(DEB_HOST_MULTIARCH):prefix)/$(get_libdir):" \ + -e "s:\$(prefix)/etc:${EROOT}/etc:" \ + -e 's:$(prefix)/man:$(prefix)/share/man:' \ + debian/add-ons/cernlib.mk || die "sed failed" + + # use system blas and lapack set by gentoo framework + sed -i \ + -e "s:\$DEPS -lm:$($(tc-getPKG_CONFIG) --libs blas):" \ + -e "s:\$DEPS -llapack -lm:$($(tc-getPKG_CONFIG) --libs lapack):" \ + -e 's:`depend $d $a blas`::' \ + -e 's:X11R6:X11:g' \ + debian/add-ons/bin/cernlib.in || die "sed failed" + + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + einfo "Applying Debian patches" + emake -j1 patch + + epatch "${FILESDIR}"/${P}-fgets.patch + epatch "${FILESDIR}"/${P}-ypatchy-short-name.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + src/patchy/Imakefile \ + || die "sed for ldflags propagation failed" + + # add missing headers for implicit + sed -i \ + -e '0,/^#include/i#include <stdlib.h>' \ + src/kernlib/kerngen/ccgen*/*.c || die +} + +src_compile() { + # parallel make breaks and complex patched imake system, hard to debug + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib/files/cernlib-2006-fgets.patch b/sci-physics/cernlib/files/cernlib-2006-fgets.patch new file mode 100644 index 000000000000..e42eaf833b35 --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-fgets.patch @@ -0,0 +1,20 @@ +--- src/packlib/cspack/tcpaw/tcpaw.c.old 2011-01-30 21:18:35.326089059 +0000 ++++ src/packlib/cspack/tcpaw/tcpaw.c 2011-01-30 21:18:01.876081979 +0000 +@@ -984,7 +984,7 @@ + int s, addrlen; + int sx, nn = 0; /* REXEC */ + #ifndef IBM +- char get[50], *getp = get; /* REXEC */ ++ char get[80], *getp = get; /* REXEC */ + #endif /*^IBM */ + char sys[30]; + register int i, j, k; +@@ -1036,7 +1036,7 @@ + char buff[100]; + char *get; + char *getp; +- char getbuf[50]; /* REXEC */ ++ char getbuf[80]; /* REXEC */ + getp = getbuf; /* REXEC */ + get = getbuf; /* REXEC */ + /* j = 80; */ /* (crude kludge) length of srvc in Fortran */ diff --git a/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch b/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch new file mode 100644 index 000000000000..63883274403f --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch @@ -0,0 +1,56 @@ +--- debian/add-ons/Makefile.orig 2008-03-15 16:46:46.000000000 +0000 ++++ debian/add-ons/Makefile 2008-03-15 16:47:51.000000000 +0000 +@@ -28,6 +28,9 @@ + ifneq (,$(findstring ifort,$(DEB_BUILD_OPTIONS))) + sed -i -e 's/-lgfortran/-limf/' $(CERN_BINDIR)/cernlib + endif ++ifneq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ sed -i -e 's/-lgfortran/-lg2c/' $(CERN_BINDIR)/cernlib ++endif + chmod a+x $(CERN_BINDIR)/cernlib + + # target to install include files for development packages +--- debian/add-ons/cernlib.mk.orig 2008-03-15 16:48:05.000000000 +0000 ++++ debian/add-ons/cernlib.mk 2008-03-15 17:09:14.000000000 +0000 +@@ -35,6 +35,10 @@ + export TOOL_SONAME = _gfortran + export TOOL_NAME = _gfortran + endif ++ifeq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ export TOOL_SONAME = _gfortran ++ export TOOL_NAME = _gfortran ++endif + export PATH := $(CERN_BINDIR):$(ADDONDIR)/bin:$(datadir)/cernlib:${PATH} + export INSTALL_OPTS ?= -s + export CC ?= gcc +@@ -118,6 +122,8 @@ + endif + ifneq (,$(findstring ifort,$(DEB_BUILD_OPTIONS))) + echo '#define HasIntelifc YES' >> $(CVSCOSRC)/config/host.def ++else ifneq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ echo >> $(CVSCOSRC)/config/host.def + else + echo '#define Hasgfortran YES' >> $(CVSCOSRC)/config/host.def + endif +--- debian/patches/320-support-ifort.dpatch.orig 2008-03-15 17:31:34.000000000 +0000 ++++ debian/patches/320-support-ifort.dpatch 2008-03-15 17:31:56.000000000 +0000 +@@ -27,7 +27,7 @@ + #if defined(CERNLIB_UNIX) + CLIBS= -G Motif kernlib + +# if defined(CERNLIB_INTELIFC) +-+CLIBS= $(CLIBS) -nofor_main +++CLIBS:= $(CLIBS) -nofor_main + +# endif + #endif + +--- debian/patches/803-link-binaries-dynamically.dpatch.orig 2008-03-15 17:48:38.000000000 +0000 ++++ debian/patches/803-link-binaries-dynamically.dpatch 2008-03-15 17:49:17.000000000 +0000 +@@ -64,7 +64,7 @@ + -CLIBS= -G Motif kernlib + +CLIBS= -G Motif -u Xm + # if defined(CERNLIB_INTELIFC) +- CLIBS= $(CLIBS) -nofor_main ++ CLIBS:= $(CLIBS) -nofor_main + # endif + #endif + diff --git a/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch b/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch new file mode 100644 index 000000000000..706ab3671672 --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch @@ -0,0 +1,11 @@ +--- src/patchy/Imakefile.orig 2013-01-16 13:45:07.161828513 -0800 ++++ src/patchy/Imakefile 2013-01-16 13:45:34.768966597 -0800 +@@ -77,7 +77,7 @@ + @ ln -s $< $@ + + %.f: $(LDIR)%.cra $(LDIR)patchy.car +- ypatchy - :$@ :$< TTY .go ++ ypatchy - :$@ :$(shell basename $<) TTY .go + + .f.o: + $(FC) -c $(FORTRANOPTIONS) $(FDEBUGFLAGS) $< diff --git a/sci-physics/cernlib/metadata.xml b/sci-physics/cernlib/metadata.xml new file mode 100644 index 000000000000..9db83d0ca7a4 --- /dev/null +++ b/sci-physics/cernlib/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + The CERN Program Library is a large collection of general purpose + libraries and modules maintained and offered in both source and + object code form on the CERN central computers. Most of these + programs were developed at CERN and are therefore oriented towards + the needs of a physics research laboratory that is general + mathematics, data analysis, detectors simulation, data-handling + etc... applicable to a wide range of problems. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/clhep/Manifest b/sci-physics/clhep/Manifest new file mode 100644 index 000000000000..213e2b411ac4 --- /dev/null +++ b/sci-physics/clhep/Manifest @@ -0,0 +1,8 @@ +DIST clhep-2.0.4.6.tgz 3593699 SHA256 a75e9d5b08cec7456e580834fb0894043054ee66336c2ce4c33622ca2500ee55 +DIST clhep-2.1.0.1.tgz 4243520 SHA256 b8492c1c795e899d8ab2462fc4f40f05a520dba17e598ca2434623e24f51cd29 SHA512 fa6d69239c539992371e053a17c4cb83a2283f87a16ec8249c99a415ab0730a74c59c2386091b5efd040a429075e7a6acd855dfc9c6a68e60f5eb6dcada6327a WHIRLPOOL aa019105093175b197aa4ca9841736d9ad3586a6251e41dede0950e4107b533680293fd8038a239e415bb55d251238a0157803fbb12b05eaa898367252bd9096 +DIST clhep-2.1.2.4.tgz 1845804 SHA256 ca1b39772c4fb75047c001a892019e65be4ac61ccd9f059bd2ff273c88b5c2cf SHA512 5386c41e33e780a3096f8cea47700b8e89246b4450d6ba135bafecde8af6d7315c681f2eee7569afd837cfaacd2c35f104bf5b077f5a4e23faaeaee9fdca7363 WHIRLPOOL 1c26d5ac15fecfdf6302a69ac547b732c65cda3e34d43c90c8a7a0327073bebed24a34ccc6ff0c3bc673733d5ba2368004016a65da46b5cedbf23ce7b3585526 +DIST clhep-2.1.3.1.tgz 1860936 SHA256 5d3e45b39a861731fe3a532bb1426353bf62b54c7b90ecf268827e50f925642b SHA512 d5bd1c459b1a89e53e8768d7b00c1b854172419d1f8a1218f80265c6c995235850cceec6120daaf80067a7717845982ffcbd35944f81fa2f0542e842941d6807 WHIRLPOOL 716a2289c55f727c1c9ba3294abdd592624953fcb57a0235519fa3620dc121a9cc57ab3c5c7cea0849a1bbd10f5f8dd63a2b5aa7b0f5e2c8c889f7aa0c27a013 +DIST clhep-2.1.4.1.tgz 1866250 SHA256 adeb7ad87b810f772b609e77eacc60fd3e1f949e694a434705e6759cdac41fe4 SHA512 ff5eb76ddf740635c17f01c62679ae7c22c152f96684315f059744ab67e420e51ba9c1ae0ac745b2890d1ddb6a678999b61d44c36e358c1d95c6b57362f3fae0 WHIRLPOOL da4fd1087b0c92f5a6f8bec060b4e6eee0091327defb9e2d71721c09b8c1f773d3ed377567a378dbb48156426ecfdb638049e10122fc5b2bcf2a7fe560e1ebd0 +DIST clhep-2.1.4.2.tgz 1838675 SHA256 ffd72997fb921fa7ef770c40c6bb12f603aa4761e642dc577160d1ee2aa695f0 SHA512 8caa6fdbf1d7dbfe217cc5aef384e21b99ae386a76771f17b3dc583c0c55e21164ad3778005798f1a4d151b79782b96a3495d88f1cf7bd46da4c6550ebd69f7c WHIRLPOOL 33ed24301927680c858561e6c6105fddbe72e725bdae26bdefaa24fc2ac9ee93db7a48fcb5e2b773a03acc9a41a2d294e1071ab7ad45bb4c1cec4180cd4da699 +DIST clhep-2.2.0.1.tgz 1844675 SHA256 1006284b195e569276ba9d6e3e2b0b2d002e098c10ac09157b26ec076987d7d7 SHA512 930577d18f1c4a9dc94b259589653ebecf7b85ec78da7e1dc7b49d282dbae210bcf257831254f875840a3fd6bf5fc4ad7c4e46825e31674c55c746ef7c2939f2 WHIRLPOOL ad9e765c2adb47de9688abc5c8f7f6e481160df66c811e381d136fcf7d1e7726402367ad2a3f757cefc754c8fe6dc225bdee0f15f763cecc91a3413b63cbc54c +DIST clhep-2.2.0.5.tgz 1847046 SHA256 92e8b5d32ae96154edd27d0c641ba048ad33cb69dd4f1cfb72fc578770a34818 SHA512 07d9359604196344fe3b13cc103727693fd70818c22849e54507530221812843a943cb8ed66eea421e498edcc9c0f584826823ea7939cbf53b90b17d412aed1a WHIRLPOOL 4d5b7429e4b0498393c8f664045df4ba27a073a7e926ee9a5f9e196e5d0d3dd4da2cb4bf77e8eb37e6651c3e1f3f9742167414010ae5606e02f307ab6efe82c4 diff --git a/sci-physics/clhep/clhep-2.0.4.6.ebuild b/sci-physics/clhep/clhep-2.0.4.6.ebuild new file mode 100644 index 000000000000..4724aa529428 --- /dev/null +++ b/sci-physics/clhep/clhep-2.0.4.6.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 +inherit autotools eutils + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="public-domain" +SLOT="2" +KEYWORDS="amd64 hppa ppc x86" + +IUSE="exceptions" +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + for d in $(find . -name configure.in); do + # respect user flags and fix some compilers stuff + sed -i \ + -e 's:^g++):*g++):g' \ + -e 's:^icc):icc|icpc):g' \ + -e '/AM_CXXFLAGS=/s:-O ::g' \ + ${d} || die + # need to rebuild because original configurations + # have buggy detection + done + for d in $(find . -name Makefile.am | xargs grep -l ": %\.cc"); do + sed -i \ + -e 's|: %\.cc|: %\.cc \$(shareddir)|' \ + -e 's|all-local: \$(shareddir)|all-local: |' \ + ${d} || die + # fixing parallel build + done + eautoreconf +} + +src_configure() { + econf $(use_enable exceptions) +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" + dodoc README ChangeLog || die +} diff --git a/sci-physics/clhep/clhep-2.1.0.1.ebuild b/sci-physics/clhep/clhep-2.1.0.1.ebuild new file mode 100644 index 000000000000..83bd826f1c2e --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.0.1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 + +WANT_AUTOMAKE=1.9 +inherit autotools eutils + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="public-domain" +SLOT="2" +KEYWORDS="amd64 hppa ppc x86" + +IUSE="exceptions static-libs" +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + for d in $(find . -name configure.ac); do + # respect user flags and fix some compilers stuff + sed -i \ + -e 's:^g++):*g++):g' \ + -e 's:^icc):icc|icpc):g' \ + -e '/AM_CXXFLAGS=/s:-O ::g' \ + ${d} || die + # need to rebuild because original configurations + # have buggy detection + done + for d in $(find . -name Makefile.am | xargs grep -l ": %\.cc"); do + sed -i \ + -e 's|: %\.cc|: %\.cc \$(shareddir)|' \ + -e 's|all-local: \$(shareddir)|all-local: |' \ + ${d} || die + # fixing parallel build + done + eautoreconf +} + +src_configure() { + econf \ + $(use_enable exceptions) \ + $(use_enable static-libs static) +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" + dodoc README ChangeLog || die +} diff --git a/sci-physics/clhep/clhep-2.1.2.4.ebuild b/sci-physics/clhep/clhep-2.1.2.4.ebuild new file mode 100644 index 000000000000..5b78839aeb8e --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.2.4.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + epatch "${FILESDIR}"/${P}-libdir.patch + epatch "${FILESDIR}"/${P}-lsb-whitespace.patch + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a + dodoc README ChangeLog +} diff --git a/sci-physics/clhep/clhep-2.1.3.1.ebuild b/sci-physics/clhep/clhep-2.1.3.1.ebuild new file mode 100644 index 000000000000..cf3f1c5a4471 --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.3.1.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a + dodoc README ChangeLog +} diff --git a/sci-physics/clhep/clhep-2.1.4.1.ebuild b/sci-physics/clhep/clhep-2.1.4.1.ebuild new file mode 100644 index 000000000000..31d17662ee78 --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.4.1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.1.4.2.ebuild b/sci-physics/clhep/clhep-2.1.4.2.ebuild new file mode 100644 index 000000000000..c0014cfaee1e --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.4.2.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.2.0.1.ebuild b/sci-physics/clhep/clhep-2.2.0.1.ebuild new file mode 100644 index 000000000000..c0014cfaee1e --- /dev/null +++ b/sci-physics/clhep/clhep-2.2.0.1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.2.0.5.ebuild b/sci-physics/clhep/clhep-2.2.0.5.ebuild new file mode 100644 index 000000000000..e36e813461b5 --- /dev/null +++ b/sci-physics/clhep/clhep-2.2.0.5.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/files/clhep-2.1.2.3-libdir.patch b/sci-physics/clhep/files/clhep-2.1.2.3-libdir.patch new file mode 100644 index 000000000000..69e6c24451bb --- /dev/null +++ b/sci-physics/clhep/files/clhep-2.1.2.3-libdir.patch @@ -0,0 +1,93 @@ +diff -Nur 2.1.2.3/CLHEP.orig/cmake/Modules/ClhepBuildLibrary.cmake 2.1.2.3/CLHEP/cmake/Modules/ClhepBuildLibrary.cmake +--- 2.1.2.3/CLHEP.orig/cmake/Modules/ClhepBuildLibrary.cmake 2012-06-27 20:47:44.000000000 +0100 ++++ 2.1.2.3/CLHEP/cmake/Modules/ClhepBuildLibrary.cmake 2012-06-27 23:49:13.000000000 +0100 +@@ -47,8 +47,8 @@ + # Install the libraries + INSTALL (TARGETS ${package} ${package}S + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX} + ) + endmacro(clhep_build_library) + +@@ -78,22 +78,22 @@ + INSTALL(TARGETS CLHEP CLHEPS + EXPORT CLHEPLibraryDepends + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX} + ) + + if( ${CMAKE_SYSTEM_NAME} MATCHES "Windows" ) + # copy + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_static_symlink +- "exec_program(${CMAKE_COMMAND} ARGS -E chdir ${CMAKE_INSTALL_PREFIX}/lib; ${CMAKE_COMMAND} ARGS -E copy ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} )" ) ++ "exec_program(${CMAKE_COMMAND} ARGS -E chdir $ENV{CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}; ${CMAKE_COMMAND} ARGS -E copy ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} )" ) + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_shared_symlink +- "exec_program(${CMAKE_COMMAND} ARGS -E chdir ${CMAKE_INSTALL_PREFIX}/bin; ${CMAKE_COMMAND} ARGS -E copy ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} )" ) ++ "exec_program(${CMAKE_COMMAND} ARGS -E chdir $ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin; ${CMAKE_COMMAND} ARGS -E copy ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} )" ) + else() + # create the symbolic links + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_static_symlink +- "exec_program(${CMAKE_COMMAND} ARGS -E chdir ${CMAKE_INSTALL_PREFIX}/lib; ${CMAKE_COMMAND} ARGS -E create_symlink ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} )" ) ++ "exec_program(${CMAKE_COMMAND} ARGS -E chdir $ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}; ${CMAKE_COMMAND} ARGS -E create_symlink ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} )" ) + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_shared_symlink +- "exec_program(${CMAKE_COMMAND} ARGS -E chdir ${CMAKE_INSTALL_PREFIX}/lib; ${CMAKE_COMMAND} ARGS -E create_symlink ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} )" ) ++ "exec_program(${CMAKE_COMMAND} ARGS -E chdir $ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}; ${CMAKE_COMMAND} ARGS -E create_symlink ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} )" ) + endif() + + INSTALL(SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/clhep_static_symlink ) +diff -Nur 2.1.2.3/CLHEP.orig/cmake/Modules/ClhepToolchain.cmake 2.1.2.3/CLHEP/cmake/Modules/ClhepToolchain.cmake +--- 2.1.2.3/CLHEP.orig/cmake/Modules/ClhepToolchain.cmake 2012-06-27 20:47:44.000000000 +0100 ++++ 2.1.2.3/CLHEP/cmake/Modules/ClhepToolchain.cmake 2012-06-27 23:39:28.000000000 +0100 +@@ -63,7 +63,7 @@ + # + set(CLHEP_PKGCONFIG_PREFIX ${PROJECT_BINARY_DIR}) + set(CLHEP_PKGCONFIG_INCLUDEDIR ${CLHEP_INCLUDE_DIR}) +-set(CLHEP_PKGCONFIG_LIBDIR ${PROJECT_BINARY_DIR}/lib) ++set(CLHEP_PKGCONFIG_LIBDIR ${PROJECT_BINARY_DIR}/lib${LIB_SUFFIX}) + + configure_file(${PROJECT_SOURCE_DIR}/cmake/Templates/clhep.pc.in + ${PROJECT_BINARY_DIR}/clhep.pc +@@ -84,7 +84,7 @@ + # We use a relative path from the directory where the CLHEPConfig.cmake + # file is installed to the actual include dir. + file(RELATIVE_PATH _relincpath +- ${CMAKE_INSTALL_PREFIX}/lib/CLHEP-${VERSION} ++ ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}/CLHEP-${VERSION} + ${CMAKE_INSTALL_PREFIX}/include + ) + set(CLHEP_INCLUDE_DIR "\${_thisdir}/${_relincpath}") +@@ -111,7 +111,7 @@ + # If you later use GNUInstallDirs.cmake, this would need more work to + # ensure accurate calculation of the relative path. + set(CLHEP_PKGCONFIG_PREFIX "\${pcfiledir}/../..") +-set(CLHEP_PKGCONFIG_LIBDIR "\${prefix}/lib") ++set(CLHEP_PKGCONFIG_LIBDIR "\${prefix}/lib${LIB_SUFFIX}") + set(CLHEP_PKGCONFIG_INCLUDEDIR "\${prefix}/include") + + configure_file(${PROJECT_SOURCE_DIR}/cmake/Templates/clhep.pc.in +@@ -129,16 +129,16 @@ + install(FILES + ${PROJECT_BINARY_DIR}/InstallTreeFiles/CLHEPConfigVersion.cmake + ${PROJECT_BINARY_DIR}/InstallTreeFiles/CLHEPConfig.cmake +- DESTINATION lib/CLHEP-${VERSION} ++ DESTINATION lib${LIB_SUFFIX}/CLHEP-${VERSION} + ) + +-install(EXPORT CLHEPLibraryDepends DESTINATION lib/CLHEP-${VERSION}) ++install(EXPORT CLHEPLibraryDepends DESTINATION lib${LIB_SUFFIX}/CLHEP-${VERSION}) + + # Install the pkg-config file. The choice of 'lib/pkgconfig' for the + # installation seems fairly standard. + install(FILES + ${PROJECT_BINARY_DIR}/InstallTreeFiles/clhep.pc +- DESTINATION lib/pkgconfig ++ DESTINATION lib${LIB_SUFFIX}/pkgconfig + ) + + # - And we should be done... diff --git a/sci-physics/clhep/files/clhep-2.1.2.4-libdir.patch b/sci-physics/clhep/files/clhep-2.1.2.4-libdir.patch new file mode 100644 index 000000000000..fbdbb6110a6b --- /dev/null +++ b/sci-physics/clhep/files/clhep-2.1.2.4-libdir.patch @@ -0,0 +1,87 @@ +diff -Nur CLHEP.orig/cmake/Modules/ClhepBuildLibrary.cmake CLHEP/cmake/Modules/ClhepBuildLibrary.cmake +--- CLHEP.orig/cmake/Modules/ClhepBuildLibrary.cmake 2012-07-09 19:33:59.000000000 +0100 ++++ CLHEP/cmake/Modules/ClhepBuildLibrary.cmake 2012-08-07 18:44:55.000000000 +0100 +@@ -47,8 +47,8 @@ + # Install the libraries + INSTALL (TARGETS ${package} ${package}S + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX} + ) + endmacro(clhep_build_library) + +@@ -78,8 +78,8 @@ + INSTALL(TARGETS CLHEP CLHEPS + EXPORT CLHEPLibraryDepends + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX} + ) + + if( ${CMAKE_SYSTEM_NAME} MATCHES "Windows" ) +@@ -91,9 +91,9 @@ + else() + # create the symbolic links + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_static_symlink +- "execute_process(COMMAND \"${CMAKE_COMMAND}\" -E create_symlink ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} WORKING_DIRECTORY \"${CMAKE_INSTALL_PREFIX}/lib\" )" ) ++ "execute_process(COMMAND \"${CMAKE_COMMAND}\" -E create_symlink ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_STATIC_LIBRARY_SUFFIX} ${CMAKE_STATIC_LIBRARY_PREFIX}CLHEP${CMAKE_STATIC_LIBRARY_SUFFIX} WORKING_DIRECTORY \"$ENV{DESTDIR}S{CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}\" )" ) + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/clhep_shared_symlink +- "execute_process(COMMAND \"${CMAKE_COMMAND}\" -E create_symlink ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} WORKING_DIRECTORY \"${CMAKE_INSTALL_PREFIX}/lib\" )" ) ++ "execute_process(COMMAND \"${CMAKE_COMMAND}\" -E create_symlink ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP-${VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX} ${CMAKE_SHARED_LIBRARY_PREFIX}CLHEP${CMAKE_SHARED_LIBRARY_SUFFIX} WORKING_DIRECTORY \"$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}\" )" ) + endif() + + INSTALL(SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/clhep_static_symlink ) +diff -Nur CLHEP.orig/cmake/Modules/ClhepToolchain.cmake CLHEP/cmake/Modules/ClhepToolchain.cmake +--- CLHEP.orig/cmake/Modules/ClhepToolchain.cmake 2011-12-16 00:07:27.000000000 +0000 ++++ CLHEP/cmake/Modules/ClhepToolchain.cmake 2012-08-07 17:48:57.000000000 +0100 +@@ -63,7 +63,7 @@ + # + set(CLHEP_PKGCONFIG_PREFIX ${PROJECT_BINARY_DIR}) + set(CLHEP_PKGCONFIG_INCLUDEDIR ${CLHEP_INCLUDE_DIR}) +-set(CLHEP_PKGCONFIG_LIBDIR ${PROJECT_BINARY_DIR}/lib) ++set(CLHEP_PKGCONFIG_LIBDIR ${PROJECT_BINARY_DIR}/lib${LIB_SUFFIX}) + + configure_file(${PROJECT_SOURCE_DIR}/cmake/Templates/clhep.pc.in + ${PROJECT_BINARY_DIR}/clhep.pc +@@ -84,7 +84,7 @@ + # We use a relative path from the directory where the CLHEPConfig.cmake + # file is installed to the actual include dir. + file(RELATIVE_PATH _relincpath +- ${CMAKE_INSTALL_PREFIX}/lib/CLHEP-${VERSION} ++ ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}/CLHEP-${VERSION} + ${CMAKE_INSTALL_PREFIX}/include + ) + set(CLHEP_INCLUDE_DIR "\${_thisdir}/${_relincpath}") +@@ -111,7 +111,7 @@ + # If you later use GNUInstallDirs.cmake, this would need more work to + # ensure accurate calculation of the relative path. + set(CLHEP_PKGCONFIG_PREFIX "\${pcfiledir}/../..") +-set(CLHEP_PKGCONFIG_LIBDIR "\${prefix}/lib") ++set(CLHEP_PKGCONFIG_LIBDIR "\${prefix}/lib${LIB_SUFFIX}") + set(CLHEP_PKGCONFIG_INCLUDEDIR "\${prefix}/include") + + configure_file(${PROJECT_SOURCE_DIR}/cmake/Templates/clhep.pc.in +@@ -129,16 +129,16 @@ + install(FILES + ${PROJECT_BINARY_DIR}/InstallTreeFiles/CLHEPConfigVersion.cmake + ${PROJECT_BINARY_DIR}/InstallTreeFiles/CLHEPConfig.cmake +- DESTINATION lib/CLHEP-${VERSION} ++ DESTINATION lib${LIB_SUFFIX}/CLHEP-${VERSION} + ) + +-install(EXPORT CLHEPLibraryDepends DESTINATION lib/CLHEP-${VERSION}) ++install(EXPORT CLHEPLibraryDepends DESTINATION lib${LIB_SUFFIX}/CLHEP-${VERSION}) + + # Install the pkg-config file. The choice of 'lib/pkgconfig' for the + # installation seems fairly standard. + install(FILES + ${PROJECT_BINARY_DIR}/InstallTreeFiles/clhep.pc +- DESTINATION lib/pkgconfig ++ DESTINATION lib${LIB_SUFFIX}/pkgconfig + ) + + # - And we should be done... diff --git a/sci-physics/clhep/files/clhep-2.1.2.4-lsb-whitespace.patch b/sci-physics/clhep/files/clhep-2.1.2.4-lsb-whitespace.patch new file mode 100644 index 000000000000..9880dd88806a --- /dev/null +++ b/sci-physics/clhep/files/clhep-2.1.2.4-lsb-whitespace.patch @@ -0,0 +1,32 @@ +diff -Nur cmake/Modules.orig/ClhepPackageCompiler.cmake cmake/Modules/ClhepPackageCompiler.cmake +--- cmake/Modules.orig/ClhepPackageCompiler.cmake 2012-08-14 13:07:41.891381108 -0700 ++++ cmake/Modules/ClhepPackageCompiler.cmake 2012-08-14 13:08:39.826695769 -0700 +@@ -16,6 +16,7 @@ + execute_process(COMMAND ${CMAKE_CXX_COMPILER} + ${CMAKE_CXX_COMPILER_ARG1} -dumpversion + OUTPUT_VARIABLE _my_COMPILER_VERSION ++ OUTPUT_STRIP_TRAILING_WHITESPACE + ) + set( COMPILER_VERSION ${_my_COMPILER_VERSION} PARENT_SCOPE) + STRING(REGEX REPLACE "([0-9])\\.([0-9])(\\.[0-9])?" "\\1\\2" +diff -Nur cmake/Modules.orig/ClhepPackaging.cmake cmake/Modules/ClhepPackaging.cmake +--- cmake/Modules.orig/ClhepPackaging.cmake 2012-08-14 13:07:41.890381099 -0700 ++++ cmake/Modules/ClhepPackaging.cmake 2012-08-14 13:08:17.025571936 -0700 +@@ -68,7 +68,7 @@ + # We have linux, so incorporate Vendor info into package name + # - Distributor ID + ##exec_program(${LSB_RELEASE_PROGRAM} ARGS -s -i OUTPUT_VARIABLE LSB_VENDOR) +- execute_process(COMMAND ${LSB_RELEASE_PROGRAM} -s -i OUTPUT_VARIABLE LSB_VENDOR) ++ execute_process(COMMAND ${LSB_RELEASE_PROGRAM} -s -i OUTPUT_VARIABLE LSB_VENDOR OUTPUT_STRIP_TRAILING_WHITESPACE) + string(REGEX REPLACE " " "-" LSB_VENDOR ${LSB_VENDOR}) + string(TOLOWER ${LSB_VENDOR} LSB_VENDOR) + if("${LSB_VENDOR}" MATCHES "scientificslf") +@@ -85,7 +85,7 @@ + + # - Distributor release + ##exec_program(${LSB_RELEASE_PROGRAM} ARGS -s -r OUTPUT_VARIABLE LSB_RELEASE) +- execute_process(COMMAND ${LSB_RELEASE_PROGRAM} -s -r OUTPUT_VARIABLE LSB_RELEASE) ++ execute_process(COMMAND ${LSB_RELEASE_PROGRAM} -s -r OUTPUT_VARIABLE LSB_RELEASE OUTPUT_STRIP_TRAILING_WHITESPACE) + string(TOLOWER ${LSB_RELEASE} LSB_RELEASE) + string(REGEX REPLACE "([0-9])\\.([0-9])?" "\\1" LSB_RELEASE ${LSB_RELEASE}) + diff --git a/sci-physics/clhep/metadata.xml b/sci-physics/clhep/metadata.xml new file mode 100644 index 000000000000..cc9e48460d31 --- /dev/null +++ b/sci-physics/clhep/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + A Class Library for High Energy Physics is intended to be a set of + HEP-specific foundation and utility classes such as random + generators, physics vectors, geometry and linear algebra. +</longdescription> +<use> + <flag name="exceptions">Enable zoom exceptions for user intervention</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/espresso++/Manifest b/sci-physics/espresso++/Manifest new file mode 100644 index 000000000000..36c233b8d526 --- /dev/null +++ b/sci-physics/espresso++/Manifest @@ -0,0 +1,2 @@ +DIST espresso++-1.9.2.tar.bz2 14696734 SHA256 7bdcf502661809dc39a18b3f7fa0b0799adbf801ddb6681a197ab1bd9c7915b0 SHA512 2fffd30c24e12c079e5d3c9c98464db7add21b67e848104dc6f3952635595e4108a4d27dd5a852775cb0515e58be7a302602b34fb51dd67dff8f8677d2abb1fc WHIRLPOOL 0fe4ea6f452dd93861a3e04469b5ee8b37c55ccf4523e6ae575b99b3223f861e8e78675a3ef74ba5a3cfe3c9a039453f1eadea4fc99e339db54ac1e1304493b7 +DIST espresso++-1.9.3.tar.bz2 14714575 SHA256 602541c9e5889aeff30462f252fa5f2af7d818808ce946d11ee33500f4f2c959 SHA512 0ac90c6b09da0e7503e83cff8180373249760206fc0035b72868376abbd4a0d9121e7c92ae286493230af2080221464fc0f9428ed78101bde32eb926f07bb010 WHIRLPOOL f9fb22f4d113a47eee1d9203d4dabf5f5cef3347d7c17583459a69a6bee7392675a0f5ebab09315c4a740dba2fb412c13f3cb74ba3e8d0c99f51f62452af28e8 diff --git a/sci-physics/espresso++/espresso++-1.9.2.ebuild b/sci-physics/espresso++/espresso++-1.9.2.ebuild new file mode 100644 index 000000000000..2e7fd3905069 --- /dev/null +++ b/sci-physics/espresso++/espresso++-1.9.2.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils multilib python-single-r1 + +DESCRIPTION="extensible, flexible, fast and parallel simulation software for soft matter research" +HOMEPAGE="https://www.espresso-pp.de" + +if [[ ${PV} = 9999 ]]; then + EHG_REPO_URI="https://bitbucket.org/${PN//+/p}/${PN//+/p}" + EHG_REVISION="default" + inherit mercurial + KEYWORDS= +else + inherit vcs-snapshot + #SRC_URI="https://espressopp.mpip-mainz.mpg.de/Download/${PN//+/p}-${PV}.tgz" + SRC_URI="https://bitbucket.org/${PN//+/p}/${PN//+/p}/get/v${PV}.tar.bz2 -> ${P}.tar.bz2" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + virtual/mpi + dev-libs/boost[python,mpi,${PYTHON_USEDEP}] + sci-libs/fftw:3.0 + dev-python/mpi4py" +DEPEND="${RDEPEND}" + +DOCS=( AUTHORS NEWS README ) + +src_configure() { + mycmakeargs=( + -DEXTERNAL_BOOST=ON + -DEXTERNAL_MPI4PY=ON + -DLIB="$(get_libdir)" + -DWITH_RC_FILES=OFF + ) + cmake-utils_src_configure +} diff --git a/sci-physics/espresso++/espresso++-1.9.3.ebuild b/sci-physics/espresso++/espresso++-1.9.3.ebuild new file mode 100644 index 000000000000..55b02857e997 --- /dev/null +++ b/sci-physics/espresso++/espresso++-1.9.3.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils python-single-r1 + +DESCRIPTION="extensible, flexible, fast and parallel simulation software for soft matter research" +HOMEPAGE="https://www.espresso-pp.de" + +if [[ ${PV} = 9999 ]]; then + EHG_REPO_URI="https://bitbucket.org/${PN//+/p}/${PN//+/p}" + inherit mercurial + KEYWORDS= +else + inherit vcs-snapshot + #SRC_URI="https://espressopp.mpip-mainz.mpg.de/Download/${PN//+/p}-${PV}.tgz" + SRC_URI="https://bitbucket.org/${PN//+/p}/${PN//+/p}/get/v${PV}.tar.bz2 -> ${P}.tar.bz2" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + virtual/mpi + dev-libs/boost:=[python,mpi,${PYTHON_USEDEP}] + sci-libs/fftw:3.0 + dev-python/mpi4py" +DEPEND="${RDEPEND}" + +src_configure() { + local mycmakeargs=( + -DEXTERNAL_BOOST=ON + -DEXTERNAL_MPI4PY=ON + -DWITH_RC_FILES=OFF + ) + cmake-utils_src_configure +} diff --git a/sci-physics/espresso++/files/espresso++-1.6.0-multilib.patch b/sci-physics/espresso++/files/espresso++-1.6.0-multilib.patch new file mode 100644 index 000000000000..a66988b1bc82 --- /dev/null +++ b/sci-physics/espresso++/files/espresso++-1.6.0-multilib.patch @@ -0,0 +1,65 @@ +# HG changeset patch +# User Christoph Junghans <christoph.junghans@gmail.com> +# Date 1381325052 -7200 +# Node ID bcdda52214df0c007e44ec8d5045b0e68b142227 +# Parent 65da1a6110e59322efa1bb5eaff596baf9f07d5d +added LIB variable + +diff -r 65da1a6110e5 -r bcdda52214df CMakeLists.txt +--- a/CMakeLists.txt Tue Oct 08 20:52:46 2013 +0200 ++++ b/CMakeLists.txt Wed Oct 09 15:24:12 2013 +0200 +@@ -29,6 +29,9 @@ + option(BUILD_SHARED_LIBS "Build shared libs" ON) + option(BUILD_STANDALONE "Builds pypresso an standalone binary" OFF) + option(BUILD_PYTHON_MODULE "Builds epresso as python module" ON) ++if (NOT DEFINED LIB) ++ set(LIB "lib") ++endif(NOT DEFINED LIB) + + if(NOT BUILD_STANDALONE AND NOT BUILD_PYTHON_MODULE) + message(FATAL_ERROR "You need to enable pypresso or the python module") +diff -r 65da1a6110e5 -r bcdda52214df contrib/boost/CMakeLists.txt +--- a/contrib/boost/CMakeLists.txt Tue Oct 08 20:52:46 2013 +0200 ++++ b/contrib/boost/CMakeLists.txt Wed Oct 09 15:24:12 2013 +0200 +@@ -21,4 +21,4 @@ + + add_library(espresso_boost ${BOOST_SOURCES}) + target_link_libraries(espresso_boost ${PYTHON_LIBRARIES} ${VAMPIRTRACE_LIBRARIES} ${MPI_LIBRARIES} ${RT_LIBRARIES}) +-install(TARGETS espresso_boost LIBRARY DESTINATION lib ARCHIVE DESTINATION lib) ++install(TARGETS espresso_boost LIBRARY DESTINATION ${LIB} ARCHIVE DESTINATION lib) +diff -r 65da1a6110e5 -r bcdda52214df contrib/mpi4py/CMakeLists.txt +--- a/contrib/mpi4py/CMakeLists.txt Tue Oct 08 20:52:46 2013 +0200 ++++ b/contrib/mpi4py/CMakeLists.txt Wed Oct 09 15:24:12 2013 +0200 +@@ -12,4 +12,4 @@ + target_link_libraries(dl ${PYTHON_LIBRARIES} ${VAMPIRTRACE_LIBRARIES} ${MPI_LIBRARIES}) + set_target_properties(dl PROPERTIES PREFIX "" SUFFIX ".so") + +-install(TARGETS MPI LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION lib) ++install(TARGETS MPI LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION ${LIB}) +diff -r 65da1a6110e5 -r bcdda52214df src/CMakeLists.txt +--- a/src/CMakeLists.txt Tue Oct 08 20:52:46 2013 +0200 ++++ b/src/CMakeLists.txt Wed Oct 09 15:24:12 2013 +0200 +@@ -70,11 +70,11 @@ + add_library(espresso_common ${ESPRESSO_SOURCES}) + target_link_libraries(espresso_common pylogger ${BOOST} ${PYTHON_LIBRARIES} + ${VAMPIRTRACE_LIBRARIES} ${MPI_LIBRARIES} ${FFTW3_LIBRARIES}) +-install(TARGETS espresso_common LIBRARY DESTINATION lib ARCHIVE DESTINATION lib) ++install(TARGETS espresso_common LIBRARY DESTINATION ${LIB} ARCHIVE DESTINATION lib) + + add_library(pylogger esutil/PyLogger.cpp) + target_link_libraries(pylogger ${BOOST}) +-install(TARGETS pylogger LIBRARY DESTINATION lib ARCHIVE DESTINATION lib) ++install(TARGETS pylogger LIBRARY DESTINATION ${LIB} ARCHIVE DESTINATION lib) + + if(BUILD_STANDALONE) + add_executable(pypresso main/pypresso.cpp) +diff -r 65da1a6110e5 -r bcdda52214df src/pymodule/CMakeLists.txt +--- a/src/pymodule/CMakeLists.txt Tue Oct 08 20:52:46 2013 +0200 ++++ b/src/pymodule/CMakeLists.txt Wed Oct 09 15:24:12 2013 +0200 +@@ -5,5 +5,5 @@ + add_dependencies(_espresso scripts) + #python libs have not prefix (default would be 'lib') + set_target_properties(_espresso PROPERTIES PREFIX "" SUFFIX ".so") +- install(TARGETS _espresso LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION lib) ++ install(TARGETS _espresso LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION ${LIB}) + endif(BUILD_PYTHON_MODULE) diff --git a/sci-physics/espresso++/metadata.xml b/sci-physics/espresso++/metadata.xml new file mode 100644 index 000000000000..ee9feacef4f8 --- /dev/null +++ b/sci-physics/espresso++/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <maintainer> + <email>ottxor@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> +</pkgmetadata> diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest new file mode 100644 index 000000000000..638d0ca97c67 --- /dev/null +++ b/sci-physics/espresso/Manifest @@ -0,0 +1 @@ +DIST espresso-3.3.0.tar.gz 18952622 SHA256 64ea2684e4fc0d31c11969e49ec74c25138b4f74686f67b93c7e1103833ff08f SHA512 90edbbdc8d7f7247b5179fce0fad796a9488f82a1754519918c6588c932050675397d36e0167aae770db9803b6c22f7d14d23c04cf307d10802afd3d5d5edc20 WHIRLPOOL 3e9547f2da6676edf3de415fa848301f2959c3dfeef1c3f461b4e1eb202224ead7635748b47d42edb9f661dc5d672f38168e15ab6c55a9c9d7f102ae11f8574e diff --git a/sci-physics/espresso/espresso-3.3.0.ebuild b/sci-physics/espresso/espresso-3.3.0.ebuild new file mode 100644 index 000000000000..f35f8ce2d941 --- /dev/null +++ b/sci-physics/espresso/espresso-3.3.0.ebuild @@ -0,0 +1,136 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit autotools-utils python-single-r1 savedconfig + +DESCRIPTION="Extensible Simulation Package for Research on Soft matter" +HOMEPAGE="http://espressomd.org" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="git://git.savannah.nongnu.org/espressomd.git" + EGIT_BRANCH="master" + AUTOTOOLS_AUTORECONF=1 + inherit git-r3 + KEYWORDS="" +else + SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="X cuda doc examples +fftw mpi packages python test -tk" + +REQUIRED_USE=" + python? ( ${PYTHON_REQUIRED_USE} ) + tk? ( X )" + +RESTRICT="tk? ( test )" + +RDEPEND=" + python? ( + ${PYTHON_DEPS} + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) + dev-lang/tcl:0= + cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) + fftw? ( sci-libs/fftw:3.0 ) + mpi? ( virtual/mpi ) + packages? ( dev-tcltk/tcllib ) + tk? ( >=dev-lang/tk-8.4.18-r1:0= ) + X? ( x11-libs/libX11 )" + +DEPEND="${RDEPEND} + doc? ( + app-doc/doxygen[dot] + dev-texlive/texlive-latexextra + virtual/latex-base )" + +DOCS=( AUTHORS NEWS README ChangeLog ) +PATCHES=( "${FILESDIR}/${P}-cython-0.22.patch" ) + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_prepare() { + use cuda && cuda_src_prepare + autotools-utils_src_prepare +} + +src_configure() { + myeconfargs=( + $(use_with fftw) \ + $(use_with cuda) \ + $(use_with python python-interface) \ + $(use_with mpi) \ + $(use_with tk) \ + $(use_with X x) + ) + CXX=$(usex mpi "mpic++" "$(tc-getCXX)") autotools-utils_src_configure + restore_config myconfig.hpp +} + +src_compile() { + autotools-utils_src_compile + use doc && autotools-utils_src_compile doxygen + [[ ${PV} = 9999 ]] && use doc && autotools-utils_src_compile ug dg tutorials +} + +src_install() { + local i + + autotools-utils_src_install + + insinto /usr/share/${PN} + doins ${AUTOTOOLS_BUILD_DIR}/myconfig-sample.hpp + + save_config ${AUTOTOOLS_BUILD_DIR}/src/core/myconfig-final.hpp + + if use doc; then + if [[ ${PV} = 9999 ]] ; then + newdoc "${AUTOTOOLS_BUILD_DIR}"/doc/dg/dg.pdf developer_guide.pdf + newdoc "${AUTOTOOLS_BUILD_DIR}"/doc/ug/ug.pdf user_guide.pdf + for i in "${AUTOTOOLS_BUILD_DIR}"/doc/tutorials/*/[0-9]*.pdf; do + newdoc "${i}" "tutorial_${i##*/}" + done + else + newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf + for i in "${S}"/doc/tutorials/*/[0-9]*.pdf; do + newdoc "${i}" "tutorial_${i##*/}" + done + fi + dohtml -r "${AUTOTOOLS_BUILD_DIR}"/doc/doxygen/html/* + fi + + if use examples; then + insinto /usr/share/${PN}/examples + doins -r samples/* + fi + + if use packages; then + insinto /usr/share/${PN}/packages + doins -r packages/* + fi +} + +pkg_postinst() { + echo + elog "Please read and cite:" + elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006." + elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005" + echo + elog "If you need more features, change" + elog "/etc/portage/savedconfig/${CATEGORY}/${PF}" + elog "and reemerge with USE=savedconfig" + echo + elog "For a full feature list see:" + elog "/usr/share/${PN}/myconfig-sample.h" + echo +} diff --git a/sci-physics/espresso/files/espresso-3.3.0-cython-0.22.patch b/sci-physics/espresso/files/espresso-3.3.0-cython-0.22.patch new file mode 100644 index 000000000000..22b726b480e1 --- /dev/null +++ b/sci-physics/espresso/files/espresso-3.3.0-cython-0.22.patch @@ -0,0 +1,23 @@ +From 9e6caa3294b0f5f377c16550a07429b73c871ac3 Mon Sep 17 00:00:00 2001 +From: Christoph Junghans <junghans@votca.org> +Date: Thu, 12 Mar 2015 08:55:51 -0600 +Subject: [PATCH] fix build with cython-0.22 + +--- + src/python/espressomd/particle_data.pxd | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/python/espressomd/particle_data.pxd b/src/python/espressomd/particle_data.pxd +index fff022b..4cc39e8 100644 +--- a/src/python/espressomd/particle_data.pxd ++++ b/src/python/espressomd/particle_data.pxd +@@ -185,5 +185,5 @@ cdef class ParticleHandle(object): + cdef public int id + cdef bint valid + cdef Particle particleData +- cdef int updateParticleData(self) ++ cdef int updateParticleData(self) except -1 + +-- +2.0.5 + diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml new file mode 100644 index 000000000000..1ef3470bdd04 --- /dev/null +++ b/sci-physics/espresso/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <maintainer> + <email>ottxor@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> + <use> + <flag name="cuda">Enable cuda support</flag> + <flag name="examples">Installs the examples</flag> + <flag name="packages">Installs extra subpackages</flag> + </use> +</pkgmetadata> diff --git a/sci-physics/fastjet/Manifest b/sci-physics/fastjet/Manifest new file mode 100644 index 000000000000..86da395fe0ae --- /dev/null +++ b/sci-physics/fastjet/Manifest @@ -0,0 +1,2 @@ +DIST fastjet-3.0.3.tar.gz 2240610 SHA256 6a3e5869cf43b325c7222a925e195b2bd624db922958a926cb4211c00882a50d SHA512 1fcdd0998d222ae089f10676ae1048fdce3e90f6aef3cd51463719b7ab26f8bcdd599d9521c6f9ef18e3989dbffd7f06da717ce845ab7e486a99433129b56f41 WHIRLPOOL b43091b978bde5189ed009ad424934d45607717bfc81e4d0b49c1ce634650bbf9e51019c7bfb0f6ce6298a697e6c8be296feaae1ac31bd2184e44b53a538ba48 +DIST fastjet-3.0.6.tar.gz 2216501 SHA256 9718f1d014afe4433bc0612a67a050d720c486fcfa7ad9c9b96bf087b0f3da0b SHA512 1f01b7ed0e07bd94c88faa123f72c2e3bcd81ad32ab4d03dc0a18dd18635f3b18ba8d339176b0ef1d6e58cecd9f37aaea30b4ad909d2782ce5be7c11e205c3a5 WHIRLPOOL 8c1aeab2724940e41ca6eed093582d6d9a5424b7f2b86af00bd7e1fedd3df0157538c6d97ff08147a4e3a5300d035d683df31b4a7a9d36bc9c14eca9375ae1e1 diff --git a/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild new file mode 100644 index 000000000000..230e4ab48bcb --- /dev/null +++ b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +AUTOTOOLS_AUTORECONF=yes + +FORTRAN_NEEDED=plugins + +inherit autotools-utils fortran-2 flag-o-matic + +DESCRIPTION="Fast implementation of several recombination jet algorithms" +HOMEPAGE="http://www.fastjet.fr/" +SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz" + +LICENSE="GPL-2 QPL" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cgal doc examples +plugins static-libs" + +RDEPEND="cgal? ( sci-mathematics/cgal )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] ) + plugins? ( sci-physics/siscone )" + +PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch ) + +src_configure() { + use cgal && has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp + local myeconfargs=( + $(use_enable cgal) + $(use_enable plugins allplugins) + $(use_enable plugins allcxxplugins) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + if use doc; then + doxygen Doxyfile || die + fi +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF} + find example \ + -name Makefile -or Makefile.in -or Makefile.am -delete + doins -r example/* + fi +} diff --git a/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild new file mode 100644 index 000000000000..1aa627e9fddb --- /dev/null +++ b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=plugins +AUTOTOOLS_AUTORECONF=1 + +inherit autotools-utils fortran-2 flag-o-matic + +DESCRIPTION="Fast implementation of several recombination jet algorithms" +HOMEPAGE="http://www.fastjet.fr/" +SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz" + +LICENSE="GPL-2 QPL" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cgal doc examples +plugins static-libs" + +RDEPEND="cgal? ( sci-mathematics/cgal )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] ) + plugins? ( sci-physics/siscone:0= )" + +PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch ) + +src_configure() { + use cgal && \ + has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp + local myeconfargs=( + $(use_enable cgal) + $(use_enable plugins allplugins) + $(use_enable plugins allcxxplugins) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + if use doc; then + doxygen Doxyfile || die + fi +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF} + find example \ + -name Makefile -or Makefile.in -or Makefile.am -delete + doins -r example/* + fi +} diff --git a/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch new file mode 100644 index 000000000000..b74b8e4e9033 --- /dev/null +++ b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch @@ -0,0 +1,83 @@ +diff -Nur fastjet-3.0.3.orig/configure.ac fastjet-3.0.3/configure.ac +--- fastjet-3.0.3.orig/configure.ac 2012-06-25 15:15:32.000000000 +0100 ++++ fastjet-3.0.3/configure.ac 2012-07-24 18:39:11.000000000 +0100 +@@ -14,7 +14,7 @@ + dnl - the first macro needs to place the files in the correct + dnl dir in order to have the correct -I options for the remote build + dnl - see Makefile.am for distcleaning AX_PREFIX_CONFIG_H leftovers +-AM_CONFIG_HEADER(include/fastjet/config_raw.h:config.h.in) ++AC_CONFIG_HEADERS(include/fastjet/config_raw.h:config.h.in) + AX_PREFIX_CONFIG_H(include/fastjet/config_auto.h,FASTJET,include/fastjet/config_raw.h) + + dnl check autoconf version +@@ -252,6 +252,12 @@ + fi + + dnl SISCone ++AC_ARG_WITH(bundle-siscone, ++ [ --with-bundle-siscone Build the bundled SISCone library [default=no]], ++ [bundle_siscone=$withval], ++ [bundle_siscone=no]) ++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno) ++ + ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes, + [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone" + CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"]) +diff -Nur fastjet-3.0.3.orig/example/Makefile.am fastjet-3.0.3/example/Makefile.am +--- fastjet-3.0.3.orig/example/Makefile.am 2012-06-13 15:14:58.000000000 +0100 ++++ fastjet-3.0.3/example/Makefile.am 2012-07-24 18:26:15.000000000 +0100 +@@ -43,7 +43,7 @@ + 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include + 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la + else + EXTRA_DIST += 03-plugin.cc + endif +@@ -125,7 +125,7 @@ + fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + if BUILD_PLUGIN_SISCONE + fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + + fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc +@@ -135,7 +135,7 @@ + fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la + if BUILD_PLUGIN_SISCONE + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + if BUILD_PLUGIN_CDFCONES + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones +diff -Nur fastjet-3.0.3.orig/plugins/SISCone/Makefile.am fastjet-3.0.3/plugins/SISCone/Makefile.am +--- fastjet-3.0.3.orig/plugins/SISCone/Makefile.am 2012-06-13 15:14:51.000000000 +0100 ++++ fastjet-3.0.3/plugins/SISCone/Makefile.am 2012-07-24 18:36:56.000000000 +0100 +@@ -1,11 +1,22 @@ +-SUBDIRS = siscone fastjet . ++SUBDIRS = fastjet . + + if MONOLITHIC_PLUGINS + noinst_LTLIBRARIES = libSISConePlugin.la + else + lib_LTLIBRARIES = libSISConePlugin.la + endif +-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include ++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include ++ ++if BUNDLE_SISCONE ++SUBDIRS += siscone ++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone ++libSISConePlugin_la_LIBADD = \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++else ++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical ++endif ++ + libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc + + EXTRA_DIST = makefile.static diff --git a/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch new file mode 100644 index 000000000000..d3995473fe54 --- /dev/null +++ b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch @@ -0,0 +1,74 @@ +diff -Nur fastjet-3.0.6.orig/configure.ac fastjet-3.0.6/configure.ac +--- fastjet-3.0.6.orig/configure.ac 2014-05-06 10:29:55.240632504 -0700 ++++ fastjet-3.0.6/configure.ac 2014-05-06 10:36:20.156246416 -0700 +@@ -261,6 +261,12 @@ + fi + + dnl SISCone ++AC_ARG_WITH(bundle-siscone, ++ [ --with-bundle-siscone Build the bundled SISCone library [default=no]], ++ [bundle_siscone=$withval], ++ [bundle_siscone=no]) ++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno) ++ + ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes, + [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone" + CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"]) +diff -Nur fastjet-3.0.6.orig/example/Makefile.am fastjet-3.0.6/example/Makefile.am +--- fastjet-3.0.6.orig/example/Makefile.am 2014-05-06 10:29:55.239632499 -0700 ++++ fastjet-3.0.6/example/Makefile.am 2014-05-06 10:36:20.156246416 -0700 +@@ -43,7 +43,7 @@ + 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include + 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la + else + EXTRA_DIST += 03-plugin.cc + endif +@@ -125,7 +125,7 @@ + fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + if BUILD_PLUGIN_SISCONE + fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + + fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc +@@ -135,7 +135,7 @@ + fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la + if BUILD_PLUGIN_SISCONE + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + if BUILD_PLUGIN_CDFCONES + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones +diff -Nur fastjet-3.0.6.orig/plugins/SISCone/Makefile.am fastjet-3.0.6/plugins/SISCone/Makefile.am +--- fastjet-3.0.6.orig/plugins/SISCone/Makefile.am 2014-05-06 10:29:55.250632584 -0700 ++++ fastjet-3.0.6/plugins/SISCone/Makefile.am 2014-05-06 10:36:20.156246416 -0700 +@@ -1,11 +1,22 @@ +-SUBDIRS = siscone fastjet . ++SUBDIRS = fastjet . + + if MONOLITHIC_PLUGINS + noinst_LTLIBRARIES = libSISConePlugin.la + else + lib_LTLIBRARIES = libSISConePlugin.la + endif +-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include ++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include ++ ++if BUNDLE_SISCONE ++SUBDIRS += siscone ++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone ++libSISConePlugin_la_LIBADD = \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++else ++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical ++endif ++ + libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc + + EXTRA_DIST = makefile.static diff --git a/sci-physics/fastjet/metadata.xml b/sci-physics/fastjet/metadata.xml new file mode 100644 index 000000000000..21ba005f8078 --- /dev/null +++ b/sci-physics/fastjet/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + The FastJet package provides a fast implementation of the + longitudinally invariant kt longitudinally invariant inclusive + Cambridge/Aachen and anti-kt jet finders and a uniform interface + to external jet finders (notably SISCone) via a plugin + mechanism. It also includes tools for calculating jet areas and + performing background (pileup/UE) subtraction. +</longdescription> +<use> + <flag name="plugins"> Build all standard and C++ plugins </flag> + <flag name="cgal"> Use <pkg>sci-mathematics/cgal</pkg> instead of + bundled algorithms</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/geant-data/Manifest b/sci-physics/geant-data/Manifest new file mode 100644 index 000000000000..fddec912ae51 --- /dev/null +++ b/sci-physics/geant-data/Manifest @@ -0,0 +1,20 @@ +DIST G4ABLA.3.0.tar.gz 54909 SHA256 ff0b77be6b36204eeeba71099f6b7530edd80b79eb015994535bc4334bc821eb SHA512 905a56c142793de005dc5771509cdd8c4f98e596b95223a1a058cbf614cf48805478839eeec3a29594daf3d89c6b4d72cb33b016a596cdadc4247e452afbd526 WHIRLPOOL daa65dd65160cfa62b1a7b747702cc6cf41230f95b406e2e5e18a743524647842639e8c76906334671d00860b88139f4812c811307803bdc4260468b4c6703cb +DIST G4EMLOW.6.32.tar.gz 17724068 SHA256 bdb3c00af89b18c21553d79fd823110429fdcf1e83c029aa450185d9caf4a7cf SHA512 c1abc0f5e69cd29f5d3885e672937cfe4ff7ec1a37847e6def6e3dd80ba120bb10cfdd80ccfeadc9ed2c37423a87a185ef2b70f78716c8b40a48277a5c0e65fb WHIRLPOOL 5bcb17be16eddd474a3c96f305a968422ca11075683065c3bc3442289fde6b386f04552dbba4d2635ecabd86a79e558b559f0e7aab20960b1774c24291247231 +DIST G4EMLOW.6.35.tar.gz 19092577 SHA256 1564045a0acad344c8d432cd48c2c3bb2e051a81ab3099a84e0f56ba0fe82cec SHA512 106bd9de3a3b729629341f6e3b18bce3ee61239fe7bcf543da5d456a4db9a835a781b64b3b56d1a43e449e41f2d9447f17d3fbbd6006772333237d7f7b7012ab WHIRLPOOL 1cbabfe8195d3e0f477309a1a2579151bb2b39e1b145a0052fcfcff7099fd59e23a588c677f501a181b84aa35ef34a8620076b60124e8167bb68fd824efbbf9e +DIST G4EMLOW.6.41.tar.gz 19955388 SHA256 6d878b18bf5e748e9d0ea35ef67eebab16df80cc912402986a03a5e1935f4af2 SHA512 4e146ec71efeca63569bc5522f885ba77e3a3b472b2ca7c1a7bcfb6247838b42d6937eccf7f94c899fafa52ffc8cf233fb924684b3fa7c6a3f11ddbca0a03a6b WHIRLPOOL 6ba8d59067da74b5d6a8c286cf7e3cb9f8dfd700356dfa7fedffcc3500eefef0f5c68dac293e2450d63a8946d7a10a6c39a3d343018ea4feacc75a902c84e28b +DIST G4ENSDFSTATE.1.0.tar.gz 234612 SHA256 4562e7476aa2df7204a1a77263e9d2331e9ffcdb591d11814dcc2d6b605021dd SHA512 ac3f4c4206976e4bbae93f81faca6bd2ce3d86fc10470abe3a06de2b5df58cdb110f4ab4988bfa16d1671759804874977b4feb4cc5bb0930e03c0db1b4c0a112 WHIRLPOOL 0ef5c0355f3f01faaa8ab1ce5e0dcba4cae7218817441cf7831517f419860584f6fc9d60daf74d5cb09b27e0abdf4a0ad2263cef0bb2b9d35ef34d9c0d1d7a36 +DIST G4NDL.4.2.tar.gz 303309551 SHA256 173f60a506b9176d7ff531d6a5f6195dcec74df30ffafc09644f47f979bd641b SHA512 64397c38afbca4365dfed6898220a6946f00f86c5f52ad23b3d10d0ce79504b74ac653ea398f21e1724e4370573f23a62c016490cfed26cc70745a82d9beb7c0 WHIRLPOOL 1c50cd2cf258aeb8a5d029d945eb5dcdb84399012fd693c44fcb98e2d7f4381717138e6a31919235eea268fcf54072c973858040e7e6968764d3036c84090fe7 +DIST G4NDL.4.4.tar.gz 421555304 SHA256 e9fe8800566a83ccaf9b5229a1fa1d2cd24530bbd2e9fcb96eb6b5b117233071 SHA512 25a26411bf6430e90ec5b8098d12259a60bf688728ef9b97afda66002d8f479dadf9ce8c16c4cfd8068da173d492f7667748802690eb29787e9388c1773c8ade WHIRLPOOL 0575033751e881d8ba8ae04ba06d1c788b89ee3c294b8543da817096e1782e82cff9a5b794096694eaa743411bc695d94353ad0ee3f5f1781a1bd2d3753b4557 +DIST G4NDL.4.5.tar.gz 421710294 SHA256 cba928a520a788f2bc8229c7ef57f83d0934bb0c6a18c31ef05ef4865edcdf8e SHA512 166d0189693f14c08fa9c48e4212c1cb275a848fdf0be3dfc4240bd01d1d4816f3ec3c85149995192e7055b58fd56c7e078e9d6819e01fdeafc13457bfa90470 WHIRLPOOL 0eaed7d62b513cc3381c811d282619aebb01e4777c922d89208d58f7b6ec666a398359d983f9cbbd8b6ede53399f7d24b2d7ebac3f1973fc1d1a07d04b4e52cb +DIST G4NDL4.2.TS.tar.gz 128939542 SHA256 641972c6001fc8f7d4d55e428cf9237e9ae0e44ab0c4940dfbb05e657a8b9851 SHA512 8466b3bb9a604460ba713847dc59bae7cbc5af8204754eb8d46f83bc40e9bb6afff17433bb96fb76f17b4633c6dab6af88e49d30916a1b0bca18f705c18c6779 WHIRLPOOL 3074ad131888eec9e0dfd4fa018d9504437129e0a5b59df09e161970a69b6af9121ba2ac25aca1203d99b8faf831cb60dd90e217c320efd203032639d4e2fa10 +DIST G4NEUTRONXS.1.2.tar.gz 2221211 SHA256 9ce488505b4c3623e2d98209f708a30e3f213a1371a9110d289257a02b2d7d5c SHA512 94a71e7865c0dd4eab7b477d2cd115b3a90fd3528e7807e5ef85651e1add82b1478753c3382437b22b0ec2e774a12d2af942dffaca6c944229553b240a1594bb WHIRLPOOL 2250323bd915963b5efd92c02a946025d367d3530750b5240cbe1338b253f1dea3467b8c8cd16a9a20b70c9654005ae239863d5cfbd78dd6700b5ff17da209fc +DIST G4NEUTRONXS.1.4.tar.gz 2249001 SHA256 57b38868d7eb060ddd65b26283402d4f161db76ed2169437c266105cca73a8fd SHA512 f0de306e35d0cacc77fcea4d233077247afa172413a69ef1255e47fd250e36460c38c47265dbc81499dd47c0aca7266c5299cb5c0cabef04684b796ba890f944 WHIRLPOOL 17426f0e690768f789fe9409c01c2b23689745f9a6bef85e825ec25de4b0e166bb93729c174c4162ca5aa5871ba3c367a6b6fd6dfa25c2dfab2e1cd7db67b859 +DIST G4PII.1.3.tar.gz 4293607 SHA256 6225ad902675f4381c98c6ba25fc5a06ce87549aa979634d3d03491d6616e926 SHA512 dc458f5845948f54315477886d28fd51ea2d45f3675f45d42e8352cc5961705d920d200097dc9b55ad826ff426a655258b970ddd5a96867f706eb14e9ebbfd1a WHIRLPOOL 97c0aa7055ee6aaae30223a59f71edc11126560187cf038cd47fbe69c62b610e01f33d7b8d856aaa3f145c08d2bb4fc31047849634e57a6516dd197d6f53be79 +DIST G4PhotonEvaporation.2.3.tar.gz 7508401 SHA256 60449df933794aa0ad3938886c8c023e3093ff59ad6c752923390d5c550f34cb SHA512 1db97368f6579565447083a912ead17cd0fa1021d13aada4ed514e1b3245ff03509c963a064a97a1c7d5f5530ac036427c6c9e29be198976daebe8623c41e664 WHIRLPOOL a1651adbaf38132f89419b9821a1af4e741c3a058016f4946d815b5d48cd096ea057632f91142ac6d87cb38b24b1f26c664601f5838e92a03189c5227daa16c7 +DIST G4PhotonEvaporation.3.0.tar.gz 8864188 SHA256 c76a843672eca21110e97a274a6b5cd9a58b66f35235301c8e1b162926e0e7cb SHA512 a185e034e5d53a5f0aa00a0a701e40c47a667bafe78a41153d2846b102ce578f2a0bda6f95cd5102a8abb752070c91597ca6f940ca0d9ebe7b2eb67529dca552 WHIRLPOOL 0420b01dcc276f8e3561899f15a010d5169cb236280f0b5a988c849f15f5face3b513e9aa75442ccff610cfbd9f7e747c44c9a2633a1167b60984224cdcba31b +DIST G4PhotonEvaporation.3.1.tar.gz 8406135 SHA256 276ac5f7b45ce96ae0927c7a3fff0942b7007cfe9339540fc22554fea433142e SHA512 415cd4ed7f080ad0003fa106c214d564a6f8a6693e3ddab16fff0ae7ce97aea233c672e0624dac54ce0c8daaddb4f5678c0daad446d2dd3da41df2ef055de419 WHIRLPOOL e681ae24716b5832f02b977762a30a253019540c892c50969930dfef311e3d36e5f930107e0fda22f5988bd53cdd0ba682fb7d8c04cadb72548fcb136b9b0aa7 +DIST G4RadioactiveDecay.3.6.tar.gz 736879 SHA256 3502ed4be04d694115a3acf59d7a3593725a2d79f3adad0ffa135ff653f89d1d SHA512 30502587d5f1cd5e365c6803e286bcb469999642fdc56bb8f162736b31334f09aae9f96bd71ac1a664fca7a303127c10c5ffe5b460e846756977e97a5f958d51 WHIRLPOOL c991d159c952a6d59e355cd0a691a5a9a8de07bb8985cdc4797853a56c38b3f6320928a3dc1fa19d21a35be9dddc7d6901116f10bb347b2a5bcef70dbe71c06e +DIST G4RadioactiveDecay.4.0.tar.gz 985509 SHA256 ed2053bddee507920a29a27db4364fbef255b951597686b0410d5458e9b38cb5 SHA512 5caa7b69643acb3071003a81950177061d8221c2b64e9babc46f8aebfe97cea2875ff664183b441a37f0b2c0fb7b3624998ac3f012a2e0308c5fd1ab4b7b8f8d WHIRLPOOL ece7aa1f4734b69af8cceaab6dc7c573ea962efd332e1e778ec1e0b7abf15c7acdaddfd518e6e357633214a58621b076b6ec88836fc7ba945b191cc56b79e325 +DIST G4RadioactiveDecay.4.2.tar.gz 997307 SHA256 cf1946d9e2c222ec1311e7ed94a54a6646cf519b71299e2297a6be3c85ba3c82 SHA512 4d2f2283e8355f2c3f7dee2dabed5123ebe52c4ee255e41841edc64a94a8a85255b4c0ed382a99af67ff605a624ed87d6230c2deb4b6b4df2d16f82079dfea3d WHIRLPOOL 03ad64db8e993d7609e007e3656d0cec6a1e8cb9c3fecf343eab6d53c11688ef647c713a569a3bfb8702a75b4898d1b1a7e60e84c6c622d730c50c6fc26720ea +DIST G4SAIDDATA.1.1.tar.gz 25800 SHA256 a38cd9a83db62311922850fe609ecd250d36adf264a88e88c82ba82b7da0ed7f SHA512 191627972dbf859e40e07ec4a63c5e7300571da6792c2588a6ad997e246c3fc41e890679aced918ba2496586da643c23884c4d9754329387e3579e52c87b6202 WHIRLPOOL d47075356db9e5589f12c03563143d1fd816e78d165785d5f37a415a8f1504be8e471064b81311f27a54cf108259dec07b0ef22fbc30374afaa4d46d7e7b648a +DIST RealSurface.1.0.tar.gz 1257863 SHA256 3e2d2506600d2780ed903f1f2681962e208039329347c58ba1916740679020b1 SHA512 6457e1931fe1989f822493dbcb3193d97fdb37ecdc8341e953af1fb66816aa589e9d5abaa8a937e4599924c005fc32c763dd0db9af567c4c94aa07fae292be76 WHIRLPOOL 7b36a782278a663866b5676fda2ed5425c61219804aaa3fb6042455f6815e0e16a0f82445947d6e1a9585b9c09fb88fb70230bfd692f3bf10aa4ac8c43c37cae diff --git a/sci-physics/geant-data/geant-data-4.10.00.ebuild b/sci-physics/geant-data/geant-data-4.10.00.ebuild new file mode 100644 index 000000000000..35aeb9274a26 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.00.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.4 + G4EMLOW.6.35 + G4RadioactiveDecay.4.0 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4PII.1.3 + G4PhotonEvaporation.3.0 + G4ABLA.3.0 + RealSurface.1.0 + G4ENSDFSTATE.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.10.01.ebuild b/sci-physics/geant-data/geant-data-4.10.01.ebuild new file mode 100644 index 000000000000..834d92861570 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.01.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.5 + G4EMLOW.6.41 + G4RadioactiveDecay.4.2 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4PII.1.3 + G4PhotonEvaporation.3.1 + G4ABLA.3.0 + RealSurface.1.0 + G4ENSDFSTATE.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild b/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild new file mode 100644 index 000000000000..d2078df93a54 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +NDLPV=4.2 +GEANT4_DATA=" + G4NDL.${NDLPV} + G4EMLOW.6.32 + G4RadioactiveDecay.3.6 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.2 + G4PII.1.3 + G4PhotonEvaporation.2.3 + G4ABLA.3.0 + RealSurface.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +SRC_URI="${SRC_COM}/G4NDL${NDLPV}.TS.tar.gz" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="~sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/metadata.xml b/sci-physics/geant-data/metadata.xml new file mode 100644 index 000000000000..da64a592e0ee --- /dev/null +++ b/sci-physics/geant-data/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + For specific, optional physics processes, Geant4 uses extra data + which are being installed with this package. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/geant-python/Manifest b/sci-physics/geant-python/Manifest new file mode 100644 index 000000000000..7ba827c92786 --- /dev/null +++ b/sci-physics/geant-python/Manifest @@ -0,0 +1,2 @@ +DIST geant4.10.00.tar.gz 30780131 SHA256 ffec1714b03748b6d691eb0b91906f4c74422c1ad1f8afa918e03be421af8a17 SHA512 c9288b26df8b858622e728158b687cd7bc257c49f26a21b93d1b9fa4619c22dfea2a7604689118ac493b407888690db42d1ec9c8048aa1f45bf8beeb6a657e87 WHIRLPOOL 20eb2002e867a0fe3dab683820ebeeb5de2140c5cd7c4c57c07b5da2a62900d4ee2bf1f6372e034781ed536001e40a5a79d5654729e45a16995415febfefb26d +DIST geant4.9.6.p02.tar.gz 25480383 SHA256 cf5df83b7e2c99e6729449b32d3ecb0727b4692317426b66fc7fd41951c7351f SHA512 dab5f31568074869adecbbfb8855be0c0a2e92e5ba3119dbeb9cd414878721df3052198a05e5e3c19d0e2942a22602c6618dc0628b05134d3403a50c2bc2032c WHIRLPOOL 8c66d8aa1605a42e6b6f054c32eb49df0bb2afcdf54360ff630908ce7cfc8a7a37b62cdb2a1612af05f1f70a5575c6516aad1f6737a67692449b01e1137b2865 diff --git a/sci-physics/geant-python/files/geant-python-4.10.0-config.patch b/sci-physics/geant-python/files/geant-python-4.10.0-config.patch new file mode 100644 index 000000000000..50f4dabb43c3 --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.10.0-config.patch @@ -0,0 +1,27 @@ +do not hard code PATH; QGSP.hh is renamed to G4QGSParticipants.hh in geant-4.10 + +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1545 +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1546 +Index: g4py/configure +=================================================================== +--- g4py.orig/configure ++++ g4py/configure +@@ -4,9 +4,6 @@ + # ====================================================================== + export LANG=C + +-PATH=/bin:/usr/bin +-export PATH +- + # ====================================================================== + # testing the echo features + # ====================================================================== +@@ -377,7 +374,7 @@ fi + + # --- + echo $ac_n "Checking for physics list support ...$ac_c" +-if [ -f "$g4_incdir"/QGSP.hh ]; then ++if [ -f "$g4_incdir"/G4QGSParticipants.hh ]; then + enable_physicslist=1 + fi + if [ $enable_physicslist = 0 ]; then diff --git a/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch b/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch new file mode 100644 index 000000000000..492e4700ac4f --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch @@ -0,0 +1,15 @@ +polycone API has been changed. + +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1544 +Index: g4py/source/geometry/pyG4Polycone.cc +=================================================================== +--- g4py.orig/source/geometry/pyG4Polycone.cc ++++ g4py/source/geometry/pyG4Polycone.cc +@@ -96,7 +96,6 @@ void export_G4Polycone() + .def("GetStartPhi", &G4Polycone::GetStartPhi) + .def("GetEndPhi", &G4Polycone::GetEndPhi) + .def("IsOpen", &G4Polycone::IsOpen) +- .def("IsGeneric", &G4Polycone::IsGeneric) + .def("GetNumRZCorner", &G4Polycone::GetNumRZCorner) + + // operators diff --git a/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch b/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch new file mode 100644 index 000000000000..0508f28b6fa6 --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch @@ -0,0 +1,13 @@ +diff --git a/source/visualization/pyG4VisManager.cc b/source/visualization/pyG4VisManager.cc +index 33bb0d4..00f86a5 100644 +--- a/source/visualization/pyG4VisManager.cc ++++ b/source/visualization/pyG4VisManager.cc +@@ -41,7 +41,7 @@ using namespace boost::python; + // ==================================================================== + class PyG4VisManager : public G4VisManager { + public: +- PyG4VisManager() { SetVerboseLevel(quiet); } ++ PyG4VisManager() { SetVerboseLevel(all); } + ~PyG4VisManager() { } + + virtual void RegisterGraphicsSystems() { } diff --git a/sci-physics/geant-python/geant-python-4.10.00.ebuild b/sci-physics/geant-python/geant-python-4.10.00.ebuild new file mode 100644 index 000000000000..d677e3e28a6b --- /dev/null +++ b/sci-physics/geant-python/geant-python-4.10.00.ebuild @@ -0,0 +1,122 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit python-r1 versionator multilib eutils + +MYP="geant$(replace_version_separator 3 .)" + +DESCRIPTION="Python bindings for Geant4" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="geant4" +SLOT="0" +IUSE="examples" + +RDEPEND=" + ${PYTHON_DEPS} + dev-libs/boost[${PYTHON_USEDEP}] + dev-libs/xerces-c + =sci-physics/geant-${PV}*" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}/environments/g4py" + +pkg_setup() { + if use amd64; then + ARG=linux64 + elif use x86; then + ARG=linux + else + die "platform unknown" + fi +} + +src_prepare() { + epatch "${FILESDIR}"/${PN}-4.9.5-visverbose.patch + epatch "${FILESDIR}"/${PN}-4.10.0-config.patch + epatch "${FILESDIR}"/${PN}-4.10.0-polycone.patch + sed -i -e "s/lib64/$(get_libdir)/g" configure || die + sed -i -e 's/-lG4clhep/-lCLHEP/g' config/g4py.gmk || die + # respect user toolchain and flags + sed -i \ + -e '/^CXX.*:=/d' \ + -e '/CXXFLAGS/s/-f\(template-depth-255\|inline-functions\|permissive\)//g' \ + -e "/CXXFLAGS/s/-O2/${CXXFLAGS}/g" \ + -e '/^rpathflag/s|:\($(rpath.)\)| -Wl,-rpath,\1 |g' \ + -e "s/\$(rpathflag)/\$(LDFLAGS) \$(rpathflag)/g" \ + config/sys/linux* || die + python_copy_sources + + run_sed() { + sed -i -e "s/\(python_exe=\)python/\1${EPYTHON}/" configure || die + [[ ${EPYTHON} == python3* ]] && sed -i -e "s/with_python3=0/with_python3=1/" configure + # let Geant4 module installed into python sitedir instead of default + sed -i \ + -e "/G4PY_LIBDIR :=/cG4PY_LIBDIR := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + config/install.gmk || die "sed failed on config/install.gmk" + + local mfile + for mfile in source/python{3,}/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + "${mfile}" || die "sed failed on ${mfile}" + done + + # let g4py module installed into python sitedir instead of default + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + config/site-install.gmk || die "sed failed on config/site-install.gmk" + for mfile in {processes/emcalculator,utils/MCScore}/{python3/,}GNUmakefile python/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + "site-modules/${mfile}" || die "sed failed on site-modules/${mfile}" + done + + } + python_foreach_impl run_in_build_dir run_sed +} + +src_configure() { + run_configure() { + # not the autotools configure + ./configure ${ARG} \ + --prefix="${EPREFIX}/usr" \ + --with-g4install-dir="${EPREFIX}/usr" \ + --with-python-incdir="$(python_get_includedir)" \ + --with-python-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-incdir="${EPREFIX}/usr/include" \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-python-lib="boost_python-${EPYTHON#python}" \ + --with-xercesc-incdir="${EPREFIX}/usr/include" \ + --with-xercesc-libdir="${EPREFIX}/usr/$(get_libdir)" \ + || die "configure failed" + } + python_foreach_impl run_in_build_dir run_configure +} + +src_compile() { + python_foreach_impl run_in_build_dir emake CPPVERBOSE=1 +} + +src_test() { + run_test() { + emake -C tests + } + python_foreach_impl run_in_build_dir run_test +} + +src_install() { + python_foreach_impl run_in_build_dir emake DESTDIR="${D}" install + dodoc README.md History + insinto /usr/share/doc/${PF} + use examples && doins -r examples +} diff --git a/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild b/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild new file mode 100644 index 000000000000..d054aa4e6c61 --- /dev/null +++ b/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild @@ -0,0 +1,120 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit python-r1 versionator multilib eutils + +MYP="geant$(replace_version_separator 3 .)" + +DESCRIPTION="Python bindings for Geant4" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="geant4" +SLOT="0" +IUSE="examples" + +RDEPEND=" + ${PYTHON_DEPS} + dev-libs/boost[${PYTHON_USEDEP}] + dev-libs/xerces-c + =sci-physics/geant-${PV}*" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}/environments/g4py" + +pkg_setup() { + if use amd64; then + ARG=linux64 + elif use x86; then + ARG=linux + else + die "platform unknown" + fi +} + +src_prepare() { + epatch "${FILESDIR}"/${PN}-4.9.5-visverbose.patch + sed -i -e "s/lib64/$(get_libdir)/g" configure || die + sed -i -e 's/-lG4clhep/-lCLHEP/g' config/g4py.gmk || die + # respect user toolchain and flags + sed -i \ + -e '/^CXX.*:=/d' \ + -e '/CXXFLAGS/s/-f\(template-depth-255\|inline-functions\|permissive\)//g' \ + -e "/CXXFLAGS/s/-O2/${CXXFLAGS}/g" \ + -e '/^rpathflag/s|:\($(rpath.)\)| -Wl,-rpath,\1 |g' \ + -e "s/\$(rpathflag)/\$(LDFLAGS) \$(rpathflag)/g" \ + config/sys/linux* || die + python_copy_sources + + run_sed() { + sed -i -e "s/\(python_exe=\)python/\1${EPYTHON}/" configure || die + [[ ${EPYTHON} == python3* ]] && sed -i -e "s/with_python3=0/with_python3=1/" configure + # let Geant4 module installed into python sitedir instead of default + sed -i \ + -e "/G4PY_LIBDIR :=/cG4PY_LIBDIR := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + config/install.gmk || die "sed failed on config/install.gmk" + + local mfile + for mfile in source/python{3,}/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + "${mfile}" || die "sed failed on ${mfile}" + done + + # let g4py module installed into python sitedir instead of default + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + config/site-install.gmk || die "sed failed on config/site-install.gmk" + for mfile in {processes/emcalculator,utils/MCScore}/{python3/,}GNUmakefile python/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + "site-modules/${mfile}" || die "sed failed on site-modules/${mfile}" + done + + } + python_foreach_impl run_in_build_dir run_sed +} + +src_configure() { + run_configure() { + # not the autotools configure + ./configure ${ARG} \ + --prefix="${EPREFIX}/usr" \ + --with-g4install-dir="${EPREFIX}/usr" \ + --with-python-incdir="$(python_get_includedir)" \ + --with-python-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-incdir="${EPREFIX}/usr/include" \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-python-lib="boost_python-${EPYTHON#python}" \ + --with-xercesc-incdir="${EPREFIX}/usr/include" \ + --with-xercesc-libdir="${EPREFIX}/usr/$(get_libdir)" \ + || die "configure failed" + } + python_foreach_impl run_in_build_dir run_configure +} + +src_compile() { + python_foreach_impl run_in_build_dir emake CPPVERBOSE=1 +} + +src_test() { + run_test() { + emake -C tests + } + python_foreach_impl run_in_build_dir run_test +} + +src_install() { + python_foreach_impl run_in_build_dir emake DESTDIR="${D}" install + dodoc README.md History + insinto /usr/share/doc/${PF} + use examples && doins -r examples +} diff --git a/sci-physics/geant-python/metadata.xml b/sci-physics/geant-python/metadata.xml new file mode 100644 index 000000000000..182d59e5d7a2 --- /dev/null +++ b/sci-physics/geant-python/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + Python binding to Geant 4. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/geant/Manifest b/sci-physics/geant/Manifest new file mode 100644 index 000000000000..4ed1693853c4 --- /dev/null +++ b/sci-physics/geant/Manifest @@ -0,0 +1,17 @@ +DIST G4ABLA.3.0.tar.gz 54909 SHA256 ff0b77be6b36204eeeba71099f6b7530edd80b79eb015994535bc4334bc821eb SHA512 905a56c142793de005dc5771509cdd8c4f98e596b95223a1a058cbf614cf48805478839eeec3a29594daf3d89c6b4d72cb33b016a596cdadc4247e452afbd526 WHIRLPOOL daa65dd65160cfa62b1a7b747702cc6cf41230f95b406e2e5e18a743524647842639e8c76906334671d00860b88139f4812c811307803bdc4260468b4c6703cb +DIST G4EMLOW.6.19.tar.gz 14396144 SHA256 8876defe74e4c1e9d6b58b2365a9b468ac8d996fb63fa1c6ba6240e0b185845f SHA512 c877f02a40337333dc6a18c9a86436913d7d090e5cd6f0db861c66190d22046edb5dd7a7cb362183e6fa596c80aded5646b322329d0c12948732fb9e55998527 WHIRLPOOL bd534e91cecbcab46f64eaf1f917931013b84a8347bbe0a94d184afb1467984a0421b3336c3f2dcdda02f5d13b3dcc05a1e82ffd4d5d406baab2e7d2c633a596 +DIST G4NDL.3.14.tar.gz 58794491 SHA256 08ff1d4fb0953f2502d88f76fb9db1d4314c975564731f11c9372d0ea992cafa SHA512 bc0bd6ec22184de370f36f076b2904ee6c7cfad963e8b4dcbfc499eaf7af1440c5c00c2520e6df2b12be256a71f8fe49a8071292a645a88f179d3f5b12348b39 WHIRLPOOL 4d6a20303b658756b27120a2627177c13b47eb3ab8f426d7ef7d158ba2f8d07b728cc31ffe606b6a9767708648fba2916a76c5facdca90fda6d1258ea3fe9a3c +DIST G4NEUTRONXS.1.0.tar.gz 1186619 SHA256 577d28b7faa41caacb001a30384028cd5e3b7018755ab94a427ce0a7feeab365 SHA512 48ba2739233230765a0f5fa492c5190aed17cba631f115dc2a7a6aaf780185b390dc62277abd1ec81fd903003d7c3903857f10add75d89bfbedaffc498555e1c WHIRLPOOL 615b402916ef01a4610c202250a2c106ae0e7a233590fdca70c9694536503b0e24b7ca0200867734938bf000afae4de0658c6448cb57ae762357a9e87ffe6ddc +DIST G4PII.1.2.tar.gz 3387814 SHA256 80e680d7343ed051bcfffd910c682cfd66980cecd1c0bc435f06c6c740a6f99d SHA512 ac02d4af6483665968ce4ad04442513ee32f850c82bbb81c2630a233246005534a9708502b79159e72b872bd44c414d44e4b53aa23d4b4e4d43527343d25ef95 WHIRLPOOL 50c56b1fccb8cf357bb5fe897c3f4b0b11a5548044ea3664992bc7d8006f0a8be4b29f414f9d9411947bb9184d9ac8ca43dea0d79b8dbcd57043e9b99c06cb5d +DIST G4PhotonEvaporation.2.1.tar.gz 7504003 SHA256 08ab657a060518c9b7aab03b17628cbb31585ee9512e0f2033f2fb0d7d9b2bc7 SHA512 ea3a2d1ceb025f595d2cdac1c77215d89c95cd314e6cb44f88f3010bdea3c6397e8310a55a82b43a235301db9a7e3fef754bb93f717e513dca97e6b8a01fdd47 WHIRLPOOL fd77105445137960b607bfe17a1357a7722bbf9af0242db6e7aeb374a779444b838b1bc7549c3a0eaaceaf6702595dc90ccea1bedda74588db8460131acb0860 +DIST G4RadioactiveDecay.3.3.tar.gz 732628 SHA256 7f421d6808422f9186a8a96fc1889a54af03c80a37b9f9d1d51ab359ea0264d1 SHA512 a340618134e6c66ce51f1762a68aebb7b2f2467b7d4f3717e4e2bae1f98ed248dcb62f71ceb9bcfe41282253f7b53dfac8e557007c9414f88750abce3b1402e8 WHIRLPOOL 95eeec8b1c2a8fb2f39fb1903e7479649e49e32421b513224541b36784986a2f932c9c9a08d966d47ab21d9e89288673a7ead78f7fb4d042c32e30d5212485c7 +DIST RealSurface.1.0.tar.gz 1257863 SHA256 3e2d2506600d2780ed903f1f2681962e208039329347c58ba1916740679020b1 SHA512 6457e1931fe1989f822493dbcb3193d97fdb37ecdc8341e953af1fb66816aa589e9d5abaa8a937e4599924c005fc32c763dd0db9af567c4c94aa07fae292be76 WHIRLPOOL 7b36a782278a663866b5676fda2ed5425c61219804aaa3fb6042455f6815e0e16a0f82445947d6e1a9585b9c09fb88fb70230bfd692f3bf10aa4ac8c43c37cae +DIST geant321_3.21.14.dfsg-11.debian.tar.gz 52237 SHA256 62d95386cfe0d83e7d26b5b38be2d249276002441e57c67452930e18a9d177d8 SHA512 a3b6dea7b0df1ecb89bfb974339d3b5aed6815874f453040b37377ab9e9217d6970429d7a346c62f2b289bb8911aafa3569edc7499c13b7b2d3fac23e2a773c9 WHIRLPOOL 7fa57b667f880c877e12e828ca9db5f845d8fbdbfd070da6e30d9450192ce935e339eaf83ffaf3c7426d89bf4608a71e06a518ef9ae95059a2b4a288d7107c96 +DIST geant321_3.21.14.dfsg-8.diff.gz 41909 SHA256 785277dab1e1d3e17d60c85f3826bc67bbd6de7e6a6d40ff7af901371c4d2ce1 SHA512 d69ecb773f06bb1bfea8c336297b693bf1ff62c051408bd64398077b7ccc81a893ad69a29dbe127d78cbe7d6bce125423fc53a68fc719880ee13e03dc4e52662 WHIRLPOOL 9e2fcd4c8f32dba1af6f71e1fd7153c9ab9a26d6200ca71ab2152df0e66d9ed3933d4f27fc44a0fa1f9a8caa375b2f2be0414c681faec3c79545aa733a0ad01f +DIST geant321_3.21.14.dfsg-9.diff.gz 47589 SHA256 419bc2315e2692fe84b353d445cbae7af995d84a6a0290b7f9051ee041243d20 SHA512 fd04f42e5ca8bc7f8015bacf038a78e90ac0ebc95ab85ed65e2010a7c05aed8874057de9f28e11fefee8b6c6b983a5db8dcd8480953c185e6d45d1ca16adba01 WHIRLPOOL 6ca0e08fdf464076dda58cd26dc7c92511d82315ea58979de8201c3f8eeab6860bb136d1ebffcea23b7a53b71b5a6a894495b3153c905aa31f9260517f30e526 +DIST geant321_3.21.14.dfsg.orig.tar.gz 10922928 SHA256 186fe98a08ad1de39f68698a09a46e7c2f14c37b22f8f990257b0bd66215c5b4 SHA512 733a77e529ecfe17c35d1e0bf44cf9062dbd9f2e3880e12cbfabf7372e6c60ea9690df010574094b44aef6fe306dfd85dfd4f42641b8f03efda3938a50313734 WHIRLPOOL fc2b230e1bf2ae1157cf9c92f474ff72fc1f3158e5db5a8f1a7d4f7c983fae9b886dc1aeb148019cb961bc602abc629d75a1aa728d66b10887daa45de040def6 +DIST geant4.10.00.p01.tar.gz 29701289 SHA256 09c431ff3ef81034282c46501cea01046d4a20438c2ea2a7339576e1ecf26ba0 SHA512 d7be39580a8dafa55b1a52b498e4a24312499a33d41954d8684385ce57c903430b2c56386728ad9a70d21af6634fbb8d6b55b2ef9c56b6c9272671e66bf9119d WHIRLPOOL d85a84be7166e949a72d6200f6a00a86bb9611a215270e2021cf5f214e78a9b05095816bb5bb135235bdcccd8949b4460a624fce68764485bbbcd06b5a974889 +DIST geant4.10.00.tar.gz 30780131 SHA256 ffec1714b03748b6d691eb0b91906f4c74422c1ad1f8afa918e03be421af8a17 SHA512 c9288b26df8b858622e728158b687cd7bc257c49f26a21b93d1b9fa4619c22dfea2a7604689118ac493b407888690db42d1ec9c8048aa1f45bf8beeb6a657e87 WHIRLPOOL 20eb2002e867a0fe3dab683820ebeeb5de2140c5cd7c4c57c07b5da2a62900d4ee2bf1f6372e034781ed536001e40a5a79d5654729e45a16995415febfefb26d +DIST geant4.10.01.tar.gz 43759041 SHA256 d37400e96423fedfbf8dbe1f49e2ef0367317c3893ad99f28eed06bf97e1feb7 SHA512 6b9f154f705e7ca4918dea3e2a9ccc0e6fa8806fd4466b4b947f9beec35968640dbe32d383c2a138f15e40b10085c717256cc1604f4d8407e7cb28e5772b52e6 WHIRLPOOL 24316ae5a05026d7e2eff8fad2d628b2198f810d8a82bb934c6c9481961b6b8b3d68393aed785aa8664ea57074e006211df1d9391fbaed154578fe03f3fb6339 +DIST geant4.9.4.p03.tar.gz 25241424 SHA256 5090ca5b506238f16ba2ae2176221a18b6fde06f91180850a109fae1006910c0 SHA512 281b224c126c41cda6b128218dfeb2d77e0e06ca08d2a3dd039be009e3736f3befbf8dd8838543eea197341a5c382543240bf429c38e5e8ca6f0628eb65080b4 WHIRLPOOL 6e9929296624b35cf83a7325d32221f2aaf724b1c27e4f666fea960343c030f08be61723998c5c19cd74a688610a123e3699c907fe5e44f8df2e8058f8691ea5 +DIST geant4.9.6.p02.tar.gz 25480383 SHA256 cf5df83b7e2c99e6729449b32d3ecb0727b4692317426b66fc7fd41951c7351f SHA512 dab5f31568074869adecbbfb8855be0c0a2e92e5ba3119dbeb9cd414878721df3052198a05e5e3c19d0e2942a22602c6618dc0628b05134d3403a50c2bc2032c WHIRLPOOL 8c66d8aa1605a42e6b6f054c32eb49df0bb2afcdf54360ff630908ce7cfc8a7a37b62cdb2a1612af05f1f70a5575c6516aad1f6737a67692449b01e1137b2865 diff --git a/sci-physics/geant/files/geant-4.10.0-TrackingNavigator.patch b/sci-physics/geant/files/geant-4.10.0-TrackingNavigator.patch new file mode 100644 index 000000000000..e3cc8d6594a5 --- /dev/null +++ b/sci-physics/geant/files/geant-4.10.0-TrackingNavigator.patch @@ -0,0 +1,60 @@ +accepted upstream. to be removed in the next minor release. + +https://bugs.gentoo.org/show_bug.cgi?id=496678 +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1537 + +diff -Naur geant4.10.00/source/geometry/navigation/include/G4TransportationManager.hh geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.hh +--- geant4.10.00/source/geometry/navigation/include/G4TransportationManager.hh 2013-12-05 10:28:54.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.hh 2013-12-12 01:40:12.341428809 +0100 +@@ -68,7 +68,7 @@ + // Accessors for field handling + + inline G4Navigator* GetNavigatorForTracking() const; +- inline void SetNavigatorForTracking( G4Navigator* newNavigator ); ++ void SetNavigatorForTracking( G4Navigator* newNavigator ); + // Accessors for the navigator for tracking + + inline void SetWorldForTracking(G4VPhysicalVolume* theWorld); +diff -Naur geant4.10.00/source/geometry/navigation/include/G4TransportationManager.icc geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.icc +--- geant4.10.00/source/geometry/navigation/include/G4TransportationManager.icc 2013-12-05 10:28:54.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.icc 2013-12-12 01:40:12.341428809 +0100 +@@ -59,6 +59,7 @@ + fNavigators[0]->SetWorldVolume(theWorld); + } + ++/* + // ---------------------------------------------------------------------------- + // SetNavigatorForTracking() + // +@@ -70,6 +71,7 @@ + { + fNavigators[0] = newNavigator; + } ++*/ + + // ---------------------------------------------------------------------------- + // GetPropagatorInField() +diff -Naur geant4.10.00/source/geometry/navigation/src/G4TransportationManager.cc geant4.10.00-mod/source/geometry/navigation/src/G4TransportationManager.cc +--- geant4.10.00/source/geometry/navigation/src/G4TransportationManager.cc 2013-12-05 10:28:56.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/src/G4TransportationManager.cc 2013-12-12 01:40:12.345428679 +0100 +@@ -124,6 +124,20 @@ + } + } + ++ ++// ---------------------------------------------------------------------------- ++// SetNavigatorForTracking() ++// ++// Set the active navigator for tracking, always ++// the first in the collection of registered navigators. ++// ++void G4TransportationManager::SetNavigatorForTracking(G4Navigator* newNavigator) ++{ ++ fNavigators[0] = newNavigator; ++ fActiveNavigators[0] = newNavigator; ++ fPropagatorInField->SetNavigatorForPropagating(newNavigator); ++} ++ + // ---------------------------------------------------------------------------- + // ClearNavigators() + // diff --git a/sci-physics/geant/files/geant-4.10.0-no-examples.patch b/sci-physics/geant/files/geant-4.10.0-no-examples.patch new file mode 100644 index 000000000000..99aaca546f49 --- /dev/null +++ b/sci-physics/geant/files/geant-4.10.0-no-examples.patch @@ -0,0 +1,22 @@ +do not install examples automatically, we do this explictly with dodoc. + +Index: geant4.10.00/CMakeLists.txt +=================================================================== +--- geant4.10.00.orig/CMakeLists.txt ++++ geant4.10.00/CMakeLists.txt +@@ -136,15 +136,6 @@ if(GEANT4_BUILD_EXAMPLES) + add_subdirectory(examples) + endif() + +-# - Install example code to datarootdir +-install(DIRECTORY examples +- DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/Geant4-${Geant4_VERSION} +- COMPONENT Examples +- PATTERN "CVS" EXCLUDE +- PATTERN ".svn" EXCLUDE +- ) +- +- + #----------------------------------------------------------------------------- + # Provide packaging with CPack. + include(Geant4CPackBase) diff --git a/sci-physics/geant/files/geant-4.9.4-datadir.patch b/sci-physics/geant/files/geant-4.9.4-datadir.patch new file mode 100644 index 000000000000..c691d90e8ce4 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-datadir.patch @@ -0,0 +1,43 @@ +--- cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake.orig 2011-01-22 00:49:11.096082056 +0000 ++++ cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake 2011-01-22 00:53:04.746078920 +0000 +@@ -74,9 +74,9 @@ + # Construct backward compatible variables + # + set(G4SYSTEM "${GEANT4_SYSTEM}-${GEANT4_COMPILER}") +-set(G4INSTALL ${GEANT4_DATADIR}/geant4-${geant4_VERSION}) ++set(G4INSTALL ${GEANT4_DATADIR}/geant4) + set(G4INCLUDE ${GEANT4_INCLUDEDIR}/geant4) +-set(G4LIB ${GEANT4_LIBDIR}/geant4-${geant4_VERSION}) ++set(G4LIB ${GEANT4_LIBDIR}/geant4) + + message(STATUS "Geant4 backwards compatible variable G4SYSTEM : ${G4SYSTEM}") + message(STATUS "Geant4 backwards compatible variable G4INSTALL: ${G4INSTALL}") +@@ -125,7 +125,7 @@ + # Install targets + # toolchain + install(DIRECTORY config +- DESTINATION ${GEANT4_DATAROOTDIR}/geant4-${geant4_VERSION} ++ DESTINATION ${GEANT4_DATAROOTDIR}/geant4 + FILES_MATCHING PATTERN "*.gmk" + PATTERN "CVS" EXCLUDE + PATTERN "scripts/" EXCLUDE) +@@ -134,16 +134,16 @@ + install(FILES + ${CMAKE_BINARY_DIR}/outputs/runtime/geant4-${geant4_VERSION}.sh + ${CMAKE_BINARY_DIR}/outputs/runtime/geant4-${geant4_VERSION}.csh +- DESTINATION ${GEANT4_DATAROOTDIR}/geant4-${geant4_VERSION}/config ++ DESTINATION ${GEANT4_DATAROOTDIR}/geant4/config + PERMISSIONS + OWNER_READ OWNER_WRITE OWNER_EXECUTE + GROUP_READ GROUP_EXECUTE + WORLD_READ WORLD_EXECUTE) + + # compatibility softlink to library directory +- install(CODE "execute_process(COMMAND \${CMAKE_COMMAND} -E make_directory \$ENV{DESTDIR}${GEANT4_LIBDIR}/geant4-${geant4_VERSION})") ++ install(CODE "execute_process(COMMAND \${CMAKE_COMMAND} -E make_directory \$ENV{DESTDIR}${GEANT4_LIBDIR}/geant4)") + +- install(CODE "execute_process(COMMAND \${CMAKE_COMMAND} -E create_symlink .. ${GEANT4_SYSTEM}-${GEANT4_COMPILER} WORKING_DIRECTORY \$ENV{DESTDIR}${GEANT4_LIBDIR}/geant4-${geant4_VERSION})") ++ install(CODE "execute_process(COMMAND \${CMAKE_COMMAND} -E create_symlink .. ${GEANT4_SYSTEM}-${GEANT4_COMPILER} WORKING_DIRECTORY \$ENV{DESTDIR}${GEANT4_LIBDIR}/geant4)") + + endif() + diff --git a/sci-physics/geant/files/geant-4.9.4-libdir.patch b/sci-physics/geant/files/geant-4.9.4-libdir.patch new file mode 100644 index 000000000000..8934f73acfe9 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-libdir.patch @@ -0,0 +1,35 @@ +--- CMakeLists.txt.orig 2011-01-17 06:25:14.536078940 +0000 ++++ CMakeLists.txt 2011-01-21 23:50:53.406082074 +0000 +@@ -195,7 +195,7 @@ + set(GEANT4_PREFIX ${CMAKE_INSTALL_PREFIX}) + set(GEANT4_EXEC_PREFIX ${GEANT4_PREFIX}) + set(GEANT4_BINDIR ${GEANT4_EXEC_PREFIX}/bin) +-set(GEANT4_LIBDIR ${GEANT4_PREFIX}/lib) ++set(GEANT4_LIBDIR ${GEANT4_PREFIX}/lib${LIB_SUFFIX}) + set(GEANT4_DATAROOTDIR ${GEANT4_PREFIX}/share) + set(GEANT4_DATADIR ${GEANT4_DATAROOTDIR}) + set(GEANT4_INCLUDEDIR ${GEANT4_PREFIX}/include) +--- cmake/Modules/Geant4MacroLibraryTargets.cmake.orig 2011-01-21 23:36:09.356079013 +0000 ++++ cmake/Modules/Geant4MacroLibraryTargets.cmake 2011-01-21 23:49:49.826082339 +0000 +@@ -35,8 +35,8 @@ + # NEEDS WORK TO REMOVE HARDCODED LIB/BIN DIR + install(TARGETS ${G4LIBTARGET_NAME} + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib) ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX}) + endif() + + # +@@ -59,8 +59,8 @@ + + install(TARGETS ${G4LIBTARGET_NAME}-static + RUNTIME DESTINATION bin +- LIBRARY DESTINATION lib +- ARCHIVE DESTINATION lib) ++ LIBRARY DESTINATION lib${LIB_SUFFIX} ++ ARCHIVE DESTINATION lib${LIB_SUFFIX}) + endif() + ENDMACRO() + diff --git a/sci-physics/geant/files/geant-4.9.4-no-benchmarks.patch b/sci-physics/geant/files/geant-4.9.4-no-benchmarks.patch new file mode 100644 index 000000000000..8c9d47707ac4 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-no-benchmarks.patch @@ -0,0 +1,10 @@ +--- source/geometry/CMakeLists.txt.orig 2011-01-17 05:09:38.046080303 +0000 ++++ source/geometry/CMakeLists.txt 2011-01-17 05:09:59.636215548 +0000 +@@ -12,7 +12,6 @@ + # + #------------------------------------------------------------------------------ + +-add_subdirectory(benchmarks) + add_subdirectory(biasing) + add_subdirectory(divisions) + add_subdirectory(magneticfield) diff --git a/sci-physics/geant/files/geant-4.9.4-no-examples.patch b/sci-physics/geant/files/geant-4.9.4-no-examples.patch new file mode 100644 index 000000000000..6db7b3f9017d --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-no-examples.patch @@ -0,0 +1,15 @@ +--- CMakeLists.txt.orig 2011-01-22 01:47:07.000000000 +0000 ++++ CMakeLists.txt 2011-01-22 02:00:58.676084146 +0000 +@@ -209,9 +209,9 @@ + # Install any extra files needed such as documentation and legacy Makefiles + # + # User example code +-install(DIRECTORY examples +- DESTINATION ${GEANT4_DATAROOTDIR}/geant4-${geant4_VERSION} +- PATTERN "CVS" EXCLUDE) ++#install(DIRECTORY examples ++# DESTINATION ${GEANT4_DATAROOTDIR}/geant4-${geant4_VERSION} ++# PATTERN "CVS" EXCLUDE) + + + # diff --git a/sci-physics/geant/files/geant-4.9.4-trajectory.patch b/sci-physics/geant/files/geant-4.9.4-trajectory.patch new file mode 100644 index 000000000000..df45ae234e50 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-trajectory.patch @@ -0,0 +1,11 @@ +--- CMakeLists.txt.orig 2011-04-28 01:19:54.232041312 +0200 ++++ CMakeLists.txt 2011-04-28 01:15:11.434101391 +0200 +@@ -43,6 +43,8 @@ + set(${PROJECT_NAME}_VERSION_MINOR "4") + set(${PROJECT_NAME}_VERSION_PATCH "1") + ++add_definitions(-DG4_STORE_TRAJECTORY) ++ + #------------------------------------------------------------------------------ + # Set up path to internal set of CMake modules. + # diff --git a/sci-physics/geant/files/geant-4.9.4-zlib.patch b/sci-physics/geant/files/geant-4.9.4-zlib.patch new file mode 100644 index 000000000000..f0429695ce38 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-zlib.patch @@ -0,0 +1,35 @@ +force use of system zlib instead of bundled G4zlib +--- source/visualization/HepRep/sources.cmake.orig 2011-12-02 15:07:49.000000000 +0000 ++++ source/visualization/HepRep/sources.cmake 2011-12-18 06:21:22.000000000 +0000 +@@ -91,7 +91,7 @@ + G4specsolids + G4tracking + G4vis_management +- G4zlib ++ ${ZLIB_LIBRARIES} + GLOBAL_DEPENDENCIES + G4digits_hits + G4geometry +@@ -102,7 +102,7 @@ + G4modeling + G4tracking + G4vis_management +- G4zlib ++ ${ZLIB_LIBRARIES} + LINK_LIBRARIES + ) + +--- source/visualization/externals/gl2ps/sources.cmake.orig 2011-12-02 16:07:56.000000000 +0100 ++++ source/visualization/externals/gl2ps/sources.cmake 2012-03-09 14:09:26.965148002 +0100 +@@ -49,9 +49,9 @@ + G4OpenGL2PSAction.cc + gl2ps.cc + GRANULAR_DEPENDENCIES +- G4zlib ++ ${ZLIB_LIBRARIES} + GLOBAL_DEPENDENCIES +- G4zlib ++ ${ZLIB_LIBRARIES} + LINK_LIBRARIES + ${OPENGL_LIBRARIES} + ) diff --git a/sci-physics/geant/geant-3.21.14-r2.ebuild b/sci-physics/geant/geant-3.21.14-r2.ebuild new file mode 100644 index 000000000000..75608a6d437c --- /dev/null +++ b/sci-physics/geant/geant-3.21.14-r2.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 + +inherit eutils fortran-2 + +DEB_PN=geant321 +DEB_PV=${PV}.dfsg +DEB_PR=8 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's detector description and simulation Tool" +HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.diff.gz" + +SLOT="3" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="amd64 x86" +IUSE="" + +RDEPEND=" + dev-lang/cfortran + sci-physics/cernlib + sci-physics/paw + x11-libs/motif:0" +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + cd "${WORKDIR}" + sed -i -e 's:/tmp/dp.*/cern:cern:g' ${DEB_P}-${DEB_PR}.diff || die + epatch ${DEB_P}-${DEB_PR}.diff + cd "${S}" + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed \ + -e 's:/usr/local:/usr:g' \ + -i Makefile || die "sed'ing the Makefile failed" + + einfo "Applying Debian patches" + emake -j1 patch || die "debian patch failed" + + # since we depend on cfortran, do not use the one from cernlib + rm -f src/include/cfortran/cfortran.h +} + +src_compile() { + # create local LaTeX cache directory + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch || die "emake failed" +} + +src_test_() { + LD_LIBRARY_PATH="${S}"/shlib \ + emake -j1 cernlib-test || die "emake test failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" + cd "${S}"/debian + dodoc changelog README.* deadpool.txt NEWS copyright || die "dodoc failed" + newdoc add-ons/README README.add-ons || die "newdoc failed" +} diff --git a/sci-physics/geant/geant-3.21.14-r3.ebuild b/sci-physics/geant/geant-3.21.14-r3.ebuild new file mode 100644 index 000000000000..fba71ad42c31 --- /dev/null +++ b/sci-physics/geant/geant-3.21.14-r3.ebuild @@ -0,0 +1,70 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils fortran-2 + +DEB_PN=geant321 +DEB_PV=${PV}.dfsg +DEB_PR=9 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's detector description and simulation Tool" +HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.diff.gz" + +SLOT="3" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + sci-physics/paw" +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + cd "${WORKDIR}" + sed -i -e 's:/tmp/dp.*/cern:cern:g' ${DEB_P}-${DEB_PR}.diff || die + epatch ${DEB_P}-${DEB_PR}.diff + cd "${S}" + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e 's:/usr/local:/usr:g' \ + Makefile || die "sed'ing the Makefile failed" + + einfo "Applying Debian patches" + emake -j1 patch + + # since we depend on cfortran, do not use the one from cernlib + rm -f src/include/cfortran/cfortran.h +} + +src_compile() { + # create local LaTeX cache directory + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test_() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + emake DESTDIR="${D}" install + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/geant/geant-3.21.14-r4.ebuild b/sci-physics/geant/geant-3.21.14-r4.ebuild new file mode 100644 index 000000000000..8cdb3f6cfb5e --- /dev/null +++ b/sci-physics/geant/geant-3.21.14-r4.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils fortran-2 + +DEB_PN=geant321 +DEB_PV=${PV}.dfsg +DEB_PR=11 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's detector description and simulation Tool" +HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="3" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + sci-physics/paw" +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + sed -i -e 's:/tmp/dp.*/cern:cern:g' debian/patches/* || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e 's:/usr/local:${EROOT}usr:g' \ + Makefile || die "sed'ing the Makefile failed" + + einfo "Applying Debian patches" + emake -j1 patch + + # since we depend on cfortran, do not use the one from cernlib + rm -f src/include/cfortran/cfortran.h +} + +src_compile() { + # create local LaTeX cache directory + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test_() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + emake DESTDIR="${D}" install + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/geant/geant-4.10.00.ebuild b/sci-physics/geant/geant-4.10.00.ebuild new file mode 100644 index 000000000000..d881e8ee0684 --- /dev/null +++ b/sci-physics/geant/geant-4.10.00.ebuild @@ -0,0 +1,89 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-4.10.0-no-examples.patch + "${FILESDIR}"/${PN}-4.10.0-TrackingNavigator.patch # 496678 + ) + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${SPV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.00_p01.ebuild b/sci-physics/geant/geant-4.10.00_p01.ebuild new file mode 100644 index 000000000000..15bf0b709063 --- /dev/null +++ b/sci-physics/geant/geant-4.10.00_p01.ebuild @@ -0,0 +1,86 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( >=sci-physics/geant-data-4.10 ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${SPV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.01.ebuild b/sci-physics/geant/geant-4.10.01.ebuild new file mode 100644 index 000000000000..d7d085097fe7 --- /dev/null +++ b/sci-physics/geant/geant-4.10.01.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND} prefix? ( app-shells/tcsh )" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + use examples || epatch "${FILESDIR}"/${PN}-4.10.0-no-examples.patch +} + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + doins ReleaseNotes/ReleaseNotes${PV1}.${PV2}.${SPV3}.html + [[ -f ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.9.4_p03.ebuild b/sci-physics/geant/geant-4.9.4_p03.ebuild new file mode 100644 index 000000000000..cf4ff5b02846 --- /dev/null +++ b/sci-physics/geant/geant-4.9.4_p03.ebuild @@ -0,0 +1,86 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit cmake-utils eutils fortran-2 versionator + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_COM="http://geant4.cern.ch/support/source" +SRC_URI="${SRC_COM}/${MYP}.tar.gz" +GEANT4_DATA=" + G4NDL.3.14 + G4EMLOW.6.19 + G4RadioactiveDecay.3.3 + G4NEUTRONXS.1.0 + G4PII.1.2 + G4PhotonEvaporation.2.1 + G4ABLA.3.0 + RealSurface.1.0" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} data? ( ${SRC_COM}/${d}.tar.gz )" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="amd64 x86" +IUSE="+data dawn examples gdml geant3 granular qt4 static-libs vrml zlib" + +RDEPEND=" + >=sci-physics/clhep-2.1 + qt4? ( dev-qt/qtgui:4 dev-qt/qtopengl:4 ) + gdml? ( dev-libs/xerces-c ) + geant3? ( sci-physics/geant:3 ) + dawn? ( media-gfx/dawn ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-4.9.4-{zlib,libdir,datadir,trajectory}.patch ) + +src_configure() { + mycmakeargs=( + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_GEANT3TOGEANT4) + $(cmake-utils_use granular GEANT4_BUILD_GRANULAR_BUILD) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + if use data; then + einfo "Installing Geant4 data" + insinto /usr/share/geant4/data + pushd "${WORKDIR}" > /dev/null + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done + popd > /dev/null + fi + + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${PV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "Users need to define the G4WORKDIR variable (\$HOME/geant4 is normally used)." +} diff --git a/sci-physics/geant/geant-4.9.6_p02-r1.ebuild b/sci-physics/geant/geant-4.9.6_p02-r1.ebuild new file mode 100644 index 000000000000..f2008d4162df --- /dev/null +++ b/sci-physics/geant/geant-4.9.6_p02-r1.ebuild @@ -0,0 +1,86 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3 + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${PV3} )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-4.9.4-zlib.patch ) + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${PV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${PV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/metadata.xml b/sci-physics/geant/metadata.xml new file mode 100644 index 000000000000..04025cfa9c28 --- /dev/null +++ b/sci-physics/geant/metadata.xml @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + Geant simulates the passage of subatomic particles through matter, for + instance, particle detectors. Geant 3 simulations are performed by + linking Fortran code supplied by the user with the Geant libraries, + then running the resulting executable. This package includes gxint, + the script used to perform this linking step. + Geant 4 is a complete rewrite in C++ with addition of other modern + features and detectors. +</longdescription> +<use> + <flag name="data">Add a lot of standard physics data files for geant4</flag> + <flag name="dawn">Add support for <pkg>media-gfx/dawn</pkg> (3D postscript + rendering)</flag> + <flag name="gdml">Enable geometry markup language for xml</flag> + <flag name="geant3">Add compatibility for geant321 to geant4</flag> + <flag name="granular">Produce many small libraries instead of global ones</flag> + <flag name="inventor">Add support for Open Inventor SGI toolkit via Coin3D</flag> + <flag name="raytracerx">Enable raytracing for physics events</flag> + <flag name="vrml">Enable output of geant4 in vrml formats</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/h2o-gtk/Manifest b/sci-physics/h2o-gtk/Manifest new file mode 100644 index 000000000000..8ee248239474 --- /dev/null +++ b/sci-physics/h2o-gtk/Manifest @@ -0,0 +1 @@ +DIST h2o-gtk-0.1.tar.bz2 69851 SHA256 ad62d02b37aac565f6cc854e6dc3ed2e31ddc52ed458b4cd9b9c7b276546bb01 SHA512 58f376f53fc108be620d5a792227ee65e7464581c45b68e94d7bb19b90862f3b008b172d3a2f2376fee5f30fd19f6bb0f5ec74cb49f1224245f8c6ae68cc9b04 WHIRLPOOL 3fef2e32c8a622f1688b7cd4d4be5591117dff536c69d0201f40106c9c27ed9174e43931b0373787e93ab2ff220f0c31f4af09dca63a58c9415252c33c14b4f4 diff --git a/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild b/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild new file mode 100644 index 000000000000..fb30e916c6d9 --- /dev/null +++ b/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit autotools-utils + +DESCRIPTION="GTK+ UI for libh2o -- water & steam properties" +HOMEPAGE="https://bitbucket.org/mgorny/h2o-gtk/" +SRC_URI="https://www.bitbucket.org/mgorny/${PN}/downloads/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-cpp/gtkmm + >=sci-libs/libh2oxx-0.2 + sci-libs/plotmm" +DEPEND="${RDEPEND}" diff --git a/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild b/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild new file mode 100644 index 000000000000..71ac7e8de800 --- /dev/null +++ b/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +#if LIVE +AUTOTOOLS_AUTORECONF=yes +EGIT_REPO_URI="http://bitbucket.org/mgorny/${PN}.git" + +inherit git-r3 +#endif + +inherit autotools-utils + +DESCRIPTION="GTK+ UI for libh2o -- water & steam properties" +HOMEPAGE="https://bitbucket.org/mgorny/h2o-gtk/" +SRC_URI="https://www.bitbucket.org/mgorny/${PN}/downloads/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-cpp/gtkmm:2.4= + sci-libs/libh2oxx:0= + sci-libs/plotmm:0=" +DEPEND="${RDEPEND}" + +#if LIVE +KEYWORDS= +SRC_URI= +#endif diff --git a/sci-physics/h2o-gtk/metadata.xml b/sci-physics/h2o-gtk/metadata.xml new file mode 100644 index 000000000000..12729b5c1ae6 --- /dev/null +++ b/sci-physics/h2o-gtk/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>mgorny@gentoo.org</email> + <name>Michał Górny</name> + </maintainer> + <upstream> + <maintainer status="active"> + <email>mgorny@gentoo.org</email> + <name>Michał Górny</name> + </maintainer> + <bugs-to>https://bitbucket.org/mgorny/h2o-gtk/issues/</bugs-to> + <remote-id type="bitbucket">mgorny/h2o-gtk</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/harminv/Manifest b/sci-physics/harminv/Manifest new file mode 100644 index 000000000000..9b56d7c6c959 --- /dev/null +++ b/sci-physics/harminv/Manifest @@ -0,0 +1 @@ +DIST harminv-1.3.1.tar.gz 327832 SHA256 245778c16390c22850de3fb716c3db19514d40415ee3693293bfe59c66536583 SHA512 7dc1c2f658d9722cd64558a702f04409d10b87cb4ff7247c2fbd7f8d9a24387fef1b8ba4b7b183727bef21891c32d27d83aaa3607d063f8ad60702be4bfe5c3c WHIRLPOOL 31e3e0c6a5a01431a2d6daf4fdab362576f2f72617e5d89ccb0f04cde147c59185697bfc40c35ca09168bc4a2281468e41b978b091f2445f6eea203cf8aa7a12 diff --git a/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch b/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch new file mode 100644 index 000000000000..2830d5b586f3 --- /dev/null +++ b/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch @@ -0,0 +1,31 @@ +--- configure.ac.orig 2007-09-27 09:27:28.731439558 +0100 ++++ configure.ac 2007-09-27 09:37:45.755835491 +0100 +@@ -9,7 +9,7 @@ + # *not* the same as the "public" version number. CURRENT:REVISION:AGE + SHARED_VERSION_INFO="2:4:0" + AC_SUBST(SHARED_VERSION_INFO) +-AM_ENABLE_SHARED(no) dnl shared libs cause too many headaches to be default ++AM_ENABLE_SHARED(yes) dnl shared libs cause too many headaches to be default + + ############################################################################## + +@@ -123,9 +123,16 @@ + ########################################################################### + + # Checks for BLAS/LAPACK libraries: +- +-ACX_BLAS([], [AC_MSG_ERROR([BLAS library not found])]) +-ACX_LAPACK([], [AC_MSG_ERROR([LAPACK library not found])]) ++sinclude(acx_blas.m4) ++ACX_BLAS ++if test x"$BLAS_LIBS" = x ; then ++ AC_MSG_ERROR([BLAS library not found]) ++fi ++sinclude(acx_lapack.m4) ++ACX_LAPACK ++if test x"$LAPACK_LIBS" = x ; then ++ AC_MSG_ERROR([LAPACK library not found]) ++fi + + LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" + diff --git a/sci-physics/harminv/harminv-1.3.1.ebuild b/sci-physics/harminv/harminv-1.3.1.ebuild new file mode 100644 index 000000000000..8889bc6c4698 --- /dev/null +++ b/sci-physics/harminv/harminv-1.3.1.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils eutils toolchain-funcs + +DESCRIPTION="Extraction of complex frequencies and amplitudes from time series" +HOMEPAGE="http://ab-initio.mit.edu/harminv/" +SRC_URI="http://ab-initio.mit.edu/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="static-libs" + +RDEPEND="virtual/lapack" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( "${FILESDIR}"/${P}-configure.ac.patch ) + +src_configure() { + local myeconfargs=( + --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" + --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" + ) + autotools-utils_src_configure +} diff --git a/sci-physics/harminv/metadata.xml b/sci-physics/harminv/metadata.xml new file mode 100644 index 000000000000..1d4bdde16401 --- /dev/null +++ b/sci-physics/harminv/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + Harminv is a program to solve the problem of harmonic inversion, + given a discrete-time, finite-length signal that consists of a sum of + finitely-many sinusoids (possibly exponentially decaying) in a given + bandwidth, it determines the frequencies, decay constants, amplitudes, + and phases of those sinusoids. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/hepmc/Manifest b/sci-physics/hepmc/Manifest new file mode 100644 index 000000000000..81e1d6be05d8 --- /dev/null +++ b/sci-physics/hepmc/Manifest @@ -0,0 +1,3 @@ +DIST HepMC-2.06.03.tar.gz 4587543 SHA256 6dc6de2df9e3a30b98d47a1ca0442a9513fcc5df0d6b5590364270903e96a6f3 +DIST HepMC-2.06.08.tar.gz 3863843 SHA256 8be6c1793e0a045f07ddb88bb64b46de7e66a52e75fb72b3f82f9a3e3ba8a8ce SHA512 a2365f67260a394b9e8d7cebdd399d74e78e39aef64e120dedd2fd2ebd10b85519cb87b00f106891ee1a6f01f4c68c829567e5aa1885324be668e5443ab113f6 WHIRLPOOL fc95858b58bbc2d37a2301cc5b62a6c67f25781d0796b04e6bc5ff976ee2d1456afac892dc554274422e62b1b07d727d2263a816579f73230bae64059d6b190d +DIST HepMC-2.06.09.tar.gz 4612637 SHA256 c60724ca9740230825e06c0c36fb2ffe17ff1b1465e8656268a61dffe1611a08 SHA512 1030f31ad9d19d8ae184145a693c4a3092131f485e2ed89598b7172992a825ad9aa46fb44a9199a00c4a6bd7e163daead9452e9bc4fe32cb3b97351cf22906c4 WHIRLPOOL 62b91da92ec30bbc1f5619a87e6172fd563751fe29453ed5bdf31ecae6c5964b59a601b4a52f5c3249cfc20664041ee27bb7114d006dabdf05c5926194890370 diff --git a/sci-physics/hepmc/files/hepmc-2.06.04-gcc46.patch b/sci-physics/hepmc/files/hepmc-2.06.04-gcc46.patch new file mode 100644 index 000000000000..9b19cf70ba9a --- /dev/null +++ b/sci-physics/hepmc/files/hepmc-2.06.04-gcc46.patch @@ -0,0 +1,28 @@ + HepMC/GenEvent.h | 1 + + HepMC/GenVertex.h | 1 + + 2 files changed, 2 insertions(+), 0 deletions(-) + +diff --git a/HepMC/GenEvent.h b/HepMC/GenEvent.h +index 72374cb..d10b9a0 100644 +--- a/HepMC/GenEvent.h ++++ b/HepMC/GenEvent.h +@@ -137,6 +137,7 @@ namespace HepMC { + #include <vector> + #include <algorithm> + #include <iostream> ++#include <cstddef> + + namespace HepMC { + +diff --git a/HepMC/GenVertex.h b/HepMC/GenVertex.h +index 2f3d4de..fc3bf63 100644 +--- a/HepMC/GenVertex.h ++++ b/HepMC/GenVertex.h +@@ -29,6 +29,7 @@ + #include <vector> + #include <set> + #include <algorithm> ++#include <cstddef> + + namespace HepMC { + diff --git a/sci-physics/hepmc/hepmc-2.06.03.ebuild b/sci-physics/hepmc/hepmc-2.06.03.ebuild new file mode 100644 index 000000000000..52fc04ef8e7b --- /dev/null +++ b/sci-physics/hepmc/hepmc-2.06.03.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 + +inherit eutils + +MYP=HepMC-${PV} + +DESCRIPTION="Event Record for Monte Carlo Generators" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepMC/" +SRC_URI="http://lcgapp.cern.ch/project/simu/HepMC/download/${MYP}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gev cm static-libs" + +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen )" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + epatch "${FILESDIR}"/${PN}-2.06.04-gcc46.patch +} +src_configure() { + # use MeV over GeV and mm over cm + local length_conf="MM" + use cm && length_conf="CM" + local momentum_conf="MEV" + use gev && momentum_conf="GEV" + econf \ + --with-length=${length_conf} \ + --with-momentum=${momentum_conf} \ + $(use_enable static-libs static) +} + +src_compile() { + emake || die "emake failed" + if use doc; then + cd doc + doxygen doxygen.conf || die "doc building failed" + fi +} + +src_install() { + emake \ + DESTDIR="${D}" \ + INSTALLDIR=/usr/share/doc/${PF}/examples \ + doc_installdir=/usr/share/doc/${PF} \ + install || die "emake install failed" + + dodoc README AUTHORS ChangeLog + insinto /usr/share/doc/${PF} + if use doc; then + doins -r doc/html doc/*.pdf || die + else + rm -f "${D}"/usr/share/doc/${PF}/*pdf + fi + use examples || rm -rf "${D}"/usr/share/doc/${PF}/examples +} diff --git a/sci-physics/hepmc/hepmc-2.06.08.ebuild b/sci-physics/hepmc/hepmc-2.06.08.ebuild new file mode 100644 index 000000000000..680e47055b4a --- /dev/null +++ b/sci-physics/hepmc/hepmc-2.06.08.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit cmake-utils + +MYP=HepMC-${PV} + +DESCRIPTION="Event Record for Monte Carlo Generators" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepMC/" +SRC_URI="http://lcgapp.cern.ch/project/simu/HepMC/download/${MYP}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cm doc examples gev static-libs test" + +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen dev-tex/floatflt )" + +S="${WORKDIR}/${MYP}" + +DOCS=( ChangeLog AUTHORS ) + +src_prepare() { + sed -i -e '/add_subdirectory(doc)/d' CMakeLists.txt + # CMake doc building broken + # gentoo doc directory + #sed -i \ + # -e "s:share/HepMC/doc:share/doc/${PF}:" \ + # doc/CMakeLists.txt || die + + # gentoo examples directory + sed -i \ + -e "s:share/HepMC:share/doc/${PF}:" \ + $(find examples -name CMakeLists.txt) || die + + # respect user's flags + sed -i \ + -e "s/-O -ansi -pedantic -Wall//g" \ + cmake/Modules/HepMCVariables.cmake || die + + # gentoo libdir love + sed -i \ + -e '/DESTINATION/s/lib/lib${LIB_SUFFIX}/g' \ + {src,fio}/CMakeLists.txt || die + + # remove targets if use flags not set + use examples || sed -i -e '/add_subdirectory(examples)/d' CMakeLists.txt + use test || sed -i -e '/add_subdirectory(test)/d' CMakeLists.txt + if ! use static-libs; then + sed -i \ + -e '/(HepMC\(fio\|\)S/d' \ + -e '/TARGETS/s/HepMC\(fio\|\)S//' \ + {src,fio}/CMakeLists.txt || die + fi +} + +src_configure() { + # use MeV over GeV and mm over cm + local length_conf="MM" + use cm && length_conf="CM" + local momentum_conf="MEV" + use gev && momentum_conf="GEV" + mycmakeargs+=( + -Dlength=${length_conf} + -Dmomentum=${momentum_conf} + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + cd doc + ./buildDoc.sh || die + ./buildDoxygen.sh || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc doc/*.pdf && dohtml -r doc/html/* +} diff --git a/sci-physics/hepmc/hepmc-2.06.09-r1.ebuild b/sci-physics/hepmc/hepmc-2.06.09-r1.ebuild new file mode 100644 index 000000000000..1bc6db438872 --- /dev/null +++ b/sci-physics/hepmc/hepmc-2.06.09-r1.ebuild @@ -0,0 +1,93 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils + +MYP=HepMC-${PV} + +DESCRIPTION="Event Record for Monte Carlo Generators" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepMC/" +SRC_URI="http://lcgapp.cern.ch/project/simu/HepMC/download/${MYP}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cm doc examples gev static-libs test" + +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( + app-doc/doxygen + || ( + dev-texlive/texlive-latex + dev-tex/floatflt + ) + )" + +S="${WORKDIR}/${MYP}" + +DOCS=( ChangeLog AUTHORS ) + +src_prepare() { + sed -i -e '/add_subdirectory(doc)/d' CMakeLists.txt + # CMake doc building broken + # gentoo doc directory + #sed -i \ + # -e "s:share/HepMC/doc:share/doc/${PF}:" \ + # doc/CMakeLists.txt || die + + # gentoo examples directory + sed -i \ + -e "s:share/HepMC:share/doc/${PF}:" \ + $(find examples -name CMakeLists.txt) || die + + # respect user's flags + sed -i \ + -e "s/-O -ansi -pedantic -Wall//g" \ + cmake/Modules/HepMCVariables.cmake || die + + # gentoo libdir love + sed -i \ + -e '/DESTINATION/s/lib/lib${LIB_SUFFIX}/g' \ + {src,fio}/CMakeLists.txt || die + + # remove targets if use flags not set + use examples || sed -i -e '/add_subdirectory(examples)/d' CMakeLists.txt + use test || sed -i -e '/add_subdirectory(test)/d' CMakeLists.txt + if ! use static-libs; then + sed -i \ + -e '/(HepMC\(fio\|\)S/d' \ + -e '/TARGETS/s/HepMC\(fio\|\)S//' \ + {src,fio}/CMakeLists.txt || die + fi +} + +src_configure() { + # use MeV over GeV and mm over cm + local length_conf="MM" + use cm && length_conf="CM" + local momentum_conf="MEV" + use gev && momentum_conf="GEV" + mycmakeargs+=( + -Dlength=${length_conf} + -Dmomentum=${momentum_conf} + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + cd doc + ./buildDoc.sh || die + ./buildDoxygen.sh || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc doc/*.pdf && dohtml -r doc/html/* +} diff --git a/sci-physics/hepmc/metadata.xml b/sci-physics/hepmc/metadata.xml new file mode 100644 index 000000000000..5733312e2b08 --- /dev/null +++ b/sci-physics/hepmc/metadata.xml @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + The HepMC package is an object oriented event record written in C++ + for High Energy Physics Monte Carlo Generators. Many extensions from + HEPEVT, the Fortran HEP standard, are supported: the number of entries + is unlimited, spin density matrices can be stored with each vertex, + flow patterns (such as color) can be stored and traced, integers + representing random number generator states can be stored, and an + arbitrary number of event weights can be included. Particles and + vertices are kept separate in a graph structure, physically similar to + a physics event. The added information supports the modularisation of + event generators. The package has been kept as simple as possible with + minimal internal/external dependencies. Event information is accessed + by means of iterators supplied with the package. + + Reference: M. Dobbs and J.B. Hansen, Comput. Phys. Commun. 134 (2001)41. +</longdescription> +<use> + <flag name='gev'>Build with GeV instead of default MeV for momentum units</flag> + <flag name='cm'>Build with cm instead of default mm for length units</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/heppdt/Manifest b/sci-physics/heppdt/Manifest new file mode 100644 index 000000000000..753312b53a97 --- /dev/null +++ b/sci-physics/heppdt/Manifest @@ -0,0 +1 @@ +DIST HepPDT-3.04.01.tar.gz 1851879 SHA256 2c1c39eb91295d3ded69e0d3f1a38b1cb55bc3f0cde37b725ffd5d722f63c0f6 SHA512 33a93b7d18c0cc64ab13923eb5edca89ed753a7f888a31c1d6a5f84f735e4042e2eaaf04e221d487976603a40fbd84cede4b4dd2bcd2e7479d97cc637dda637b WHIRLPOOL 211e9e8839e508f9929d9f69d9d1d67e633067f5957e5f59f44db6a261d3b515b7d0d9aaf49a9648ee38106ba9b9ea91abdc24820798e678eb79c640456c92ba diff --git a/sci-physics/heppdt/heppdt-3.04.01.ebuild b/sci-physics/heppdt/heppdt-3.04.01.ebuild new file mode 100644 index 000000000000..e2f5d2b715da --- /dev/null +++ b/sci-physics/heppdt/heppdt-3.04.01.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 +inherit autotools + +MYP=HepPDT-${PV} + +DESCRIPTION="Data about each particle from the Review of Particle Properties" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepPDT/" +SRC_URI="${HOMEPAGE}/download/${MYP}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + # respect user flags + sed -i \ + -e '/AC_SUBST(AM_CXXFLAGS)/d' \ + configure.ac || die + # directories + sed -i \ + -e 's:$(prefix)/data:$(datadir)/${PN}:g' \ + data/Makefile.am || die + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_test() { + LD_LIBRARY_PATH="${S}/src/HepPDT:${S}/src/HepPID" \ + emake check MY_LD=-L SHEXT=so +} + +src_install() { + default + use doc && mv "${ED}"usr/doc/* "${ED}"usr/share/doc/${PF}/ + use examples && mv "${ED}"usr/examples "${ED}"usr/share/doc/${PF}/ + rm -r "${ED}"usr/{doc,examples} +} diff --git a/sci-physics/heppdt/metadata.xml b/sci-physics/heppdt/metadata.xml new file mode 100644 index 000000000000..89a8cc95903e --- /dev/null +++ b/sci-physics/heppdt/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + HepPDT contains the fixed data about each particle type. In other + words, it contains the data that can be found in the Review of + Particle Properties. + This data is conceptually split into particle information (e.g. mass) + and decay information. HepPDT provides a simple set of particle data + classes. Particle ID translation methods are in a separate HepPID + library, which is distributed as part of HepPDT. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/herwig/Manifest b/sci-physics/herwig/Manifest new file mode 100644 index 000000000000..64ac73158109 --- /dev/null +++ b/sci-physics/herwig/Manifest @@ -0,0 +1,6 @@ +DIST HERWIG65.INC 32 SHA256 637f8e4c1bd76ec0fd96acc61120d2a41b6b8ca53884a1db30e7f1e35cf52fa4 SHA512 fe63b262458a0e2e9aa5bb76efa2980714e8af96fbd9e226fa33dfda3111e45e6ec033a4c9d21ca339e2336dea3e0f723aa3cff29c4fbbc871a30a9a5690c888 WHIRLPOOL c7459023e7e21a46b7e4bc846f1b6ec3f1358f2efded20411b08c714a98e338c5ad0f2d90b00f4e53967b07a65397d51a562d8334f943efb698d6114469be706 +DIST herwig6510.f 2502723 SHA256 62105cbd5531223ff71c3c0e7215c87fde8202b15b22ba3a0eaa052c1177dc0c SHA512 3176822a3b54d928e66cccaf89ddcfcc1374df54c6159a2557e66d248ec445aa9365f1de8e94af33a7d072a322d78f2684ba09bc0e88a70552b5ef6ecd0a5da0 WHIRLPOOL 53f187eff5c65931f2276ca6e260dbeae7b601aa85be106a9c550be54833f5517b0e421ffef082527b7c19e1955038eaef60dc191a58ff0515e54b83553875dd +DIST herwig6510.inc 14853 SHA256 4373338dc3f4bc1f0376df8238eedaab785e5ef9823621b1f5beb874f478dca0 SHA512 3ad92ea3327506b469cec086547623d4793b9727ab4ff8ef5d329e3843bae3b1fc8af34520ecce45dc08147caf360dd389297a2f765a4a4e389ad74ef9a04aad WHIRLPOOL d5793d19de41690cd8fb4ff658fc1e963dc2f0959b3cde36f9223173f87f0b4f74cf2372f1ad2c93740fd5bf48682971dea9484192cd54039750515cac5c19ce +DIST herwig6521.f 2513511 SHA256 6e47079ee19e5cdc538aa7eae6cd6102ce783bfa501f6356eb34349af33954c0 SHA512 c13bc74132ddb86ca0fea61bc2da21dc6908b96d14a33c378c0f37be0dce201012fdd11681e11fcfb715b345ccd72fb4d166017eaf4e0cd19762acbe6687809a WHIRLPOOL 8baf5931614424d8ce873c31d5d494523fa1e8a783fbbc23ea99035cf5ac5f8be7026436991e078ae8b7334e55a9716da86c10aefce8995f6ea34a03c795b715 +DIST herwig6521.inc 15224 SHA256 f75e4cef481a97f73aa0710789fb3e2bd9b8b4ee26850bf7ecdc8ca6e058476c SHA512 8254dc7a99445a7f4a61760fd8bd4ede5f8b7613e25a9c51155ae614c9cb888c7a66043b3b2ec96b8f515351dab0f697dc14738bcde58fdb345f3aebdac6f1fa WHIRLPOOL a5c45472e2350a2fd3459156c7fc77498624e29807d0008b0393eff3a6c027ff4bdc7d1df1cfc3ccf9c70a8a710e94e208638da10ec8a320470581f5ce67a695 +DIST hw65_manual.pdf 934022 SHA256 a857263bc5ee6ead2c7414ffd9a64d04ab40b6c846399c23001ac8b5211b1ac6 SHA512 68c4407e27abe2d34e239455bd94324d919b712cc8b031faa4635caf4e3eb6ff30d35b4e7f8dc9146c8f54886ff77cc690b296b15805dcd9302ef93e707915ff WHIRLPOOL f51dcb8c7d84d872110ba4e9e698284ab36f8a17f3c2de1578b0ecb3127c3f2481d2c005e623267cdea6785a4f78d4a4dbba938fabbaedea2fc94139da155687 diff --git a/sci-physics/herwig/herwig-6.5.10.ebuild b/sci-physics/herwig/herwig-6.5.10.ebuild new file mode 100644 index 000000000000..4de4376e4b8f --- /dev/null +++ b/sci-physics/herwig/herwig-6.5.10.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 + +inherit versionator autotools fortran-2 + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MY_VER=${PV1}${PV2}${PV3} +MY_P=${PN}${MY_VER} +MY_PINC="$(echo ${PN}|tr '[:lower:]' '[:upper:]')${PV1}${PV2}.INC" + +DESCRIPTION="High Energy Physics Event Generator" +HOMEPAGE="http://www.hep.phy.cam.ac.uk/theory/webber/Herwig/" +SRC_URI=" + ${HOMEPAGE}/${MY_P}.f + ${HOMEPAGE}/${MY_P}.inc + ${HOMEPAGE}/${MY_PINC}" + +LICENSE="all-rights-reserved" +RESTRICT="mirror bindist" + +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="" + +DEPEND="!sci-physics/cernlib-montecarlo[herwig]" +RDEPEND="" + +S="${WORKDIR}" + +src_unpack() { + cp "${DISTDIR}"/* "${S}" +} + +src_prepare() { + sed -i "s/6521/${MY_VER}/" "${MY_PINC}" || die + cat > configure.ac <<-EOF + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + AC_PROG_LIBTOOL + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + cat > Makefile.am <<-EOF + lib_LTLIBRARIES = lib${PN}.la + lib${PN}_la_SOURCES = ${MY_P}.f + pkginclude_HEADERS = \ + ${MY_PINC} \ + ${MY_P}.inc + + EOF + eautoreconf +} + +src_install() { + emake DESTDIR="${D}" install +} diff --git a/sci-physics/herwig/herwig-6.5.21.ebuild b/sci-physics/herwig/herwig-6.5.21.ebuild new file mode 100644 index 000000000000..a61826408465 --- /dev/null +++ b/sci-physics/herwig/herwig-6.5.21.ebuild @@ -0,0 +1,66 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +AUTOTOOLS_AUTORECONF=yes +inherit versionator autotools-utils fortran-2 + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MY_P=${PN}${PV1}${PV2}${PV3} +MY_PINC="$(echo ${PN}|tr '[:lower:]' '[:upper:]')${PV1}${PV2}.INC" + +DESCRIPTION="High Energy Physics Event Generator" +HOMEPAGE="http://www.hep.phy.cam.ac.uk/theory/webber/Herwig/" +SRC_URI=" + ${HOMEPAGE}/${MY_P}.f + ${HOMEPAGE}/${MY_P}.inc + ${HOMEPAGE}/${MY_PINC} + doc? ( ${HOMEPAGE}/hw65_manual.pdf )" + +LICENSE="all-rights-reserved" +RESTRICT="mirror bindist" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +RDEPEND="!sci-physics/cernlib-montecarlo[herwig]" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + cp "${DISTDIR}"/* "${S}" +} + +src_prepare() { + sed -i \ + -e "s/${PN}.*.inc/${MY_P}.inc/" \ + ${MY_PINC} || die + cat > configure.ac <<-EOF + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + AC_PROG_LIBTOOL + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + cat > Makefile.am <<-EOF + lib_LTLIBRARIES = lib${PN}.la + lib${PN}_la_SOURCES = ${MY_P}.f + include_HEADERS = \ + ${MY_PINC} \ + ${MY_P}.inc + + EOF + autotools-utils_src_prepare +} + +src_install() { + autotools-utils_src_install + use doc && dodoc "${DISTDIR}"/hw65_manual.pdf +} diff --git a/sci-physics/herwig/metadata.xml b/sci-physics/herwig/metadata.xml new file mode 100644 index 000000000000..5141b913339a --- /dev/null +++ b/sci-physics/herwig/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + HERWIG is a Monte Carlo package for simulating Hadron Emission + Reactions With Interfering Gluons. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/hoomd-blue/Manifest b/sci-physics/hoomd-blue/Manifest new file mode 100644 index 000000000000..045e7af7caec --- /dev/null +++ b/sci-physics/hoomd-blue/Manifest @@ -0,0 +1 @@ +DIST hoomd-blue-1.0.2.tar.bz2 2755462 SHA256 bca7d377fa152b5f99047c5701db0fecb244f56a7861c35eef0ded6106c520d1 SHA512 f9042e3afacc14e62490802d16a13a77592195befa61837703a39aeedf679e81f31aaafb377384d3b0a2f0e9e40dbce7ddd8b2673086706ba223fe265a2dff27 WHIRLPOOL b72c12a88941899c7a51a0a8e78783bf8c108b85f3969663453b2048a9a9c43ab8d4fd3fbcefa0a6d3add47ac880a2462d92760dc9efc5dd7a822be0252bce19 diff --git a/sci-physics/hoomd-blue/hoomd-blue-1.0.2.ebuild b/sci-physics/hoomd-blue/hoomd-blue-1.0.2.ebuild new file mode 100644 index 000000000000..63ea837ee4af --- /dev/null +++ b/sci-physics/hoomd-blue/hoomd-blue-1.0.2.ebuild @@ -0,0 +1,61 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3,3_4} ) + +inherit cmake-utils cuda python-single-r1 + +DESCRIPTION="a general-purpose particle simulation toolkit" +HOMEPAGE="http://codeblue.umich.edu/hoomd-blue/" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://bitbucket.org/glotzer/${PN}.git" + inherit git-r3 + KEYWORDS= +else + inherit vcs-snapshot + SRC_URI="https://bitbucket.org/glotzer/${PN}/get/v${PV}.tar.bz2 -> ${P}.tar.bz2" + KEYWORDS="~amd64" +fi + +LICENSE="hoomd-blue" +SLOT="0" +IUSE="cuda doc test mpi +zlib" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + mpi? ( virtual/mpi ) + cuda? ( dev-util/nvidia-cuda-sdk ) + zlib? ( sys-libs/zlib ) + dev-libs/boost:=[threads,python,mpi,${PYTHON_USEDEP}]" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen )" + +src_prepare() { + use cuda && cuda_src_prepare + + cmake-utils_src_prepare +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable mpi MPI) + $(cmake-utils_use_enable doc DOXYGEN) + $(cmake-utils_use_enable cuda CUDA) + $(cmake-utils_use_enable zlib ZLIB) + $(cmake-utils_use_build test BUILD_TESTING) + -DPYTHON_SITEDIR=$(python_get_sitedir) + ) + cmake-utils_src_configure +} + +src_install() { + use doc && HTML_DOCS=( "${BUILD_DIR}"/doc/hoomd-*doc* ) + cmake-utils_src_install + + sed -i "s/^python/${EPYTHON}/" "${ED}"/usr/bin/hoomd || die +} diff --git a/sci-physics/hoomd-blue/metadata.xml b/sci-physics/hoomd-blue/metadata.xml new file mode 100644 index 000000000000..8dd7ec69a8a1 --- /dev/null +++ b/sci-physics/hoomd-blue/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-chemistry</herd> + <maintainer> + <email>ottxor@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> + <use> + <flag name="cuda">Enable cuda non-bonded kernels</flag> + </use> +</pkgmetadata> diff --git a/sci-physics/jaxodraw/Manifest b/sci-physics/jaxodraw/Manifest new file mode 100644 index 000000000000..a09735079109 --- /dev/null +++ b/sci-physics/jaxodraw/Manifest @@ -0,0 +1,2 @@ +DIST axodraw4j_2008_11_19.tar.gz 20930 SHA256 60353a25563cb4e987304a7d030bbc7e85c688c881f804cd08e8ba76a370af61 SHA512 81bfcbd1b121104e0058654ac5520d0f570f9a915e9f6dfb8c52c11e9cf92f1e01c800182c2dc34e503a6eceafdff462b4f57dfa5bb5db979101a106c10d88c8 WHIRLPOOL 4614a82192fdcc8606be1d634c3a3634107d268a3246043f68ca8bb9d4d3c07955c04e89b7886a7debdec67896ac286647e6208615cad73d57c8d66b0c6c19fc +DIST jaxodraw-2.0-1_src.tar.gz 3740719 SHA256 e3f456214b9a11dbef030d56a1c6495ea627b0464820792e1998cae9c55554a1 SHA512 ec5866ba03b6f3ecb01ce92f95aa90959153b92eb571f10764d4d10f2fb7a7a0d02a325eb221600526c94faadd53466cf894e4dcba7201e3494555a6330dba02 WHIRLPOOL a146213c3a31fcf64bf0b626dd1ce2996842990196c9708592b461fb33e019f735396153a400d878971bd459ee056462bbb6ab47974f97efcdcee8520455a1f1 diff --git a/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild b/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild new file mode 100644 index 000000000000..678d9cd581cb --- /dev/null +++ b/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="5" + +JAVA_PKG_IUSE="doc source" +WANT_ANT_TASKS="ant-trax" + +inherit java-pkg-2 java-ant-2 versionator eutils + +MY_PV="$(replace_version_separator 2 -)" + +DESCRIPTION="Java program for drawing Feynman diagrams" +HOMEPAGE="http://jaxodraw.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${PN}-${MY_PV}_src.tar.gz + http://downloads.sourceforge.net/jaxodraw/axodraw4j_2008_11_19.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="latex" + +DEPEND=">=virtual/jdk-1.4 + latex? ( dev-texlive/texlive-pstricks:0 )" + +RDEPEND=">=virtual/jre-1.4" + +S="${WORKDIR}/JaxoDraw-${MY_PV}" + +src_install() { + java-pkg_newjar build/${PN}-${MY_PV}.jar ${PN}.jar + + newicon src/site/xdocs/images/favicon.ico jaxodraw.ico + make_desktop_entry jaxodraw JaxoDraw jaxodraw.ico + + use source && java-pkg_dosrc src/main/java/net + + dodoc src/doc/BUGS src/doc/CHANGELOG src/doc/README src/doc/TODO || die + use doc && java-pkg_dojavadoc build/javadoc + + java-pkg_dolauncher "${PN}" + + if use latex; then + dodir /usr/share/texmf/tex/latex/misc/ + insinto /usr/share/texmf/tex/latex/misc/ + doins "${S}/../axodraw4j.sty" + fi +} + +tex_regen() { + if use latex; then + einfo "Regenerating TeX database..." + /usr/bin/mktexlsr /usr/share/texmf /var/spool/texmf > /dev/null + eend $? + fi +} + +pkg_postinst() { + tex_regen +} + +pkg_postrm() { + tex_regen +} diff --git a/sci-physics/jaxodraw/metadata.xml b/sci-physics/jaxodraw/metadata.xml new file mode 100644 index 000000000000..8a6842dea3b6 --- /dev/null +++ b/sci-physics/jaxodraw/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>java</herd> + <upstream> + <remote-id type="sourceforge">jaxodraw</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/lammps/Manifest b/sci-physics/lammps/Manifest new file mode 100644 index 000000000000..67afd43f390d --- /dev/null +++ b/sci-physics/lammps/Manifest @@ -0,0 +1,10 @@ +DIST lammps-10Feb15.tar.gz 62912048 SHA256 59373e9b5592f7b697a144bbce1fb742726e03536b7bb355dac7a9e013ddf9b8 SHA512 a7804377a23f03f338bdaf443439dffcdc52293b4c45e6369b340a1107510fed0b8a198e3b5afcff2e04e109985b52ee62e7b28276697bae37ac6f783d1ab9f2 WHIRLPOOL 09f29cadf8b072d388abe45ec219341d2a14a6c9cc9e4010a0f7945e930e9984738f7837748d117ab95ca76ce0c8d9160fe88dcec17e8d21b81f385dec8f7005 +DIST lammps-15May15.tar.gz 63835027 SHA256 0233ea98c7d77d31bd0a538bb674c0ee8f000f1d0ee1b8c049072873192aa228 SHA512 a23c16b98117590b15ca7662b878fb2f76ec41399c329c98deb48e28a0ffce293443269513a96c2503389894b598787b19dadc210d4b4dbc6a7432caf633e7d1 WHIRLPOOL 4c4edfd772bbf534e42fc43e1feaf3b8f76e74c58ec1e985e3c29ee0d8e64aa8c501b8e45e078643409c320a1d834b0d5eb699e7d1ec29df06be0126d12492f1 +DIST lammps-16Apr15.tar.gz 63842472 SHA256 65aecf6f25a055734ef113890a86ecbf7f8478105238c507e5f9bcbeb657bc99 SHA512 95639145db66e76bd27a865849dc0ad15d3920f7ca9f1fb9a426e457376d0c939c57440e89fa6903d1989ca5e5c6c97d8d283928e1dbf33dd94ba88dbb05a252 WHIRLPOOL 422f6814093f22820cfd8fada1d97735c1a8f0388b34e6bad49e361e411b254ea89e6bf7afa8390c0cba1371a6d038fa84cf93583568c5223e42d95210f13515 +DIST lammps-18Apr15.tar.gz 63883297 SHA256 4ce74978da738383a1d808a37481c3c43d4f8f44d919770b3f2cdd4fcf03345b SHA512 be088ec59b7fe495fff3cdfcc5ccb52d2705eec20deb5c8694a215943786652c9dc22a81ba48324707495c3f56c0c347af964d1952ae077c8db02258cf31387a WHIRLPOOL c90403147cc4eda5b4f581cd1bd18bcc8f45a73b1d0e51dcd64c52fc636116c9d57337b89b5753c86e1bbf386f8a2391a9813a6e32154a819f3e35cfc816b5e2 +DIST lammps-18Jul15.tar.gz 66065642 SHA256 deb6625b7c21cf94fc7ee9aefb2edf55a6c8dc870e919028c9ffa1cd169d57ed SHA512 d26dd0084779e037af35bc26f81cdca5a7617f841860e6eab7d52f6c023d2c001075aad5dc3d656ceb6e92650589acc472fa5c8954fd9ab81ec0b737e377284b WHIRLPOOL 66794b7250cdb077bcbeb2b95a464aecc684f7592d81f3db4a3702195ef1d8404eb4b1f38e6c1dd859a42dd8ca1ebd039cbac4d9fd11be99a376168f2c498cdd +DIST lammps-21Jul15.tar.gz 66715434 SHA256 2e24a7b6131a35ef83cec08f4dc9f7cc5188c59a630ba61f2a8ac3cfbd284ef7 SHA512 cbf39b3559ac60d5ad92299370bf9af76c0bd7fec62dbaa429d5127d561978426d16b03510b815ffeb6b0acdb362523809adf7ac3fbc2fea8cc484010b1ef7bc WHIRLPOOL 41df92b1f5baf52e846032f12c80f813b84fcd1c71f8c7dad5594780da154345d1b1bdea6b68f4c4b71029346d74d4ff3a813f1101437a01be65df7cf6d0d246 +DIST lammps-22Jul15.tar.gz 67275212 SHA256 b75cdf8ead17f20433737c203c8d29c0cc3e157c9b3d175093467873aea0b869 SHA512 f6e5eaf3ca8bcd25a580a4608e0aec0021f2ed5eb23cf9ccd0a707cb8bc320568504ccffc25cccb5acfe2fc3515c58f8afc8936aea63acb3062bdc897a5eb2ee WHIRLPOOL 13c09e1045a0bdabe15e2125ccef0ea622cb12fcce63d8441b7f9843b8f1a3f7aa0c13908a2e215c1fdba8a579a17a5833111b5cf31a2471bf66e781ef281c59 +DIST lammps-24Jul15.tar.gz 67180142 SHA256 bd183f7b073e1ca86656a8f6ea99195123ce3c7829c872ca45216da4132ff96d SHA512 e285a1f326658bd23f32ecf9409d9f0bf16ed635656bbcee0d84da58e1c008363c7815001bcaa5b7701d99b3318a56240b021447e94754607c2ceb178e377122 WHIRLPOOL 003237f8e9a7caec98aa1f8f0c5e03c0cda6d60f20460e32c4eea3c92707e349f4e1a71510f1290b6e6aeac1621951080f904b1bb2224c8eb9e25067206d2b1b +DIST lammps-28Apr15.tar.gz 63883556 SHA256 6e7c32690cf8bb5a4fb147bab6029cc1d03594ec7b3ea3833e7dc89acc596d8a SHA512 414c786e8666cddd31a3200baedc76974371280dc219636914dd7863f03e32e11f637a9c184af78d8d4da22afe4cf734b6a0eb32c78d6f53ee95d796a3e080c0 WHIRLPOOL c57a91f9d5e977d26cdb2076b5bbd2f3b5791396c23b5326f16cc609b9646e80c602a492b312b4e5f78d1d638c4a6b66e9a49b1ced02274ad7202821a2884975 +DIST lammps-30Apr15.tar.gz 63892754 SHA256 d4a193fd5aa9417ec9d15a3be1e2b149302aacf3d9321886a806b0f4ca91611e SHA512 889fc315719e6f50f802b72a8a0c6e6d7eedb84b67e8b39ae9ea93feb2d526914639848cbfbcbb6dd8b8718c3b332f617f001c6ef04fe14d0685106fcac821bd WHIRLPOOL a681662a0c37fcb701ced8f2cd4f085dfd0ff250faac2c62abd07b718e3bf12ddbf366f725fbc21bc4547e6ef3ca3042ee84571a1fa0277a4c3d7d273ccaa099 diff --git a/sci-physics/lammps/files/lammps-python3.patch b/sci-physics/lammps/files/lammps-python3.patch new file mode 100644 index 000000000000..1937881c9339 --- /dev/null +++ b/sci-physics/lammps/files/lammps-python3.patch @@ -0,0 +1,11 @@ +--- lammps-11Apr15/python/lammps.py 2015-03-13 16:06:20.000000000 -0600 ++++ lammps-11Apr15-new/python/lammps.py 2015-04-13 09:40:43.000000000 -0600 +@@ -28,7 +28,7 @@ + except: + type,value,tb = sys.exc_info() + traceback.print_exception(type,value,tb) +- raise OSError,"Could not load LAMMPS dynamic library" ++ raise OSError("Could not load LAMMPS dynamic library") + + # if no ptr provided, create an instance of LAMMPS + # don't know how to pass an MPI communicator from PyPar diff --git a/sci-physics/lammps/files/python-shebang.patch b/sci-physics/lammps/files/python-shebang.patch new file mode 100644 index 000000000000..7dd45797d4ad --- /dev/null +++ b/sci-physics/lammps/files/python-shebang.patch @@ -0,0 +1,7 @@ +--- lammps-25Mar15/python/lammps.py 2015-03-13 16:06:20.000000000 -0600 ++++ lammps-25Mar15-new/python/lammps.py 2015-04-10 15:31:14.000000000 -0600 +@@ -1,3 +1,4 @@ ++#!/usr/bin/env python + # ---------------------------------------------------------------------- + # LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator + # http://lammps.sandia.gov, Sandia National Laboratories diff --git a/sci-physics/lammps/lammps-20150210.ebuild b/sci-physics/lammps/lammps-20150210.ebuild new file mode 100644 index 000000000000..b450fcc7a7e4 --- /dev/null +++ b/sci-physics/lammps/lammps-20150210.ebuild @@ -0,0 +1,206 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils flag-o-matic fortran-2 multilib + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi '' "-I../STUBS") \ + MPI_PATH=$(usex mpi '' '-L../STUBS') \ + MPI_LIB=$(usex mpi '' '-lmpi_stubs') \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die +} + +src_compile() { + # Prepare compiler flags. + append-cxxflags -fPIC -I../../src + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src stubs + + # Build packages + emake -C src yes-asphere + emake -C src yes-body + emake -C src yes-class2 + emake -C src yes-colloid + emake -C src yes-dipole + emake -C src yes-fld + #emake -C src yes-gpu + emake -C src yes-granular + # Need OpenKIM external dependency. + #emake -C src yes-kim + # Need Kokkos external dependency. + #emake -C src yes-kokkos + emake -C src yes-kspace + emake -C src yes-manybody + emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -j1 -C lib/meam -f Makefile.gfortran + emake -C src yes-misc + emake -C src yes-molecule + #emake -C src yes-mpiio + emake -C src yes-opt + emake -C src yes-peri + emake -C src yes-poems + lmp_emake -C lib/poems -f Makefile.g++ + emake -C src yes-reax + lmp_emake -j1 -C lib/reax -f Makefile.gfortran + emake -C src yes-replica + emake -C src yes-rigid + emake -C src yes-shock + emake -C src yes-snap + emake -C src yes-srd + emake -C src yes-voronoi + emake -C src yes-xtc + + emake -C src yes-user-eff + emake -C src yes-user-fep + use mpi && emake -C src yes-user-lb + emake -C src yes-user-phonon + emake -C src yes-user-sph + + if use mpi; then + emake -C src yes-user-atc + lmp_emake -C lib/atc -f Makefile.g++ + fi + + if use static-libs; then + # Build static library. + lmp_emake -C src makelib + lmp_emake -C src -f Makefile.lib serial + fi + + # Build shared library. + lmp_emake -C src makeshlib + lmp_emake -C src -f Makefile.shlib serial + + # Compile main executable. + lmp_emake -C src serial + + # Compile tools. + emake -C tools binary2txt chain micelle2d data2xmovie +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150416.ebuild b/sci-physics/lammps/lammps-20150416.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150416.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150418.ebuild b/sci-physics/lammps/lammps-20150418.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150418.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150428.ebuild b/sci-physics/lammps/lammps-20150428.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150428.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150430.ebuild b/sci-physics/lammps/lammps-20150430.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150430.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150515.ebuild b/sci-physics/lammps/lammps-20150515.ebuild new file mode 100644 index 000000000000..6869d36b96a1 --- /dev/null +++ b/sci-physics/lammps/lammps-20150515.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150718.ebuild b/sci-physics/lammps/lammps-20150718.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150718.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150721.ebuild b/sci-physics/lammps/lammps-20150721.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150721.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150722.ebuild b/sci-physics/lammps/lammps-20150722.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150722.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150724.ebuild b/sci-physics/lammps/lammps-20150724.ebuild new file mode 100644 index 000000000000..020cfbdc4747 --- /dev/null +++ b/sci-physics/lammps/lammps-20150724.ebuild @@ -0,0 +1,267 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/metadata.xml b/sci-physics/lammps/metadata.xml new file mode 100644 index 000000000000..5d67bcd349fa --- /dev/null +++ b/sci-physics/lammps/metadata.xml @@ -0,0 +1,28 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <longdescription lang="en"> + LAMMPS is a classical molecular dynamics code, and an acronym for + Large-scale Atomic/Molecular Massively Parallel Simulator. + + LAMMPS has potentials for soft materials (biomolecules, polymers) and + solid-state materials (metals, semiconductors) and coarse-grained or + mesoscopic systems. It can be used to model atoms or, more generically, + as a parallel particle simulator at the atomic, meso, or continuum + scale. + + LAMMPS runs on single processors or in parallel using message-passing + techniques and a spatial-decomposition of the simulation domain. The + code is designed to be easy to modify or extend with new functionality. + </longdescription> + <use> + <flag name="lammps-memalign">Enables the use of the posix_memalign() + call instead of malloc() when large chunks or memory are allocated + by LAMMPS</flag> + </use> + <herd>sci-physics</herd> + <maintainer> + <email>nicolasbock@gentoo.org</email> + <name>Nicolas Bock</name> + </maintainer> +</pkgmetadata> diff --git a/sci-physics/lhapdf/Manifest b/sci-physics/lhapdf/Manifest new file mode 100644 index 000000000000..1092efd0fa26 --- /dev/null +++ b/sci-physics/lhapdf/Manifest @@ -0,0 +1,8 @@ +DIST LHAPDF-6.1.5.tar.gz 668112 SHA256 ee5dfac1c32a386c966b28cb6a2d51531d4eaf9945c4cb48431dd3fabef83231 SHA512 a5e1ac38f681ea6e4bcef4540f8bb836ebeae809ae160a2069972b8752a334a850ae5ec226b19a09da775a0c790439548b0a8a671c4a3f5852a75bbb0647c473 WHIRLPOOL 793ffee34a7bcba616816f030b9206bf1431fcf2d56daf8125818ebac0667677488529dcb2d0141ee5af48e9cf748171c997c1a5028218b21c59d37d2e9780b5 +DIST MRST2004nlo.LHgrid 288040 SHA256 bc1aa4f26ebcf4a6a1bd6e3ec5fbd5fa3ff378c116247fa27ccd5e76324368ce SHA512 b554454fa494c86a3ae56168c3d74c5e3c3bd80f10b393153c0adfbb39a3f3837ae2db80534d288784409154034187c9c5212dfc9c21ed1bf32ef89b9266e262 WHIRLPOOL b7f1e6115015cf19c092cf367798fe1d4459d0c9fac84e022034c14fd81d27023a35f30e7e727a35e2d8af409f448508744be76f04b441b22466ebd92c600bdf +DIST cteq5l.LHgrid 134797 SHA256 83c92bc90fd6e12be9cd76bc032eca26dcedbe90f0c11aef843bbf54734d5bba SHA512 1ba41fd773104a933af6f37745dcb6f8422e1aece74ba2b1e15a5fb69fdaf694336c0ec1dc6fbc964d2cf3fe363d17ca0c01a6c2ba6def0afa4389cb4083f34b WHIRLPOOL 8a86877fcbae2b45576e3fae08dfd4771c668257893ba2f813c578641dce9800f42bfd57d0d8ac2abc6bf7cd40921020478f1912014a36cfb722ed408ca1430f +DIST cteq61.LHgrid 8946864 SHA256 5df10c695504f02c2c9cc1eda9ca77fa8c276554cf2cda5fbdba764bf8f47691 SHA512 ab35c058f1ece8b428d8664ba2e14068541279328b5eb9e13b020642cc804c21f7412414dd74bb3621a5136bfa7d9a60832604c944d1e3519c5a94d3dce2a063 WHIRLPOOL a3a5ef45ea92e45a5764cbb484523b2eff671ad2c04f25b0b03efd631d367f3bf9784b19eacf927d909301c73a85505f9f87a3fd3f242fcf48d6e611fe510478 +DIST cteq61.LHpdf 11860 SHA256 0dacfd4d5518b2273ba80ae381af7d46eab4784e84312585f5f149f8fce759f0 SHA512 2769bcaed94aa4b47144cd2c3ce76e0b6ab4fa8af278db5cb3b612f2286200352e829eec3971c8da0b78144483f00bbbf1ae2aae8d1e75045d239fab40289bc0 WHIRLPOOL e24427537b81c438552de53d1ef4ca34c425a241e318ffbeff3f5b632793a2cb6ec4d41bde895e56537c9ace520e012008a5370890c6199b1c29bc4ebc0925ae +DIST lhapdf-5.8.4.tar.gz 1165256 SHA256 75a3b44bd4509bec47806fb5ad4baaa6334a2aa8f51cf2f7195d4f08bd353ca2 +DIST wrapheragrid-lite.f 7785 SHA256 50e1c4113f6312b0e6131870e7739a4bfb251e20f4f5cddd69e27ceb26e47a1f +DIST wrapheragrid.f 6931 SHA256 6bd1c4e19de850a2cbe8c548050c772b367f6738f9ba7bb5b6561915833bf5fd diff --git a/sci-physics/lhapdf/lhapdf-5.8.4.ebuild b/sci-physics/lhapdf/lhapdf-5.8.4.ebuild new file mode 100644 index 000000000000..8bef4905647f --- /dev/null +++ b/sci-physics/lhapdf/lhapdf-5.8.4.ebuild @@ -0,0 +1,94 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 + +inherit versionator + +MY_PV=$(get_version_component_range 1-3 ${PV}) +MY_PF=${PN}-${MY_PV} + +DESCRIPTION="Les Houches Parton Density Function unified library" +HOMEPAGE="http://projects.hepforge.org/lhapdf/" +SRC_URI="http://www.hepforge.org/archive/lhapdf/${MY_PF}.tar.gz + http://projects.hepforge.org/${PN}/updates-5.8.3/wrapheragrid.f + http://projects.hepforge.org/${PN}/updates-5.8.3/wrapheragrid-lite.f + test? ( + http://svn.hepforge.org/${PN}/pdfsets/tags/${MY_PV}/cteq61.LHgrid + http://svn.hepforge.org/${PN}/pdfsets/tags/${MY_PV}/MRST2004nlo.LHgrid + http://svn.hepforge.org/${PN}/pdfsets/tags/${MY_PV}/cteq61.LHpdf + octave? ( http://svn.hepforge.org/${PN}/pdfsets/tags/${MY_PV}/cteq5l.LHgrid ) )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="cxx doc examples octave python test" + +RDEPEND="octave? ( sci-mathematics/octave )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex] ) + python? ( dev-lang/swig )" + +S="${WORKDIR}/${MY_PF}" + +src_unpack() { + unpack ${MY_PF}.tar.gz + cp "${DISTDIR}"/wrapheragrid.f "${S}"/src/wrapheragrid.f + cp "${DISTDIR}"/wrapheragrid-lite.f "${S}"/src/wrapheragrid-lite.f +} + +src_prepare() { + # do not create extra latex docs + sed -i \ + -e 's/GENERATE_LATEX.*=YES/GENERATE_LATEX = NO/g' \ + ccwrap/Doxyfile || die +} + +src_configure() { + local myconf="--enable-ccwrap" + ! use octave && ! use cxx && myconf="--disable-ccwrap" + econf \ + $(use_enable cxx old-ccwrap ) \ + $(use_enable octave) \ + $(use_enable python pyext) \ + $(use_enable doc doxygen) \ + ${myconf} +} + +src_test() { + # need to make a bogus link for octave test + ln -s "${DISTDIR}" PDFsets + LHAPATH="${PWD}/PDFsets" \ + LD_LIBRARY_PATH="${PWD}/lib/.libs:${LD_LIBRARY_PATH}" \ + emake check || die "emake check failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" + dodoc README TODO AUTHORS ChangeLog + + # leftover + rm -rf "${D}"/usr/share/${PN}/doc || die + if use doc && use cxx; then + # default doc install buggy + insinto /usr/share/doc/${PF} + doins -r ccwrap/doxy/html || die + fi + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.{f,cc} || die + fi +} + +pkg_postinst() { + elog "To install data files, you have to run as root:" + elog "${ROOT}usr/bin/lhapdf-getdata --dest=${ROOT}usr/share/lhapdf/PDFsets --all" +} + +pkg_postrm() { + if [ -d "${ROOT}usr/share/lhapdf" ]; then + ewarn "The data directory has not been removed, probably because" + ewarn "you still have installed data files." + fi +} diff --git a/sci-physics/lhapdf/lhapdf-6.1.5.ebuild b/sci-physics/lhapdf/lhapdf-6.1.5.ebuild new file mode 100644 index 000000000000..e27e87386fb0 --- /dev/null +++ b/sci-physics/lhapdf/lhapdf-6.1.5.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +AUTOTOOLS_IN_SOURCE_BUILD=yes +PYTHON_COMPAT=( python{2_7,3_3,3_4} ) + +inherit versionator autotools-utils distutils-r1 + +MY_PV=$(get_version_component_range 1-3 ${PV}) +MY_PF=LHAPDF-${MY_PV} + +DESCRIPTION="Les Houches Parton Density Function unified library" +HOMEPAGE="http://lhapdf.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/lhapdf/${MY_PF}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc examples python static-libs" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RDEPEND=" + dev-libs/boost:0= + python? ( ${PYTHON_DEPS} )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex] )" + +S="${WORKDIR}/${MY_PF}" + +src_configure() { + autotools-utils_src_configure $(use_enable python) + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_prepare + fi +} + +src_compile() { + autotools-utils_src_compile all $(use doc && echo doxy) + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_compile + fi +} + +src_test() { + autotools-utils_src_compile -C tests +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r doc/doxygen/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.cc + fi + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_install + fi +} + +pkg_postinst() { + elog "Download data files from:" + elog "http://www.hepforge.org/archive/${PN}/pdfsets/$(get_version_component_range 1-2 ${PV})" + elog "and untar them into ${EROOT%/}/usr/share/LHAPDF" +} diff --git a/sci-physics/lhapdf/metadata.xml b/sci-physics/lhapdf/metadata.xml new file mode 100644 index 000000000000..663117301f42 --- /dev/null +++ b/sci-physics/lhapdf/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + Les Houches Parton Density Function (LHAPDF) + provides a unified and easy to use interface to modern PDF + sets. It is designed to work not only with individual PDF sets but + also with the more recent multiple "error" sets. It can be viewed as + the successor to PDFLIB, incorporating many of the older sets found in + the latter, including pion and photon PDFs. In LHAPDF the computer + code and input parameters/grids are separated thus allowing more easy + updating and no limit to the expansion possibilities. The code and + data sets can be downloaded together or individually as desired. From + version 4.1 onwards a configuration script facilitates the + installation of LHAPDF. +</longdescription> +<use> + <flag name='octave'>Add bindings for <pkg>sci-mathematics/octave</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-physics/lightspeed/Manifest b/sci-physics/lightspeed/Manifest new file mode 100644 index 000000000000..9c2d5531dc78 --- /dev/null +++ b/sci-physics/lightspeed/Manifest @@ -0,0 +1,3 @@ +DIST lightspeed-1.2a.tar.gz 163764 SHA256 a8752acce625436b699b4d3c1ab479bd4116673784f17e527a3e37374abc4f4b SHA512 d936e54fcf3f5a59b9d4f0ce7777755d8262a71634f9fca0f5f312a2fbf9f5b65d3fe6628d1547cf88ac8a02243712e838e7d84c5e61a6a318484545896b46ef WHIRLPOOL 0dd6142a32b8c16508bb0fe333683ed8c82c1f461d92f1959e466c3098b56b9f4fa07f285ea754a97b149b60736cb84ff4dde61dd375318f6aa8ec2d0cf17b20 +DIST lightspeed_1.2a-7.diff.gz 379281 SHA256 1cbc562d1ad10afb9598510537cd64fdbbb1f9bd12ac27c5180a668bbc548a58 SHA512 f0a9999750470d45f9b7b6f3339fff5d75b461f8f937e16e784905e85a29fc5587b6b203f151f0a8075ea39b255f6d48c4ca78c48703f4ab3cd2d18af7a4df50 WHIRLPOOL 3cc70f8b1f27229fd510e58b3780f4904d521f192dd9cda7f27ab7feaf70aea0684661d1addcd1482ac36a20fd697f8ce55d81cf1f1d199552a657e35a09046f +DIST objects-1.tar.gz 767805 SHA256 dd82324796b9f114c652220d069b131321a129ea41ef99cc0b8cbdf8c666bf5b SHA512 cb8c2d5c323b92b87dfe2bfa8f7f37c46b381c4611d5ca2f645a16943339b90850615647f6edc21ae28a28792b0f071e8cac9779dbfdbf6bf928498cdd451231 WHIRLPOOL 07853e37aa761beb5a94fbdce11baeb78ef9c652dbf32c85129cf75af5fe4dae8608fc51f2ccdf0ae612e904c36713ad9a304234234a8e274ae43d09fe068884 diff --git a/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch b/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch new file mode 100644 index 000000000000..c6b2f9fda711 --- /dev/null +++ b/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch @@ -0,0 +1,16 @@ +diff --git a/configure.in b/configure.in +index 1cfbcba..5363c05 100644 +--- a/configure.in ++++ b/configure.in +@@ -54,9 +54,8 @@ if test "x$with_gtk" != "x1" -a "$gtkmorph_gtk" = "" ; then + AC_MSG_NOTICE([ Testing for GTK 2 skipped]) + fi + if test "x$with_gtk" != "x2" -a "$version_of_gtk" = "" ; then +- AM_PATH_GTK(1.0.1, , [AC_MSG_ERROR([Cannot find proper GTK+ version])]) +- version_of_gtk=gtk1 +- AC_DEFINE(HAVE_GTK1,1,"compiled with GTK 1 and GtkGLArea ") ++ AC_MSG_ERROR([Cannot find proper GTK+ version]) ++ exit 1 + fi + + AM_CONDITIONAL(COND_GTK1, test "$version_of_gtk" = "gtk1" ) diff --git a/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch b/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch new file mode 100644 index 000000000000..c3909a7b4dac --- /dev/null +++ b/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch @@ -0,0 +1,19 @@ +--- src/snapshot.c ++++ src/snapshot.c +@@ -26,6 +26,7 @@ + #include "lightspeed.h" + + #ifdef HAVE_LIBPNG ++#include <zlib.h> + #include <png.h> + static int write_png( int message, const void *data ); + #endif +@@ -305,7 +306,7 @@ + return -1; + png_write_s = png_create_write_struct( PNG_LIBPNG_VER_STRING, NULL, NULL, NULL ); + png_info_s = png_create_info_struct( png_write_s ); +- if (setjmp( png_write_s->jmpbuf )) { ++ if (setjmp( png_jmpbuf( png_write_s ) )) { + /* Error writing file */ + png_destroy_write_struct( &png_write_s, &png_info_s ); + fclose( png_fp ); diff --git a/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild b/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild new file mode 100644 index 000000000000..44edb8d913a8 --- /dev/null +++ b/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild @@ -0,0 +1,81 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit autotools eutils + +DEB_PATCH="${PN}_${PV}-7" +DESCRIPTION="OpenGL interactive relativistic simulator" +HOMEPAGE="http://lightspeed.sourceforge.net/" +SRC_URI=" + mirror://sourceforge/${PN}/${P}.tar.gz + mirror://sourceforge/${PN}/objects-1.tar.gz + mirror://debian/pool/main/${PN:0:1}/${PN}/${DEB_PATCH}.diff.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" + +IUSE="nls truetype" +LANGS="es" +for i in ${LANGS}; do + IUSE="${IUSE} linguas_${i}" +done + +RDEPEND=" + media-libs/libpng + media-libs/tiff + virtual/opengl + x11-libs/gtkglext + x11-libs/gtkglarea:2 + x11-libs/gtk+:2 + x11-libs/libXmu + truetype? ( media-libs/ftgl )" + +DEPEND="${RDEPEND} + virtual/pkgconfig" + +S2="${WORKDIR}/objects" + +src_prepare() { + epatch "${WORKDIR}/${DEB_PATCH}.diff" + epatch \ + "${FILESDIR}"/${P}-autoconf.patch \ + "${FILESDIR}"/${P}-libpng15.patch + eautoreconf +} + +src_configure() { + econf \ + --with-gtk=2 \ + $(use_enable nls) \ + $(use_with truetype ftgl) +} + +src_compile() { + emake + local i + for i in ${LANGS}; do + use linguas_${i} && emake ${i}.gmo + done +} + +src_install() { + default + newicon src/icon.xpm lightspeed.xpm + make_desktop_entry ${PN} "Light Speed! Relativistic Simulator" + newdoc debian/changelog ChangeLog.Debian + cd ${S2} + newdoc README objects-README + insinto /usr/share/${PN} + doins *.3ds *.lwo +} + +pkg_postinst() { + elog + elog "Some 3d models have been placed in /usr/share/${PN}" + elog "You can load them in Light Speed! from the File menu." + elog +} diff --git a/sci-physics/lightspeed/metadata.xml b/sci-physics/lightspeed/metadata.xml new file mode 100644 index 000000000000..bbdc6a250095 --- /dev/null +++ b/sci-physics/lightspeed/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + Light Speed! is an OpenGL-based program developed to illustrate the + effects of special relativity on the appearance of moving + objects. The moving object is, by default, a geometric lattice. 3D + Studio and LightWave 3D objects may be imported as well. Best of + all, the simulator is completely interactive, rendering the exotic + distortions in real-time. +</longdescription> + <upstream> + <remote-id type="sourceforge">lightspeed</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/meep/Manifest b/sci-physics/meep/Manifest new file mode 100644 index 000000000000..c31932049131 --- /dev/null +++ b/sci-physics/meep/Manifest @@ -0,0 +1,2 @@ +DIST meep-1.1.1.tar.gz 751244 SHA256 7a97b5555da1f9ea2ec6eed5c45bd97bcd6ddbd54bdfc181f46c696dffc169f2 SHA512 cc081b7c63dc4ecda600dd5f55b3833f25fcfd1c1fded0af3a9bbd0471e36f0e54045a78ea52c99ca8aa3beccbe8e6e8afccbbadf869cd5b926a765b0c32618a WHIRLPOOL 2a894c63cb5bf4e907cc3da90ac3c5ff53f181b1e2d9695876806b3b67cb0da5fbc239033ffc33f84d1510bb5851910b33ead9b49dc769ce39e6fd420d990f78 +DIST meep-1.2.tar.gz 807522 SHA256 2734737b8053a45942bc1a50933d63b6fd18c7dc3cf33e92e0815ece93138942 SHA512 f7b25183491881d59653ba5bc727a2b4f5deb126d515ff7ed5df7a1f9d31a5161b720348e65f45b9c76004be44714c606c4b8063f855b5cc97ff7757bd5a5656 WHIRLPOOL 54940326d8f304a57c2dd69c411ef394f44cd2c57367f16a4a0dd6d3fa6df0ee01e0b0081048b4ec3fd8eff404e76507d6dea5db1b9b975096a40d34d1595080 diff --git a/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch b/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch new file mode 100644 index 000000000000..8c287f208d65 --- /dev/null +++ b/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch @@ -0,0 +1,16 @@ +diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac +--- meep-1.2.orig/configure.ac 2012-08-14 21:52:13.000000000 +0100 ++++ meep-1.2/configure.ac 2012-08-14 22:00:55.000000000 +0100 +@@ -161,8 +161,10 @@ + + ########################################################################### + # MPB library +- +-AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no]) ++AC_ARG_WITH(mpb, [AC_HELP_STRING([--without-mpb],[do not build with mpb])], ok=$withval, ok=yes) ++if test "$ok" = "yes"; then ++ AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no]) ++fi + + if test $have_mpb = maybe; then + if test "x$acx_lapack_ok" = x -a "$have_harminv" = xno; then diff --git a/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch b/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch new file mode 100644 index 000000000000..d7b2f72eaffc --- /dev/null +++ b/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch @@ -0,0 +1,12 @@ +diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac +--- meep-1.2.orig/configure.ac 2012-08-14 21:52:13.000000000 +0100 ++++ meep-1.2/configure.ac 2012-08-14 21:54:49.000000000 +0100 +@@ -224,7 +224,7 @@ + ############################################################################## + # Libraries and flags (other than -lmeep) required to link Meep: + +-MEEPLIBS="$LDFLAGS $LIBS" ++MEEPLIBS="$LIBS" + AC_SUBST(MEEPLIBS) + + ############################################################################## diff --git a/sci-physics/meep/meep-1.1.1.ebuild b/sci-physics/meep/meep-1.1.1.ebuild new file mode 100644 index 000000000000..4edfc1f664e7 --- /dev/null +++ b/sci-physics/meep/meep-1.1.1.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=2 +inherit eutils + +DESCRIPTION="Simulation software to model electromagnetic systems" +HOMEPAGE="http://ab-initio.mit.edu/meep/" +SRC_URI="http://ab-initio.mit.edu/meep/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="examples hdf5 guile mpi" + +DEPEND="sci-libs/fftw + sci-libs/gsl + sci-physics/harminv + guile? ( >=sci-libs/libctl-3.0.3 ) + hdf5? ( sci-libs/hdf5 ) + mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +src_configure() { + econf \ + --enable-shared \ + $(use_with mpi) \ + $(use_with hdf5) \ + $(use_with guile libctl) +} + +src_test() { + # bug #423247 + emake pml -C tests CXXFLAGS=-O0 || die + emake check || die +} + +src_install() { + emake install DESTDIR="${D}" || die "emake install failed" + dodoc AUTHORS NEWS README TODO + insinto /usr/share/doc/${PF} + if use examples; then + doins -r examples || die "install examples failed" + fi +} diff --git a/sci-physics/meep/meep-1.2.ebuild b/sci-physics/meep/meep-1.2.ebuild new file mode 100644 index 000000000000..b4b57f0a2930 --- /dev/null +++ b/sci-physics/meep/meep-1.2.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=1 +inherit autotools-utils + +DESCRIPTION="Simulation software to model electromagnetic systems" +HOMEPAGE="http://ab-initio.mit.edu/meep/" +SRC_URI="http://ab-initio.mit.edu/meep/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples hdf5 guile mpb mpi" + +RDEPEND=" + sci-libs/fftw + sci-libs/gsl + sci-physics/harminv + guile? ( >=sci-libs/libctl-3.2 ) + hdf5? ( sci-libs/hdf5 ) + mpb? ( sci-physics/mpb ) + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( + "${FILESDIR}"/${P}-pc-no-ldflags.patch + "${FILESDIR}"/${P}-no-auto-mpb.patch +) + +src_configure() { + local myeconfargs=( + $(use_with mpb) + $(use_with mpi) + $(use_with hdf5) + $(use_with guile libctl) + ) + autotools-utils_src_configure +} + +src_test() { + # pml test buggy with optimization on + # http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/4579 + pushd ${AUTOTOOLS_BUILD_DIR} > /dev/null + emake -C tests pml CXXFLAGS="-O0" + emake check + popd > /dev/null +} + +src_install() { + autotools-utils_src_install + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r examples/*.ctl + fi +} diff --git a/sci-physics/meep/metadata.xml b/sci-physics/meep/metadata.xml new file mode 100644 index 000000000000..17865fb063ef --- /dev/null +++ b/sci-physics/meep/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + The MIT Electromagnetic Equation Propagation (MEEP) is a + finite-difference time-domain (FDTD) simulation software package + developed at MIT to model electromagnetic systems, along with the MPB + eigenmode package. +</longdescription> +<use> + <flag name='mpb'>Enable build against <pkg>sci-physics/mpb</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-physics/metadata.xml b/sci-physics/metadata.xml new file mode 100644 index 000000000000..2ad6cdefcdbf --- /dev/null +++ b/sci-physics/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<catmetadata> + <longdescription lang="en"> + The sci-physics category contains physics related software. + </longdescription> + <longdescription lang="pt"> + A categoria sci-physics contém programas relacionados com + física. + </longdescription> + <longdescription lang="es"> + La categoría sci-physics contiene software relacionado con + la física. + </longdescription> +</catmetadata> + diff --git a/sci-physics/mpb/Manifest b/sci-physics/mpb/Manifest new file mode 100644 index 000000000000..5f52a99d8cbd --- /dev/null +++ b/sci-physics/mpb/Manifest @@ -0,0 +1 @@ +DIST mpb-1.4.2.tar.gz 686488 SHA256 e44c0720a5969a879fb93e48f6098d4d87e2f99d6ef49711d822f4c2249ccd61 SHA512 4151612b8868b324353556f46aeccdce2726d8938ab8cf7404c36da68e90ec0de1799d4e23b2d5bbe5853d0c0329ba0ee1a2fdb2745aed43c34759084b62fbac WHIRLPOOL e0b256c06bdd2c7479723c0db6c434e645b6fbf1a052ebc2971203902f9bf09336b4bf69ec8c8f1cd9b4952672a28290b4ff66c44f56feae135d9cbf07284473 diff --git a/sci-physics/mpb/files/mpb-1.4.2-autotools.patch b/sci-physics/mpb/files/mpb-1.4.2-autotools.patch new file mode 100644 index 000000000000..b6faf07d2bcf --- /dev/null +++ b/sci-physics/mpb/files/mpb-1.4.2-autotools.patch @@ -0,0 +1,262 @@ +diff -Nur mpb-1.4.2.orig/configure.ac mpb-1.4.2/configure.ac +--- mpb-1.4.2.orig/configure.ac 2003-03-04 02:38:41.000000000 +0000 ++++ mpb-1.4.2/configure.ac 2008-11-25 17:31:12.000000000 +0000 +@@ -6,15 +6,8 @@ + MPB_VERSION=1.4.2 + AC_SUBST(MPB_VERSION) + +-AC_MSG_CHECKING([for vendor f77 to be used instead of g77]) +-AC_MSG_RESULT() +-AC_CHECK_PROGS(F77, f77 xlf77 cf77 fort77 f90 xlf90) + AC_PROG_F77 +- +-# Get C compiler. +-AC_MSG_CHECKING([for vendor cc to be used instead of gcc]) +-AC_MSG_RESULT() +-AC_CHECK_PROGS(CC, cc xlc) # prefer vendor cc, to stay in sync with Fortran ++AC_F77_WRAPPERS + AC_PROG_CC + + # Checks for programs. +@@ -79,12 +72,6 @@ + echo "*********************** HERMITIAN EPS. ***********************" + fi + +-# Add lots of compiler warnings to check for if we are using gcc: +-# (The variable $GCC is set to "yes" by AC_PROG_CC if we are using gcc.) +-if test "$GCC" = "yes"; then +- CFLAGS="$CFLAGS -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic" +-fi +- + ############################################################################## + # Checks for libraries: + ############################################################################## +@@ -203,6 +190,10 @@ + # how to run mpb-mpi in general + fi + ++# Checks for header files. ++AC_HEADER_STDC ++AC_CHECK_HEADERS(unistd.h getopt.h) ++ + ############################################################################## + # Check for HDF5 library + AC_ARG_WITH(hdf5, [AC_HELP_STRING([--without-hdf5],[do not use HDF5 output])], ok=$withval, ok=yes) +@@ -349,9 +340,7 @@ + ]], [AC_MSG_RESULT(ok)], [AC_MSG_ERROR([libctl version ${LIBCTL_MAJOR}.${LIBCTL_MINOR}.${LIBCTL_BUGFIX} or later is required])]) + + ############################################################################## +-# Checks for header files. +-AC_HEADER_STDC +-AC_CHECK_HEADERS(unistd.h getopt.h) ++ + + # Checks for typedefs, structures, and compiler characteristics. + AC_C_CONST +diff -Nur mpb-1.4.2.orig/Makefile.in mpb-1.4.2/Makefile.in +--- mpb-1.4.2.orig/Makefile.in 2002-01-18 22:52:41.000000000 +0000 ++++ mpb-1.4.2/Makefile.in 2008-11-25 17:31:12.000000000 +0000 +@@ -2,6 +2,9 @@ + + SHELL = @SHELL@ + ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ + CC = @CC@ + CFLAGS = @CFLAGS@ + CPPFLAGS = @CPPFLAGS@ +diff -Nur mpb-1.4.2.orig/mpb-ctl/Makefile.in mpb-1.4.2/mpb-ctl/Makefile.in +--- mpb-1.4.2.orig/mpb-ctl/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/mpb-ctl/Makefile.in 2008-11-25 18:23:20.000000000 +0000 +@@ -13,6 +13,12 @@ + + SHELL = @SHELL@ + ++mandir = @mandir@ ++ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ + ############################################################################## + + # Makefile.in for programs using libctl (assumes that autoconf is +@@ -37,8 +43,8 @@ + ../src/util/util.a + + MY_LDFLAGS = # extra -L flags go here +-MY_CPPFLAGS = -I. -I../src/util -I../src/matrices -I../src/matrixio \ +- -I../src/maxwell ++MY_CPPFLAGS = -I$(srcdir) -I$(top_srcdir)/src/util -I$(top_srcdir)/src/matrices -I$(top_srcdir)/src/matrixio \ ++ -I$(top_srcdir)/src/maxwell + MY_DEFS = -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 + + # The following variables should be detected and set by autoconf: +@@ -134,11 +140,11 @@ + + install-mpb: $(PROGRAM_NAME) + $(INSTALL) -d $(prefix)/bin +- $(INSTALL) -m 0755 -s .$(PROGRAM_NAME) $(prefix)/bin/`echo $(PROGRAM_NAME)|sed '$(transform)'` ++ $(INSTALL) -m 0755 .$(PROGRAM_NAME) $(prefix)/bin/`echo $(PROGRAM_NAME)|sed '$(transform)'` + $(INSTALL) -d $(prefix)/share/libctl/specs + $(INSTALL) -m 0644 $(SPECIFICATION_FILE) $(prefix)/share/libctl/specs + $(INSTALL) -d $(mandir)/man1 +- $(INSTALL) -m 0644 $(PROGRAM_NAME).1 $(mandir)/man1 ++ $(INSTALL) -m 0644 $(srcdir)/$(PROGRAM_NAME).1 $(mandir)/man1 + + mpb-split-tmp: + rm -f mpb-split-tmp +@@ -149,7 +155,7 @@ + mpb_name=`echo mpb | sed '$(transform)'`; \ + $(INSTALL) -m 0755 mpb-split-tmp $(prefix)/bin/$${mpb_name}-split + $(INSTALL) -d $(mandir)/man1 +- $(INSTALL) -m 0644 mpb-split.1 $(mandir)/man1 ++ $(INSTALL) -m 0644 $(srcdir)/mpb-split.1 $(mandir)/man1 + + clean: + rm -f $(ALL_OBJECTS) ctl-io.c ctl-io.h main.c geom.c \ +diff -Nur mpb-1.4.2.orig/src/matrices/Makefile.in mpb-1.4.2/src/matrices/Makefile.in +--- mpb-1.4.2.orig/src/matrices/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/src/matrices/Makefile.in 2008-11-25 17:31:12.000000000 +0000 +@@ -2,9 +2,11 @@ + + SHELL = @SHELL@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I../util -I. @CPPFLAGS@ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ ++CPPFLAGS = -I$(top_srcdir)/src/util -I$(srcdir) -I. @CPPFLAGS@ + DEFS = @DEFS@ + LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ +diff -Nur mpb-1.4.2.orig/src/matrixio/Makefile.in mpb-1.4.2/src/matrixio/Makefile.in +--- mpb-1.4.2.orig/src/matrixio/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/src/matrixio/Makefile.in 2008-11-25 17:31:12.000000000 +0000 +@@ -2,9 +2,11 @@ + + SHELL = @SHELL@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I../util -I../matrices -I. @CPPFLAGS@ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ ++CPPFLAGS = -I$(top_srcdir)/src/util -I$(top_srcdir)/src/matrices -I$(srcdir) -I. @CPPFLAGS@ + DEFS = @DEFS@ + LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ +diff -Nur mpb-1.4.2.orig/src/maxwell/Makefile.in mpb-1.4.2/src/maxwell/Makefile.in +--- mpb-1.4.2.orig/src/maxwell/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/src/maxwell/Makefile.in 2008-11-25 17:31:12.000000000 +0000 +@@ -2,9 +2,11 @@ + + SHELL = @SHELL@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I../util -I../matrices @CPPFLAGS@ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ ++CPPFLAGS = -I$(top_srcdir)/src/util -I$(top_srcdir)/src/matrices -I. @CPPFLAGS@ + DEFS = @DEFS@ + LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ +diff -Nur mpb-1.4.2.orig/src/util/Makefile.in mpb-1.4.2/src/util/Makefile.in +--- mpb-1.4.2.orig/src/util/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/src/util/Makefile.in 2008-11-25 17:31:12.000000000 +0000 +@@ -2,9 +2,11 @@ + + SHELL = @SHELL@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I. @CPPFLAGS@ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ ++CPPFLAGS = -I$(top_srcdir) -I. @CPPFLAGS@ + DEFS = @DEFS@ + LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ +diff -Nur mpb-1.4.2.orig/tests/Makefile.in mpb-1.4.2/tests/Makefile.in +--- mpb-1.4.2.orig/tests/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/tests/Makefile.in 2008-11-25 17:31:58.000000000 +0000 +@@ -2,12 +2,14 @@ + + SHELL = @SHELL@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I../src/util -I../src/matrices -I../src/maxwell @CPPFLAGS@ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ ++ ++CPPFLAGS = -I$(top_srcdir)/src/util -I$(top_srcdir)/src/matrices -I$(top_srcdir)/src/maxwell -I. @CPPFLAGS@ + DEFS = @DEFS@ +-LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ ++LDFLAGS = @LDFLAGS@ + RANLIB = @RANLIB@ + @SET_MAKE@ + +@@ -15,11 +17,11 @@ + ../src/matrices/matrices.a \ + ../src/util/util.a + +-all: blastest eigs_test maxwell_test malloctest normal_vectors ++all: + + libs: + +-check: all ++check: blastest eigs_test maxwell_test malloctest normal_vectors + rm -f blastest.out.test + ./blastest | sed 's/\-0\.000\([ ,)]\)/ 0.000\1/g' | sed 's/\-0\.000$$/ 0.000/g' > blastest.out.test + diff blastest.@SCALAR_TYPE@.out blastest.out.test +diff -Nur mpb-1.4.2.orig/utils/Makefile.in mpb-1.4.2/utils/Makefile.in +--- mpb-1.4.2.orig/utils/Makefile.in 2002-09-14 23:20:55.000000000 +0100 ++++ mpb-1.4.2/utils/Makefile.in 2008-11-25 18:23:46.000000000 +0000 +@@ -1,13 +1,16 @@ + # Variables substituted by the autoconf configure script: + + SHELL = @SHELL@ ++mandir = @mandir@ ++ ++srcdir = @srcdir@ ++top_srcdir = @top_srcdir@ ++VPATH = @srcdir@ + +-CC = @CC@ +-CFLAGS = @CFLAGS@ +-CPPFLAGS = -I../src/util -I../src/matrices -I../src/matrixio @CPPFLAGS@ ++CPPFLAGS = -I$(top_srcdir)/src/util -I$(top_srcdir)/src/matrices -I$(top_srcdir)/src/matrixio -I. @CPPFLAGS@ + DEFS = @DEFS@ -DMPB_VERSION='"'"@MPB_VERSION@"'"' +-LDFLAGS = @LDFLAGS@ + LIBS = @LIBS@ ++LDFLAGS=@LDFLAGS@ + RANLIB = @RANLIB@ + @SET_MAKE@ + +@@ -36,9 +39,9 @@ + + install-mpb-data: mpb-data + $(INSTALL) -d $(prefix)/bin +- $(INSTALL) -m 0755 -s mpb-data $(prefix)/bin/`echo mpb-data|sed '$(transform)'` ++ $(INSTALL) -m 0755 mpb-data $(prefix)/bin/`echo mpb-data|sed '$(transform)'` + $(INSTALL) -d $(mandir)/man1 +- $(INSTALL) -m 0644 mpb-data.1 $(mandir)/man1 ++ $(INSTALL) -m 0644 $(srcdir)/mpb-data.1 $(mandir)/man1 + + clean: + rm -f mpb-data mpb-data.o core diff --git a/sci-physics/mpb/files/mpb-1.4.2-guile18.patch b/sci-physics/mpb/files/mpb-1.4.2-guile18.patch new file mode 100644 index 000000000000..9cb73a099b8b --- /dev/null +++ b/sci-physics/mpb/files/mpb-1.4.2-guile18.patch @@ -0,0 +1,12 @@ +diff -Nur mpb-1.4.2.orig/mpb-ctl/field-smob.c mpb-1.4.2/mpb-ctl/field-smob.c +--- mpb-1.4.2.orig/mpb-ctl/field-smob.c 2012-08-07 20:56:24.538452994 -0700 ++++ mpb-1.4.2/mpb-ctl/field-smob.c 2012-08-07 20:56:43.713557380 -0700 +@@ -157,7 +157,7 @@ + boolean cur_fieldp(SCM obj) + { + if (SCM_NIMP(obj) && SCM_SYMBOLP(obj)) { +- char *s = gh_symbol2newstr(obj, NULL); ++ char *s = gh_symbol2newstr(obj); + int ret = !strcmp(s, "cur-field"); + free(s); + return ret; diff --git a/sci-physics/mpb/files/mpb-1.4.2-headers.patch b/sci-physics/mpb/files/mpb-1.4.2-headers.patch new file mode 100644 index 000000000000..937e5fc373d4 --- /dev/null +++ b/sci-physics/mpb/files/mpb-1.4.2-headers.patch @@ -0,0 +1,11 @@ +diff -Nur mpb-1.4.2.orig/mpb-ctl/matrix-smob.c mpb-1.4.2/mpb-ctl/matrix-smob.c +--- mpb-1.4.2.orig/mpb-ctl/matrix-smob.c 2002-09-13 19:27:35.000000000 +0100 ++++ mpb-1.4.2/mpb-ctl/matrix-smob.c 2008-11-25 18:20:11.000000000 +0000 +@@ -17,6 +17,7 @@ + + #include <stdio.h> + #include <stdlib.h> ++#include <math.h> + + #include "../src/config.h" + diff --git a/sci-physics/mpb/metadata.xml b/sci-physics/mpb/metadata.xml new file mode 100644 index 000000000000..1b9dacc2cdfa --- /dev/null +++ b/sci-physics/mpb/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + The MIT Photonic-Bands (MPB) package is a program for computing + the band structures (dispersion relations) and electromagnetic modes of + periodic dielectric structures, on both serial and parallel computers. It was + developed by Steven G. Johnson at MIT in the Joannopoulos Ab Initio Physics + group. + This program computes definite-frequency eigenstates of Maxwell's + equations in periodic dielectric structures for arbitrary wavevectors, using + fully-vectorial and three-dimensional methods. It is especially + designed for the study of photonic crystals (a.k.a. photonic + band-gap materials), but is also applicable to many other problems + in optics, such as waveguides and resonator systems. + (For example, it can solve for the modes of waveguides with arbitrary + cross-sections.) +</longdescription> +</pkgmetadata> diff --git a/sci-physics/mpb/mpb-1.4.2-r2.ebuild b/sci-physics/mpb/mpb-1.4.2-r2.ebuild new file mode 100644 index 000000000000..7eb255b57e63 --- /dev/null +++ b/sci-physics/mpb/mpb-1.4.2-r2.ebuild @@ -0,0 +1,127 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils autotools flag-o-matic toolchain-funcs + +DESCRIPTION="Photonic band structure program" +SRC_URI="http://ab-initio.mit.edu/mpb/${P}.tar.gz" +HOMEPAGE="http://ab-initio.mit.edu/mpb/" + +LICENSE="GPL-2" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples hdf5 mpi" + +SLOT="0" + +RDEPEND="virtual/lapack + dev-scheme/guile + sci-libs/libctl + sci-libs/fftw:2.1[mpi?] + sys-libs/readline + hdf5? ( sci-libs/hdf5 ) + mpi? ( virtual/mpi )" + +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_prepare() { + epatch \ + "${FILESDIR}"/${P}-autotools.patch \ + "${FILESDIR}"/${P}-guile18.patch \ + "${FILESDIR}"/${P}-headers.patch + cd "${S}" + eautoreconf + # version with inversion symmetry (mpbi). + cp -r "${S}" "${S}_inv" || die + # version with hermitian eps (mpbh). + cp -r "${S}" "${S}_herm" || die + # mpi versions (mpb-mpi). + if use mpi; then + cp -r "${S}" "${S}_mpi" || die + cp -r "${S}" "${S}_inv_mpi" || die + cp -r "${S}" "${S}_herm_mpi" || die + fi + tc-export CC +} + +src_configure() { + # enable legacy API for hdf-1.8 + use hdf5 && append-cflags -DH5_USE_16_API + # + local myconf=( + --with-libctl="${EPREFIX}/usr/share/libctl" + --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" + --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" + $(use_with hdf5) + ) + + econf "${myconf[@]}" + + cd "${S}_inv" + econf "${myconf[@]}" \ + --with-inv-symmetry + + cd "${S}_herm" + econf "${myconf[@]}" \ + --with-hermitian-eps + + if use mpi; then + cd "${S}_mpi" + econf "${myconf[@]}" \ + --with-mpi + cd "${S}_inv_mpi" + econf "${myconf[@]}" \ + --with-inv-symmetry \ + --with-mpi + cd "${S}_herm_mpi" + econf "${myconf[@]}" \ + --with-hermitian-eps \ + --with-mpi \ + CC=mpicc + fi +} + +src_compile() { + local d + for d in . _inv _herm; do + cd "${S}${d}" + emake -C mpb-ctl ctl-io.c + emake + done + if use mpi; then + for d in . _inv _herm; do + cd "${S}${d}_mpi" + emake -C mpb-ctl ctl-io.c CC=mpicc + emake CC=mpicc LD=mpicc + done + fi +} + +src_install() { + einstall + dodoc README NEWS AUTHORS COPYRIGHT ChangeLog TODO + use doc && dohtml doc/* + if use examples; then + insinto /usr/share/doc/${PF} + doins -r mpb-ctl/examples + fi + + newbin "${S}_inv"/mpb-ctl/.mpb mpbi + newbin "${S}_herm"/mpb-ctl/.mpb mpbh + + einfo "Several versions of mpb have been installed:" + einfo "mpb : regular version" + einfo "mpbi: configured for inversion symmetry" + einfo "mpbh: configured for hermitian epsilon" + if use mpi; then + newbin "${S}_mpi"/mpb-ctl/.mpb mpb-mpi + newbin "${S}_inv_mpi"/mpb-ctl/.mpb mpbh-mpi + newbin "${S}_herm_mpi"/mpb-ctl/.mpb mpbi-mpi + einfo "mpb-mpi : regular version with mpi" + einfo "mpbi-mpi: configured for inversion symmetry with mpi" + einfo "mpbh-mpi: configured for hermitian epsilon with mpi" + fi +} diff --git a/sci-physics/paw/Manifest b/sci-physics/paw/Manifest new file mode 100644 index 000000000000..964e89136fe0 --- /dev/null +++ b/sci-physics/paw/Manifest @@ -0,0 +1,3 @@ +DIST paw_2.14.04.dfsg.2-8.debian.tar.gz 75788 SHA256 1fa912310f5c2eb4cd856fca53808d6142451fc6be4ffa3be14f54195f8e2203 SHA512 63800b6071c0614d3d68eceffc23117703a9e48f6a9da3fd160b2eb27b326ffe7dc38718245d40e713b2c047967233e1aa56e7381754bbc95804b4c208d1d270 WHIRLPOOL 38899fa56f370cc4cbae0d593006a09cee451ecfb97b8d236b18bc4a36bfde7d5c4891a9309bd9e8bad9da8d8ba8691fc77b37f7e48545b989f6b9983e61ab38 +DIST paw_2.14.04.dfsg.2-9.debian.tar.gz 79495 SHA256 ff00ccfbc79ea3e727678ff0098d08a87851bc6a18a22b15ddd7e9a7634cef48 SHA512 e0ffd28aef621fbe7ff372bf1add2c3614897c755ada061d80835e43f0e7ebe342c44f5c989110ce53d8896d9738798277689bcb9fcba87c4eeae89e4d340b81 WHIRLPOOL befbf2ef10f1cf28733e06f5d08f36cd1eda8af99640aaf680daec9954ed1ca52a29599855c77e09a949306590a926eba13a5236dc3810debe528c0e720d5bf3 +DIST paw_2.14.04.dfsg.2.orig.tar.gz 3334317 SHA256 68925384706a4a61c477a48ed0fad539d214a4b04fdb9db5ef4e8d453f26c44e SHA512 6e4ef312195936b42ad641a63335586f48e0383e8a7f4330d52173492584f9d03c5fa4eab7e7de594e30556a1daacbe162b4f879718c9c489cb7a89f072b962e WHIRLPOOL a1c78a8d66cc10a1014a96d0b276fc0bf0725ff08ed6055ff4be9c194d50d1416ea32bfae32ea18d1b919d03ff2746c0bda29b74c15b2296f211d58086951551 diff --git a/sci-physics/paw/files/paw-2.14.04-glibc-2.10.patch b/sci-physics/paw/files/paw-2.14.04-glibc-2.10.patch new file mode 100644 index 000000000000..7cfa5aa03d12 --- /dev/null +++ b/sci-physics/paw/files/paw-2.14.04-glibc-2.10.patch @@ -0,0 +1,11 @@ +--- src/pawlib/paw/cpaw/bugrep.c.orig 2009-07-13 00:38:38.000000000 +0400 ++++ src/pawlib/paw/cpaw/bugrep.c 2009-07-13 08:47:54.934308924 +0400 +@@ -20,6 +20,8 @@ + * Paw + * + */ ++#define _POSIX_SOURCE ++ + #include "paw/pilot.h" + #if defined(CERNLIB_BUGREPORT) + /*CMZ : 2.07/19 21/11/95 18.17.13 by Unknown*/ diff --git a/sci-physics/paw/metadata.xml b/sci-physics/paw/metadata.xml new file mode 100644 index 000000000000..9450758ff229 --- /dev/null +++ b/sci-physics/paw/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + PAW is an interactive program providing interactive graphical + presentation and statistical and mathematical analysis tools. It is + designed to work on objects familiar to physicists such as histograms, + event files (Ntuples), vectors, etc. + The program is linked statically against the CERN libraries on 64-bit + architectures in order to function properly, as its design is not very + 64-bit clean. Even so, AMD64 is the only 64-bit platform where it + functions well. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/paw/paw-2.14.04-r4.ebuild b/sci-physics/paw/paw-2.14.04-r4.ebuild new file mode 100644 index 000000000000..a223aad0e5e5 --- /dev/null +++ b/sci-physics/paw/paw-2.14.04-r4.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs fortran-2 + +DEB_PN=paw +DEB_PV=${PV}.dfsg.2 +DEB_PR=8 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's Physics Analysis Workstation data analysis program" +HOMEPAGE="https://paw.web.cern.ch/paw/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="amd64 hppa sparc x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-physics/cernlib + x11-libs/libXaw + >=x11-libs/motif-2.3:0 + x11-libs/xbae" +DEPEND="${RDEPEND} + dev-lang/cfortran + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . && cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + # fix some path stuff and collision for comis.h, + # already installed by cernlib and replace hardcoded fortran compiler + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e '/comis.h/d' \ + -e "s/gfortran/$(tc-getFC)/g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + epatch "${FILESDIR}"/${P}-glibc-2.10.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" +} + +src_compile() { + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/paw/paw-2.14.04-r5.ebuild b/sci-physics/paw/paw-2.14.04-r5.ebuild new file mode 100644 index 000000000000..8f170c1d7e36 --- /dev/null +++ b/sci-physics/paw/paw-2.14.04-r5.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs fortran-2 + +DEB_PN=paw +DEB_PV=${PV}.dfsg.2 +DEB_PR=9 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's Physics Analysis Workstation data analysis program" +HOMEPAGE="https://paw.web.cern.ch/paw/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~hppa ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-physics/cernlib + x11-libs/libXaw + >=x11-libs/motif-2.3:0 + x11-libs/xbae" +DEPEND="${RDEPEND} + dev-lang/cfortran + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . && cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + # fix some path stuff and collision for comis.h, + # already installed by cernlib and replace hardcoded fortran compiler + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e '/comis.h/d' \ + -e "s/gfortran/$(tc-getFC)/g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + epatch "${FILESDIR}"/${P}-glibc-2.10.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" +} + +src_compile() { + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/pythia/Manifest b/sci-physics/pythia/Manifest new file mode 100644 index 000000000000..32765731149b --- /dev/null +++ b/sci-physics/pythia/Manifest @@ -0,0 +1,13 @@ +DIST CT10.tar.gz 10246366 SHA256 bcef4600c5af42d6b151b60e29297609e3604f02f5e80f8ec7767a22b185f49d SHA512 90406bd102ab54b683fa3e6f3fc759febea2454a0b96c6a8d373cdec297f5d652097057a015c7d87241792ed9b5d9ac658a33155cdd7362f59110f8f06ecce73 WHIRLPOOL a433983f9938d848a0b23f94195c41a3caf2a4a131f225f8ec27b43d7ca88761e302ed7968c66492b1fee7288e921aa7a40644833d90eeb66a139a8524553003 +DIST MRST2004qed.tar.gz 185079 SHA256 f043f5385d828523169458c01e2d82767468002789ad792d3543efacc4fcb9cd SHA512 404aacf0e241f572cc42ad4cf963deef1acd3d365fa68cfa3518878f921858046377ea39caf663fdced2cdde07af2f6ce695737f7fea229489df3d3f38283c95 WHIRLPOOL 1eb5a8c5a63005b1087ad5b39faf5ba928071ca1edb3aa9e957b43b0a32a3ddb252b75c5fd30f2e364f628583834febc6ff14984b832f2916ad06a2fcdf0d77d +DIST MRST2007lomod.tar.gz 56685 SHA256 26533c463c17c96c467d40a0aa5603bbe657f986e05154e90782aac43f34598d SHA512 8e55627a01c85d90a62e4fb11b115c2faac2220479b6d558d3d6f1b801fc5c3e88abc377cd5437ccaeedd34b2ca42d6e833014566b796e5e1eebcf4d620e5dc0 WHIRLPOOL 16dfc110168fb3d865f3e743b4a8ce5e5995496fee53a286e82c647eff5afb7072e9d1ef8c940408c4a8184e5a9f7a190f9deea26e1b7bf227c1e5d6eaa3ff77 +DIST NNPDF23_nlo_as_0119_qed_mc.tar.gz 25223180 SHA256 61e36f3aec29e7b38d161a4ebc4978032e5e1f7af70764f6726cabdbac6283b1 SHA512 fc6998d50a61bbe65eef827021c0f453164795c079daef6a4932f825f8db4ae318bbf0e8781b61f1d3ffa9a495b5c4813af3aa31c77694657a44356d93fa970f WHIRLPOOL 31fe0ba55fac9d032441dc955a2117d42d2ab1cc697567e4b9350c4c1866982036178378a9ddeb5416ef1c2712e54cbba32dac4260fff0de07d7fc8c3a2b339d +DIST NNPDF23_nnlo_as_0119_qed_mc.tar.gz 28940412 SHA256 4f9598322452856e165ea419ef878bb9b5d8284933cef896b7bc339d1f8ae728 SHA512 5088c30acbd1da4e412ba9f6a997ceaa34f426f41c7ebacaf4d2e8aa49b8b45052913e8d873b293d9f140c01e82c05735b66dd527a9aa124b86f73bf5e4d8c53 WHIRLPOOL 1845bb1dbd7b23389fa45af43517e36abc941d6beb2fc650462e1ef875781d0ab40186ae4f4ddfc0ed6d819be056dd11fd63e2bdf02ae1d9365892476415235c +DIST cteq66.tar.gz 8647237 SHA256 1e1987c3b844d06bac8c205544ea1613515de2965e7e5565892acf37984a2626 SHA512 25d0fa01dcdb59d71c7092367af8258471a2bc6dfd146766cc79f90ffb0feafa0f2011d0a37a7d75315c10ba7c7a6e3fa583d9c0a28119b072228ac800294e48 WHIRLPOOL a8c34f0242fd6a2986484bf60793604a07ad0356b1fabb6350289afd4655f2eeb1953d0e558440b94ed30a7af4cd5d58d9fc07f3f06a72c3f3381094b8036321 +DIST cteq6l1.tar.gz 317834 SHA256 57c9c99d7b83c8ed1ca70480a0ec7bf2183bfa1bd9276a0e146772c5cf3bb5ac SHA512 7177608e97077eaf45a292db4ea74eb9a28b4b500ab8be02098b4837a5583cd397828abc3bf43ead448926eaa75ae3968bd059ecde333d90ed6e4295cbe1873c WHIRLPOOL cb0fff30e96dbcda1ac76550968bda22872d249d6fe14f31060aef5d1913b314365b933fb2bc57676ac5578f39ed3824cce2cd657086b4a92aa4d6e4ce037239 +DIST lutp0613man2.pdf 2902047 SHA256 03d637310ea80f0d7aea761492bd38452c602890d8cf913a1ec9edacd79fa43d SHA512 a8439b3b150b6f3924d4d3671a4fad6a815c374b1f46060072ca6c1faa797a2f73f8727920aaa7ae885c4f6f135c8d8f94d43e518cfe25271bb95652112def58 WHIRLPOOL dd74046a145264653efdc1f96c330a0aa1e71b72578f32b114d9041c6a50e6e03aa5b3e028ab737afa01d9f3fc9928fa3589238ff4c232e90c8362201792ef99 +DIST pythia-6.4.18-examples.tar.bz2 36366 SHA256 17b1809fb0cffba20115c2bc1032c24d8efece25bd3f1f632f88265ade4dd084 SHA512 ba921379a6df4ca417b60ea5b78af506f13135cdf896fa6beeca9713428ad6f298c94c0fe65fca3e583f8f268dcf84ebe4f1f81b46fd865d5f641f7c1e9fa7e1 WHIRLPOOL 5b53f523d0819400da791d471c207c4d0d6cfd43cbb9423900b593015aa4db68632d97615ffd213493ff0b0306ce7b8c4851e58672e1188df1a61352e1af0d17 +DIST pythia-6.4.28.tar.xz 490248 SHA256 6ca6acc172314cf7b56e2a8e18321d28ce57a511e34210a6c64ebbfd5e06d5f4 SHA512 f9db72658f2132ce08d31c8a9f7fe727466b184ef41cc4b762fe2bde48dbdfd7b5df19b21a869e20a1f107c96e9daec115c980e11592968eb2cad666b7c96bdc WHIRLPOOL d6ab42af092348b1ae5c5078c34ef17042b46f728d6c4068cd0930999ccbfefae9b55be05499188525c9fc6499c8cb8c490fe6a37f04bf9b45048f7cf8026cdb +DIST pythia6.tar.gz 567451 SHA256 ebc90b8ec94897d8b09030341323d2c7c6e5c7c65077f98b96c8cff00d40a5ce SHA512 baa18023de22c3e90f14d2a5a39efa171905f507a31a90f87c65dca271b3be4c9f0d1a56282f5a04b3efabe0b5b15c964e4569d1f9994a75750e52e0be4360b1 WHIRLPOOL e334779f77e938cde85ecd0fbc2dbf0d86a52fc1ef673c909b8533f779e51d6d6680bc5de3aceeb002015ccfdf03da3f975aaf0cc7a249c462cdd3b206c359a2 +DIST pythia8186.tgz 8921248 SHA256 1c0914fc04801ee922c1ad3b544a3cd48b34d9afa4407ae40afbacd009039bd2 SHA512 84729004abbdf522183c27918ae35db037a8954af761a2b452dcff54f82076b1e3bfc7fe9ea0a7cb2c0b6499aedb1c25cc13768d47b24edaa08d631b55d0b86b WHIRLPOOL ecef83d2cb018b1aac55225850cf2a3a8f2b87d08f99bd9c5881f4fa341f012eeabed3b9a43ffda3699daebc54c181d08aac30c1f6b514e98516c29e88a6fbaf +DIST pythia8210.tgz 14301345 SHA256 a2564c6011235a286115ba9da065f50c1233229b2f1a824583565dfeec0baa35 SHA512 fe2d02e32fd5d25bcdcc216754b91ca509a189c58f1a06ca8deba975af552586632fc8cf8ad3e62920884ee64c4af596fbe7c6872f5ddbd1f5a0cea4ba4bc90d WHIRLPOOL d2d3f212ed2ad700fa6ae44b2b670cce1623e80382af04072bee884a72ea269346c10728cc77cfa4c9377e8cd775febe9488427cb0b890e52c651efebd66f60c diff --git a/sci-physics/pythia/files/pythia8209-root-noninteractive.patch b/sci-physics/pythia/files/pythia8209-root-noninteractive.patch new file mode 100644 index 000000000000..4581eaea389b --- /dev/null +++ b/sci-physics/pythia/files/pythia8209-root-noninteractive.patch @@ -0,0 +1,17 @@ +--- pythia8209/examples/main91.cc.orig 2015-06-05 07:44:27.000000000 +0300 ++++ pythia8209/examples/main91.cc 2015-06-05 08:17:22.477228166 +0300 +@@ -62,13 +62,9 @@ + // Statistics on event generation. + pythia.stat(); + +- // Show histogram. Possibility to close it. +- mult->Draw(); +- std::cout << "\nDouble click on the histogram window to quit.\n"; +- gPad->WaitPrimitive(); +- + // Save histogram on file and close file. + mult->Write(); ++ outFile->Close(); + delete outFile; + + // Done. diff --git a/sci-physics/pythia/files/pythia8209-run-tests.patch b/sci-physics/pythia/files/pythia8209-run-tests.patch new file mode 100644 index 000000000000..d1edc8393726 --- /dev/null +++ b/sci-physics/pythia/files/pythia8209-run-tests.patch @@ -0,0 +1,20 @@ +--- pythia8209/examples/Makefile.orig 2015-06-04 22:21:53.000000000 +0300 ++++ pythia8209/examples/Makefile 2015-06-05 05:35:25.324262331 +0300 +@@ -139,3 +139,17 @@ + rm -f test[0-9][0-9][0-9]; rm -f out[0-9][0-9][0-9];\ + rm -f weakbosons.lhe; rm -f Pythia8.promc; rm -f hist.root;\ + rm -f *~; rm -f \#*; rm -f core*; rm -f *Dct.* ++ rm -f main*out *.dat ++ ++# Run tests, inject test-specific arguments when needed ++main%.out: main% ++ ./$< \ ++ $(if $(findstring $*,16 42 43 $(shell seq 81 89)), main$*.cmnd) \ ++ $(if $(findstring $*, $(shell seq 81 83)), w+_production_lhc_0.lhe) \ ++ $(if $(findstring $*, 84), hepmcout84.dat 2 w+_production_lhc) \ ++ $(if $(findstring $*, $(shell seq 85 88)), w_production) \ ++ $(if $(findstring $*, 42 43 $(shell seq 81 89)), histout$*.dat) \ ++ > $@ ++ ++main89.out: main89 ++ $(foreach cmd, $(wildcard main89*.cmnd), ./$< $(cmd) histout-$(cmd).dat >> $@ || exit;) diff --git a/sci-physics/pythia/metadata.xml b/sci-physics/pythia/metadata.xml new file mode 100644 index 000000000000..a0a2a6ec97b9 --- /dev/null +++ b/sci-physics/pythia/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <longdescription lang="en"> + PYTHIA is a program for the generation of high-energy physics + events, i.e. for the description of collisions at high energies + between elementary particles such as e+, e-, p and pbar in various + combinations. It contains theory and models for a number of physics + aspects, including hard and soft interactions, parton distributions, + initial- and final-state parton showers, multiple interactions, + fragmentation and decay. It is largely based on original research, + but also borrows many formulae and other knowledge from the + literature. +</longdescription> + <use> + <flag name="fastjet">Build jets using the <pkg>sci-physics/fastjet</pkg> package</flag> + <flag name="hepmc">Adds support for High Energy Physics Monte Carlo Generators <pkg>sci-physics/hepmc</pkg></flag> + <flag name="lhapdf">Support the use of external PDF sets via <pkg>sci-physics/lhapdf</pkg></flag> + <flag name="root">Use <pkg>sci-physics/root</pkg> trees and histograms (in examples only)</flag> + </use> +</pkgmetadata> diff --git a/sci-physics/pythia/pythia-6.4.28.ebuild b/sci-physics/pythia/pythia-6.4.28.ebuild new file mode 100644 index 000000000000..dc841de4d0b4 --- /dev/null +++ b/sci-physics/pythia/pythia-6.4.28.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit autotools fortran-2 versionator + +MV=$(get_major_version) +MY_PN=${PN}${MV} +DOC_PV=0613 +EX_PV=6.4.18 + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia6.hepforge.org/" + +# pythia6 from root is needed for some files to interface pythia6 with root. +# To produce a split version, replace the 6.4.x by the current version: +# svn export http://svn.hepforge.org/pythia6/tags/v_6_4_x/ pythia-6.4.x +# tar cJf pythia-6.4.x.tar.xz +SRC_URI=" + http://dev.gentoo.org/~bicatali/distfiles/${P}.tar.xz + ftp://root.cern.ch/root/pythia6.tar.gz + doc? ( http://home.thep.lu.se/~torbjorn/pythia/lutp${DOC_PV}man2.pdf ) + examples? ( mirror://gentoo/${PN}-${EX_PV}-examples.tar.bz2 )" + +SLOT="6" +LICENSE="public-domain" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +src_prepare() { + cp ../pythia6/tpythia6_called_from_cc.F . + cp ../pythia6/pythia6_common_address.c . + cat > configure.ac <<-EOF + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + LT_INIT + AC_CHECK_LIB(m,sqrt) + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + echo >> Makefile.am "lib_LTLIBRARIES = libpythia6.la" + echo >> Makefile.am "libpythia6_la_SOURCES = \ " + # replace wildcard from makefile to ls in shell + local f + for f in py*.f struct*.f up*.f fh*.f; do + echo >> Makefile.am " ${f} \\" + done + echo >> Makefile.am " ssmssm.f sugra.f visaje.f pdfset.f \\" + echo >> Makefile.am " tpythia6_called_from_cc.F pythia6_common_address.c" + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + dodoc update_notes.txt + use doc && dodoc "${DISTDIR}"/lutp${DOC_PV}man2.pdf + if use examples; then + insinto /usr/share/doc/${PF} + doins -r "${WORKDIR}"/examples + fi +} diff --git a/sci-physics/pythia/pythia-8.1.86-r1.ebuild b/sci-physics/pythia/pythia-8.1.86-r1.ebuild new file mode 100644 index 000000000000..bfaafd213f52 --- /dev/null +++ b/sci-physics/pythia/pythia-8.1.86-r1.ebuild @@ -0,0 +1,101 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils versionator toolchain-funcs multilib + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc static-libs" + +DEPEND=" + gzip? ( dev-libs/boost sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + PYTHIADIR="${EPREFIX}/usr/share/pythia8" + # set datadir for xmldor in include file + sed -i \ + -e "s:../xmldoc:${PYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2::g" \ + configure || die + sed -i \ + -e "s:LIBDIR=.*:LIBDIR=$(get_libdir):" \ + -e "s:LIBDIRARCH=.*:LIBDIRARCH=$(get_libdir):" \ + -e "s:cp -r lib:cp -r $(get_libdir):" \ + -e '/ln -fs/d' \ + Makefile examples/Makefile || die +} + +src_configure() { + export USRCXXFLAGS="${CXXFLAGS}" + export USRLDFLAGSSHARED="${LDFLAGS}" + tc-export CC CXX + # homemade configure script + ./configure \ + --installdir="${EPREFIX}/usr" \ + --datadir="${PYTHIADIR}" \ + --enable-shared \ + $(usex gzip "--enable-gzip=yes" "") \ + $(usex hepmc "--with-hepmcversion=2 --with-hepmc=${EPREFIX}/usr" "") \ + || die + if ! use static-libs; then + sed -i \ + -e '/targets.*=$(LIBDIR.*\.a$/d' \ + -e 's/+=\(.*libpythia8\.\)/=\1/' \ + Makefile || die + sed -i \ + -e 's:\.a:\.so:g' \ + -e 's:$(LIBDIRARCH):$(LIBDIR):g' \ + examples/Makefile || die + fi +} + +src_test() { + cd examples || die + # use emake for parallel instead of long runmains + local tests="$(echo main0{1..8})" t + use hepmc && tests="${tests} main31" + emake ${tests} + for t in ${tests}; do + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + bin/${t}.exe > ${t}.out || die "test ${t} failed" + done + emake clean && rm main*out +} + +src_install() { + emake INSTALLDIR="${ED}/usr" DATADIR="${D}/${PYTHIADIR}" install + rm -r "${D}"/${PYTHIADIR}/{html,php}doc || die + echo "PYTHIA8DATA=${PYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc GUIDELINES AUTHORS README + if use doc; then + dodoc worksheet.pdf htmldoc/pythia8100.pdf + dohtml -r htmldoc/* + fi + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples rootexamples + docompress -x /usr/share/doc/${PF}/{root,}examples + fi +} diff --git a/sci-physics/pythia/pythia-8.1.86.ebuild b/sci-physics/pythia/pythia-8.1.86.ebuild new file mode 100644 index 000000000000..d04b76e43f56 --- /dev/null +++ b/sci-physics/pythia/pythia-8.1.86.ebuild @@ -0,0 +1,101 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils versionator toolchain-funcs multilib + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc static-libs" + +DEPEND=" + gzip? ( dev-libs/boost sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + PYTHIADIR="${EPREFIX}/usr/share/pythia8" + # set datadir for xmldor in include file + sed -i \ + -e "s:../xmldoc:${PYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2::g" \ + configure || die + sed -i \ + -e "s:LIBDIR=.*:LIBDIR=$(get_libdir):" \ + -e "s:LIBDIRARCH=.*:LIBDIRARCH=$(get_libdir):" \ + -e "s:cp -r lib:cp -r $(get_libdir):" \ + -e '/ln -fs/d' \ + Makefile examples/Makefile || die +} + +src_configure() { + export USRCXXFLAGS="${CXXFLAGS}" + export USRLDFLAGSSHARED="${LDFLAGS}" + tc-export CC CXX + # homemade configure script + ./configure \ + --installdir="${EPREFIX}/usr" \ + --datadir="${PYTHIADIR}" \ + --enable-shared \ + $(usex gzip "--enable-gzip=yes" "") \ + $(usex hepmc "--with-hepmcversion=2 --with-hepmc=${EPREFIX}/usr" "") \ + || die + if ! use static-libs; then + sed -i \ + -e '/targets.*=$(LIBDIR.*\.a$/d' \ + -e 's/+=\(.*libpythia8\.\)/=\1/' \ + Makefile || die + sed -i \ + -e 's:\.a:\.so:g' \ + -e 's:$(LIBDIRARCH):$(LIBDIR):g' \ + examples/Makefile || die + fi +} + +src_test() { + cd examples || die + # use emake for parallel instead of long runmains + local tests="$(echo main0{1..8})" t + use hepmc && tests="${tests} main31" + emake ${tests} + for t in ${tests}; do + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + bin/${t}.exe > ${t}.out || die "test ${t} failed" + done + emake clean && rm main*out +} + +src_install() { + emake INSTALLDIR="${ED}/usr" DATADIR="${D}/${PYTHIADIR}" install + rm -r "${D}"/${PYTHIADIR}/{html,php}doc || die + echo "PYTHIA8DATA=${PYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc GUIDELINES AUTHORS README + if use doc; then + dodoc worksheet.pdf + dohtml -r htmldoc/* + fi + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-physics/pythia/pythia-8.2.10.ebuild b/sci-physics/pythia/pythia-8.2.10.ebuild new file mode 100644 index 000000000000..a9d797450eb5 --- /dev/null +++ b/sci-physics/pythia/pythia-8.2.10.ebuild @@ -0,0 +1,184 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils multilib toolchain-funcs versionator + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) +LHA_VER="6.1" + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz + test? ( lhapdf? ( + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/CT10.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/MRST2007lomod.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nnlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq66.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq6l1.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/unvalidated/MRST2004qed.tar.gz + ) )" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc fastjet lhapdf root static-libs test" + +RDEPEND=" + fastjet? ( >=sci-physics/fastjet-3 ) + gzip? ( sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= ) + lhapdf? ( >=sci-physics/lhapdf-6:= ) +" +# ROOT is used only when building related tests +DEPEND="${RDEPEND} + test? ( root? ( sci-physics/root:= ) ) +" + +S="${WORKDIR}/${MY_P}" + +pkg_pretend() { + if use root && ! use test; then + ewarn "ROOT support will only affect examples code build during test stage." + ewarn "Since you have tests disabled, this is a no-op." + fi +} + +src_prepare() { + PYTHIADIR="/usr/share/pythia8" + EPYTHIADIR="${EPREFIX}${PYTHIADIR}" + # set datadir for xmldor in include file + sed -i \ + -e "s:../share/Pythia8/xmldoc:${EPYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2:${CXXFLAGS}:g" \ + -e "s:Cint:Core:g" \ + configure || die + sed -i 's:$(CXX) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):$(CXX) $(LDFLAGS) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):g' \ + Makefile || die + sed -i 's:$(CXX):$(CXX) $(LDFLAGS):' examples/Makefile || die + # we use lhapdf6 instead of lhapdf5 + # some PDFs changed, use something similar + sed -i \ + -e "s:LHAPDF5:LHAPDF6:g" \ + -e "s:\.LHgrid::g" \ + -e "s:\.LHpdf::g" \ + -e "s:MRST2001lo:MRST2007lomod:g" \ + -e "s:cteq6ll:cteq6l1:g" \ + -e "s:cteq6m:cteq66:g" \ + examples/*.{cc,cmnd} || die + # After lhapdf5->6 migration PDFs are identical within ~1/1000 + # https://www.hepforge.org/archive/lhapdf/pdfsets/6.1/README + sed -i \ + -e "s:1e-8:3e-1:g" \ + -e "s:nlo_as_0119_qed:nlo_as_0119_qed_mc:g" \ + -e "s:xmldoc:share/Pythia8/xmldoc:g" \ + examples/main54.cc || die + # ask cflags from root + sed -i "s:root-config:root-config --cflags:g" examples/Makefile || die + if ! use static-libs; then + sed -i \ + -e '/TARGETS=$(LOCAL_LIB)\/libpythia8\.a/d' \ + -e 's:libpythia8\.a$:libpythia8\.so$:g' \ + Makefile || die + sed -i 's:libpythia8\.a:libpythia8\.so:g' \ + examples/Makefile || die + fi + + epatch "${FILESDIR}/${PN}8209-run-tests.patch" + epatch "${FILESDIR}/${PN}8209-root-noninteractive.patch" +} + +# TODO: the following optional packages are out of Gentoo tree: +# - EvtGen http://atlas-computing.web.cern.ch/atlas-computing/links/externalDirectory/EvtGen/ +# - PowHEG http://powhegbox.mib.infn.it/ +# - ProMC https://github.com/Argonne-National-Laboratory/ProMC/ +src_configure() { + # homemade configure script + ./configure \ + --arch=Linux \ + --cxx=$(tc-getCXX) \ + --enable-shared \ + --prefix="${EPREFIX}/usr" \ + --prefix-lib="$(get_libdir)" \ + --prefix-share="${EPYTHIADIR}" \ + $(usex fastjet "--with-fastjet3" "") \ + $(usex gzip "--with-gzip" "") \ + $(usex hepmc "--with-hepmc2" "") \ + $(usex lhapdf "--with-lhapdf6 + --with-lhapdf6-plugin=LHAPDF6.h + --with-lhapdf6-lib=${EPREFIX}/usr/$(get_libdir)" "") \ + $(usex root "--with-root + --with-root-include=${EPREFIX}/usr/include/root + --with-root-lib=${EPREFIX}/usr/$(get_libdir)/root" "") \ + || die + + # fix pythia config script + sed -i \ + -e 's:pythia8/examples/Makefile.inc:pythia8/Makefile.inc:' \ + -e 's:LINE%=:LINE%%=:' \ + bin/pythia8-config || die +} + +src_test() { + cd examples || die + + local tests="$(echo main{{01..32},37,38,61,62,73,80}.out)" + use hepmc && tests+=" $(echo main{41,42,85,86}.out)" + use hepmc && use lhapdf && tests+=" $(echo main{43,{87..89}}.out)" + use lhapdf && tests+=" $(echo main{51..54}.out)" + use fastjet && tests+=" $(echo main{71,72}.out)" + use fastjet && use hepmc && use lhapdf && tests+=" $(echo main{81..84}).out" + use root && tests+=" main91.out" + # Disabled tests: + # 33 needs PowHEG + # 46 needs ProMC + # 48 needs EvtGen + # 92 generated ROOT dictionary is badly broken + + # use emake for parallel instead of long runmains + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + PYTHIA8DATA="../share/Pythia8/xmldoc/" \ + LHAPDF_DATA_PATH="${WORKDIR}" \ + emake ${tests} + emake clean +} + +src_install() { + # make install is too broken, much easier to install manually + dobin bin/pythia8-config + doheader -r include/* + dolib lib/* + insinto "${PYTHIADIR}" + doins -r share/Pythia8/xmldoc examples/Makefile.inc + + echo "PYTHIA8DATA=${EPYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc AUTHORS GUIDELINES README + if use doc; then + dodoc share/Pythia8/pdfdoc/* + dohtml -r share/Pythia8/htmldoc/* + fi + if use examples; then + # reuse system Makefile.inc + rm examples/Makefile.inc || die + sed -i "s:include Makefile.inc:include ${EPYTHIADIR}:" \ + examples/Makefile || die + + insinto /usr/share/doc/${PF} + doins -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + + # cleanup + unset PYTHIADIR EPYTHIADIR +} diff --git a/sci-physics/reduze/Manifest b/sci-physics/reduze/Manifest new file mode 100644 index 000000000000..75027702ed4a --- /dev/null +++ b/sci-physics/reduze/Manifest @@ -0,0 +1 @@ +DIST reduze-2.0.9.tar.gz 568570 SHA256 e56494519faffa381f16c8c9b439e9c17485392d47b836ef372d3c4ff451e67a SHA512 69818d7edaf3c69996d3f703401865f67722ec8d33b285642c71030f2852273b4b4028a00f0c639589cb801def739f93a05d504d4fb2edf228674962897d5f01 WHIRLPOOL 1aa84d755668badf01c077b3e9c63cf1c68c5f37f438875c3f3de11804013e551a92f98c7aacd5b8ea155e1540023d4273f1ceb98ea4e7551de9fe7613b18021 diff --git a/sci-physics/reduze/metadata.xml b/sci-physics/reduze/metadata.xml new file mode 100644 index 000000000000..ae17f7db132d --- /dev/null +++ b/sci-physics/reduze/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<maintainer> + <email>grozin@gentoo.org</email> + <name>Andrey Grozin</name> +</maintainer> +<longdescription lang="en"> + A program for reducing Feynman integrals +</longdescription> +</pkgmetadata> diff --git a/sci-physics/reduze/reduze-2.0.9.ebuild b/sci-physics/reduze/reduze-2.0.9.ebuild new file mode 100644 index 000000000000..13d59264afd8 --- /dev/null +++ b/sci-physics/reduze/reduze-2.0.9.ebuild @@ -0,0 +1,66 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="Program for reducing Feynman integrals" +HOMEPAGE="http://reduze.hepforge.org/" +SRC_URI="http://reduze.hepforge.org/download/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="berkdb doc mpi" + +RDEPEND=">=sci-mathematics/ginac-1.4.1 + berkdb? ( sys-libs/db[cxx] ) + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen )" + +DOCS=( ChangeLog README ) + +src_prepare() { + # gentoo doc directory + sed -i \ + -e "s:share/reduze:share/doc/${PF}:g" \ + CMakeLists.txt || die + use doc || sed -i -e '/share/d' CMakeLists.txt + # prefix fix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + reduze/CMakeLists.txt || die + + # remove bundled yaml-cpp + # no: it does not build. is it patched? + # sed -i -e '/add_subdirectory ("yaml")/d' CMakeLists.txt || die +} + +src_configure() { + local mycmakeargs=( + -DUSE_HASH_TABLE=ON + $(cmake-utils_use berkdb USE_DATABASE) + $(cmake-utils_use mpi USE_MPI) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile all $(use doc && echo doc) +} + +src_test() { + cd "${CMAKE_BUILD_DIR}" + emake check + use mpi && emake check_mpi +} + +src_install() { + cmake-utils_src_install + use doc && dohtml -r "${CMAKE_BUILD_DIR}"/doc/code/html/* +} diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest new file mode 100644 index 000000000000..65d6949c4eac --- /dev/null +++ b/sci-physics/root/Manifest @@ -0,0 +1,10 @@ +DIST ROOTUsersGuide.pdf 9124822 SHA256 70a96c4a2573dc0d320142f86993ecfda24caa755e910340a3014120f2997c8b SHA512 c3b4c18ef2e13968afdf67c6003249d4cfe6ea661fa32ce25127361bae7e3376a25cd3b11591292f3975bcd8105291aca52f2f6214c9fe45f4bd6e7e44d54b25 WHIRLPOOL 11256ba7837d17e5795cf71ac32db43d7d8f797bfbddf5f71612fe2f8fb2e01354372c0ea8f0bc22868881eb0bfdc8a3e3f1b05293d2750d293aa4d59217b2e6 +DIST RooFit_Users_Manual_2.91-33.pdf 1330062 SHA256 101c4e4c41962238fcabf1caa86cafc51241a1800594491b2e62ef8b565a5646 SHA512 732d7dea3541b51e5f0b9b5b70dae57e1bdbb2504c4222d5e5095ec0f9b67307011c1f31c2c95be419b53dd8426f52f62f6c9370084208176a2ed3d7f25d783b WHIRLPOOL 033897bef4bdb13246a81ea6749f7895e6c4d639752e932130234ad9153bb399a4e5d416237850da27f139d3cccc53d9adb7a077abf20d257ce057157d6c3696 +DIST TMVAUsersGuide-v4.03.pdf 3913533 SHA256 0cdbb4a2d19eb7a86e2911cfa73a905932e862d6c94be10b7662a9355b0241af SHA512 d8bb2ce35ef32c4877059898f56513db0b1057924e21935a3d3a6f114748e167984c43fd2ec7e54197fccff875540543968fea9a8e75bf63f5f13521724a7ddb WHIRLPOOL 0a3e2e61e8e32f3a22757178adf033f9fbb89014aecd4df7f8bd49677d772bb3ad2c0f5526259611879f6bb20df647c01e23f53ade483d7a3e2242f8aee6c6aa +DIST info.png 2060 SHA256 51de6661250f3fb71c6c8250cbc4bdc4dc4283cc90240b4dc1ee6168e8d40279 SHA512 81a730eefbe7a7e15d5840491402c7644bf7ed5d5f8f3830ed9457b343cc7882480e993ea84aef93500742cd0fe8469859cd2c925e5582b91ef56406804ae276 WHIRLPOOL 02ea6daf9e3d21947ebf5dd01c455a13f2fcbf9981be34a150056a3510122ca49e3d137d4f242c7218d4d06ace09566d513a04f09071723ac244f5a38e982bac +DIST root-banner.png 132555 SHA256 d165e1cc175f654ff79af39193a6144678f600e14a53dd20e2b216b3e8951e94 SHA512 139347f396e88c8062d847d612949204cb80e551a826d926950ca8ab967f0d496487fed17a227fc796ae4db23fca758d91a0af7943142adbed358e98d7667b1f WHIRLPOOL dd23e26acf9303b404cda8135d6946af3b1abba3dfdff8d80e56096f810d50a01ebfb52dc1e6ee1d1b99fbb5859dc850e0e368155339b5007294d95ce8909857 +DIST root_v5.32.03.source.tar.gz 55529362 SHA256 575057c429625df69f0fa5c303287acefff185cda8cf8d1e9a6b2d21097d5ae6 SHA512 2e067eb9c6bbda5cf4df6973a3cf5307540247fb07c349f7ee74c0cf6a4abbb63f585a9ff67139cae985250fc5c5106b5ea03d7d9d2bcd20269e0ec8760ebd02 WHIRLPOOL 87dbf6f55f82001e07afc3b467e95f841f185f1f67d1dbd953f73e8aa9127ef8485db84100d6e9a08f0ae6aa5b45a565398eb6723145fff16c07e5158bb3e3ab +DIST root_v5.34.26.source.tar.gz 75171961 SHA256 c1fd2a249bb7210914b42e35dba4f1262cfa46b79ef7a41f73d7f08f8c54a643 SHA512 f5da5e20d1763608a32d78c48581e574a3f51aef47ecf6987a4064d1fb3234dfc9f626e041a17213f881f52f807ed6a6da60bf1d24951fa7dc2cadd94f8dd8b4 WHIRLPOOL 77b48b815c971642da68b71732a0ea3372648634281be634037b13cb58488f7075ec8bfc9a684e55d85cd9b038f229be29b19a15dfc829f0ce63a5f17241c23c +DIST root_v5.34.32.source.tar.gz 75170203 SHA256 939c7592802a54b6cbc593efb6e51699bf52e92baf6d6b20f486aaa08480fc5f SHA512 6485f2bb544947173e1feb2cfb41d6a176020027f1193d9388700a797ba4badbf497022e6129fdc4879e709460bf1efabf3e51c51840f0c781fa12e631419afc WHIRLPOOL 695147a519415b99e73fdad1cd61bb1944e292628236b5a7cbf1835174c950fa9cb068431a8164f24663323163012ea652db84d082f9f1eb1fcae79489575d9e +DIST root_v6.02.05.source.tar.gz 99121880 SHA256 7a5d4af171ba3b8a736c462b2041f8f35bd4c1d3b6a22c32a3ebd3ffe144ae60 SHA512 b30bc4aafe294ee069ee4c884ff70c983539a48eda586cd1938d00d4688f10e94a435640965b89c6d100fdd998453a4c1ae2109d5f1427f23865a868c561d684 WHIRLPOOL de363835fa00ffa0ff6e596b3c92b59ed59378bac3a344c066f7603d6104058203f76181d4c15478fd9066aedbe6a514257d5796feedb2d5d0d789b263e92955 +DIST rootdrawing-logo.png 15051 SHA256 1dfd913cad53a3ebd6bf560d14df918cab5a295cc7d155944a8e27284af83a6b SHA512 14aa13ebfed3c9412d7d7d04c250740b25fe3af6bcb07e618045a5cec2dc23698a251fd7df2db1a6c37331084db99b029b387ea81c25ac825fc7ae10ad164a68 WHIRLPOOL 877a959a5aead73ba69dbb805c9869cbd6a047ea476bd4e7fef80781563a61d20dad49dd4d8b0005bfc58e8f7c7d38efbb3e085a95974feb81dfc9e339c18741 diff --git a/sci-physics/root/files/proofd.confd b/sci-physics/root/files/proofd.confd new file mode 100644 index 000000000000..81720a7eb335 --- /dev/null +++ b/sci-physics/root/files/proofd.confd @@ -0,0 +1,12 @@ +# conf.d file for proof daemon +# +# Please refer to the proofd(1) man(1) page for more information on +# command line parameters. +# +PROOFD_OPTS= + +# Specify your base of your PROOF directory here. If left blank, it +# will use the system default (e.g., /usr/share/root/proof). +# Note, however, that ROOT recommends that this directory is shared (via +# NFS or similar) among all the nodes of the cluster. +PROOF_DIR= diff --git a/sci-physics/root/files/proofd.initd b/sci-physics/root/files/proofd.initd new file mode 100644 index 000000000000..aee1b029b95e --- /dev/null +++ b/sci-physics/root/files/proofd.initd @@ -0,0 +1,26 @@ +#!/sbin/runscript +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +depend() { + need root-file-server + use logger +} + +start() { + ebegin "Starting parallel ROOT facility server" + start-stop-daemon --start --quiet \ + --pidfile /var/run/proofd.pid \ + --exec /usr/bin/proofd -- ${PROOFD_OPTS} ${PROOF_DIR} + pidof /usr/bin/proofd > /var/run/proofd.pid + eend $? +} + +stop() { + ebegin "Stopping parallel ROOT facility server" + start-stop-daemon --stop --quiet \ + --pidfile /var/run/proofd.pid \ + --exec /usr/bin/proofd + eend $? +} diff --git a/sci-physics/root/files/root-5.28.00b-asneeded.patch b/sci-physics/root/files/root-5.28.00b-asneeded.patch new file mode 100644 index 000000000000..b845247e11c0 --- /dev/null +++ b/sci-physics/root/files/root-5.28.00b-asneeded.patch @@ -0,0 +1,20 @@ +--- root.orig/configure 2010-12-20 07:17:54.000000000 +0000 ++++ root/configure 2010-12-20 07:16:05.000000000 +0000 +@@ -709,7 +709,7 @@ + cat <<EOF > conftest.mk + include ${ac_srcdir}/config/Makefile.${arch} + conftest: conftest.c +- \$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@ ++ \$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib -o \$@ + + conftest.c: + echo "int main() { return 0; }" > \$@ +@@ -723,7 +723,7 @@ + cat <<EOF > conftest.mk + include ${ac_srcdir}/config/Makefile.${arch} + conftest:conftest.c +- \$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@ ++ \$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib -o \$@ + + conftest.c: + echo "extern int $linksymbol (); " > \$@ diff --git a/sci-physics/root/files/root-5.28.00b-glibc212.patch b/sci-physics/root/files/root-5.28.00b-glibc212.patch new file mode 100644 index 000000000000..a365431396f5 --- /dev/null +++ b/sci-physics/root/files/root-5.28.00b-glibc212.patch @@ -0,0 +1,11 @@ +--- root.orig/net/auth/src/TAFS.cxx 2010-09-14 03:22:22.647915854 +0400 ++++ root/net/auth/src/TAFS.cxx 2010-09-14 03:22:39.034599899 +0400 +@@ -11,6 +11,7 @@ + + #ifndef WIN32 + # include <unistd.h> ++# include <sys/stat.h> + #else + # define ssize_t int + # include <io.h> + diff --git a/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch b/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch new file mode 100644 index 000000000000..732431943a88 --- /dev/null +++ b/sci-physics/root/files/root-5.28.00b-prop-ldflags.patch @@ -0,0 +1,13 @@ +diff -Naur root.orig/config/Makefile.in root/config/Makefile.in +--- root.orig/config/Makefile.in 2010-12-14 17:20:26.000000000 +0300 ++++ root/config/Makefile.in 2010-12-17 22:33:34.902161458 +0300 +@@ -27,7 +27,7 @@ + + EXTRA_CFLAGS := -Iinclude @cflags@ + EXTRA_CXXFLAGS := -Iinclude @cflags@ +-EXTRA_LDFLAGS := @ldflags@ ++EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) + WINRTDEBUG := @winrtdebug@ + + GLBPATCHFLAGS := @glbpatchcflags@ + diff --git a/sci-physics/root/files/root-5.28.00b-unuran.patch b/sci-physics/root/files/root-5.28.00b-unuran.patch new file mode 100644 index 000000000000..76422daed54b --- /dev/null +++ b/sci-physics/root/files/root-5.28.00b-unuran.patch @@ -0,0 +1,39 @@ +diff -ur root-trunk.orig/math/unuran/Module.mk root-trunk/math/unuran/Module.mk +--- root.orig/math/unuran/Module.mk 2010-11-25 20:41:32.000000000 +0100 ++++ root/math/unuran/Module.mk 2010-11-25 20:51:47.190704977 +0100 +@@ -20,7 +20,7 @@ + UNURANETAG := $(call stripsrc,$(UNURANDIRS)/headers.d) + UNRCFG := $(call stripsrc,$(UNURANDIRS)/$(UNRVERS)/config.h) + +-UNRTARCONTENT:=$(subst $(UNRVERS),$(UNRDIRS),$(shell mkdir -p $(UNRDIR); cd $(UNRDIR); gunzip -c $(UNRSRCS) | tar tf -)) ++UNRTARCONTENT:= + UNRS := $(filter %.c, \ + $(filter $(UNRDIRS)/src/utils/%,$(UNRTARCONTENT)) \ + $(filter $(UNRDIRS)/src/methods/%,$(UNRTARCONTENT)) \ +@@ -69,10 +69,9 @@ + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) + +-include/%.h: $(UNURANDIRI)/%.h $(UNURANETAG) ++include/%.h: $(UNURANDIRI)/%.h + cp $< $@ + +-$(UNURANDEP): $(UNRCFG) + $(UNRS): $(UNURANETAG) + + $(UNURANETAG): $(UNRSRCS) +@@ -125,12 +124,12 @@ + GNUMAKE=$(MAKE) ./configure CC="$$ACC" \ + CFLAGS="$$ACFLAGS"); + +-$(UNURANLIB): $(UNRCFG) $(UNRO) $(UNURANO) $(UNURANDO) $(ORDER_) \ ++$(UNURANLIB): $(UNURANO) $(UNURANDO) $(ORDER_) \ + $(MAINLIBS) $(UNURANLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libUnuran.$(SOEXT) $@ \ + "$(UNURANO) $(UNURANDO)" \ +- "$(UNURANLIBEXTRA) $(UNRO)" ++ "$(UNURANLIBEXTRA) -lunuran" + + $(UNURANDS): $(UNRINIT) $(UNURANDH1) $(UNURANL) $(ROOTCINTTMPDEP) + $(MAKEDIR) diff --git a/sci-physics/root/files/root-5.32.00-afs.patch b/sci-physics/root/files/root-5.32.00-afs.patch new file mode 100644 index 000000000000..2bf31798e6e0 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-afs.patch @@ -0,0 +1,33 @@ +--- root/net/auth/src/TAFS.cxx.orig 2011-12-04 00:56:29.405007770 +0400 ++++ root/net/auth/src/TAFS.cxx 2011-12-04 00:56:35.534709259 +0400 +@@ -138,7 +138,7 @@ + } else { + if (isatty(0) != 0 && isatty(1) != 0) { + Gl_config("noecho", 1); +- pw = Getline((char *) prompt.Data()); ++ pw = const_cast<char *>( Getline((char *) prompt.Data()) ); + Gl_config("noecho", 0); + } else { + Warning("TAFS", "not tty: cannot prompt for passwd: failure"); +--- root/core/clib/src/strlcat.c.orig 2011-12-04 01:49:26.495179487 +0400 ++++ root/core/clib/src/strlcat.c 2011-12-04 01:50:41.407524763 +0400 +@@ -38,7 +38,7 @@ + * Returns strlen(src) + MIN(siz, strlen(initial dst)). + * If retval >= siz, truncation occurred. + */ +-size_t ++size_t __attribute__((weak)) + strlcat(char *dst, const char *src, size_t siz) + { + register char *d = dst; +--- root/core/clib/src/strlcpy.c.orig 2011-12-04 01:49:34.329797251 +0400 ++++ root/core/clib/src/strlcpy.c 2011-12-04 01:50:49.051151843 +0400 +@@ -36,7 +36,7 @@ + * will be copied. Always NUL terminates (unless siz == 0). + * Returns strlen(src); if retval >= siz, truncation occurred. + */ +-size_t ++size_t __attribute__((weak)) + strlcpy(char *dst, const char *src, size_t siz) + { + register char *d = dst; diff --git a/sci-physics/root/files/root-5.32.00-cfitsio.patch b/sci-physics/root/files/root-5.32.00-cfitsio.patch new file mode 100644 index 000000000000..853c3f39f207 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-cfitsio.patch @@ -0,0 +1,13 @@ +--- configure.orig 2012-01-19 23:44:44.127607638 +0100 ++++ configure 2012-01-20 00:19:20.420652913 +0100 +@@ -3435,9 +3435,7 @@ + cfitsioinc=$found_hdr + cfitsioincdir=$found_dir + +- # At this time, libcfitsio.a should always be prefered over .so, +- # to avoid forcing users to install cfitsio. +- check_library "libcfitsio cfitsio" "no" "$cfitsiolibdir" \ ++ check_library "libcfitsio cfitsio" "yes" "$cfitsiolibdir" \ + $CFITSIO ${CFITSIO:+$CFITSIO/lib} ${CFITSIO:+$CFITSIO/.libs} \ + ${finkdir:+$finkdir/lib} \ + /usr/local/lib /usr/lib /opt/cfitsio/lib diff --git a/sci-physics/root/files/root-5.32.00-chklib64.patch b/sci-physics/root/files/root-5.32.00-chklib64.patch new file mode 100644 index 000000000000..979220f02f35 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-chklib64.patch @@ -0,0 +1,24 @@ +bug fix for #406817 +--- configure.orig 2012-02-29 19:46:41.000000000 +0400 ++++ configure 2012-03-22 03:28:43.458968696 +0400 +@@ -441,14 +441,13 @@ + fi + else + if file $filearg $chklib64 | grep 'ASCII' > /dev/null 2>& 1 ; then +- check_link $chklib64 +- ret=$link_result +- else +- logmsg " file $filearg $chklib64 | grep '64-bit'" +- if file $filearg $chklib64 | grep '64-bit' > /dev/null 2>& 1 ; then +- ret=1 +- fi ++ # get real binary .so name from .so ld script ++ chklib64=$(gawk '($1 == "GROUP") { print $3 }' $chklib64) + fi ++ logmsg " file $filearg $chklib64 | grep '64-bit'" ++ if file $filearg $chklib64 | grep '64-bit' > /dev/null 2>& 1 ; then ++ ret=1 ++ fi + fi + logmsg " result: $ret" + if test $ret -eq 1 ; then diff --git a/sci-physics/root/files/root-5.32.00-dotfont.patch b/sci-physics/root/files/root-5.32.00-dotfont.patch new file mode 100644 index 000000000000..85d6dea7655e --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-dotfont.patch @@ -0,0 +1,58 @@ +--- root/html/src/TClassDocOutput.cxx.orig 2012-05-25 16:18:10.000000000 +0400 ++++ root/html/src/TClassDocOutput.cxx 2012-05-29 21:36:53.813593012 +0400 +@@ -625,7 +625,7 @@ + << "size=\"8,10\";" << endl + << "ratio=auto;" << endl + << "margin=0;" << endl +- << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << endl ++ << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << endl + << "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << endl; + + std::stringstream ssDep; +@@ -704,7 +704,7 @@ + outdot << ";" << endl; + } else if (writeAndMoreFor) { + outdot << " \"...andmore" << writeAndMoreFor->GetName() +- << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << endl; ++ << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << endl; + } + } + if (!levelExists) break; +@@ -733,7 +733,7 @@ + << "ranksep=0.1;" << endl + << "nodesep=0;" << endl + << "margin=0;" << endl; +- outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << endl; ++ outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << endl; + + std::stringstream ssDep; + const int numColumns = 3; +@@ -939,7 +939,7 @@ + << "ranksep=0;" << endl + << "nodesep=0;" << endl + << "size=\"8,10\";" << endl +- << "node [fontsize=20,shape=plaintext];" << endl; ++ << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << endl; + + for (std::list<std::string>::iterator iFile = listFilesToParse.begin(); + iFile != listFilesToParse.end(); ++iFile) { +@@ -999,7 +999,8 @@ + << "ranksep=0.7;" << endl + << "nodesep=0.3;" << endl + << "size=\"8,8\";" << endl +- << "ratio=compress;" << endl; ++ << "ratio=compress;" << endl ++ << "node [fontname=\"DejaVu Serif\"];" << endl; + + TString libs(fCurrentClass->GetSharedLibs()); + outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << endl; +@@ -1109,7 +1110,8 @@ + + dotout << "digraph G {" << endl + << "ratio=auto;" << endl +- << "rankdir=RL;" << endl; ++ << "rankdir=RL;" << endl ++ << "node [fontname=\"DejaVu Serif\"];" << endl; + + // loop on all classes + TClassDocInfo* cdi = 0; diff --git a/sci-physics/root/files/root-5.32.00-explicit-functions.patch b/sci-physics/root/files/root-5.32.00-explicit-functions.patch new file mode 100644 index 000000000000..570d61e680fc --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-explicit-functions.patch @@ -0,0 +1,18 @@ +--- root/io/io/Module.mk.orig 2012-02-29 19:46:38.000000000 +0400 ++++ root/io/io/Module.mk 2012-03-09 02:29:19.905665572 +0400 +@@ -67,15 +67,5 @@ + distclean:: distclean-$(MODNAME) + + ##### extra rules ###### +-#ifeq ($(GCC_VERS_FULL),gcc-4.4.0) +-ifeq ($(GCC_VERS),gcc-4.4) +-ifneq ($(filter -O%,$(OPT)),) + $(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION +-endif +-endif +-ifeq ($(GCC_VERS),gcc-4.5) +-ifneq ($(filter -O%,$(OPT)),) + $(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION +-endif +-endif +- diff --git a/sci-physics/root/files/root-5.32.00-htmldoc.patch b/sci-physics/root/files/root-5.32.00-htmldoc.patch new file mode 100644 index 000000000000..3b80b39cda49 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-htmldoc.patch @@ -0,0 +1,12 @@ +--- root/html/src/THtml.cxx.orig 2012-05-25 16:18:10.000000000 +0400 ++++ root/html/src/THtml.cxx 2012-05-29 19:22:40.810563296 +0400 +@@ -1913,6 +1913,9 @@ + void THtml::CreateStyleSheet() const { + // Write the default ROOT style sheet. + CopyFileFromEtcDir("ROOT.css"); ++ CopyFileFromEtcDir("info.png"); ++ CopyFileFromEtcDir("root-banner.png"); ++ CopyFileFromEtcDir("rootdrawing-logo.png"); + CopyFileFromEtcDir("shadowAlpha.png"); + CopyFileFromEtcDir("shadow.gif"); + } diff --git a/sci-physics/root/files/root-5.32.00-nobyte-compile.patch b/sci-physics/root/files/root-5.32.00-nobyte-compile.patch new file mode 100644 index 000000000000..179e5790cc36 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-nobyte-compile.patch @@ -0,0 +1,137 @@ +diff -Naur root.as-needed/Makefile root/Makefile +--- root.as-needed/Makefile 2011-07-10 10:42:49.758191296 +0400 ++++ root/Makefile 2011-07-10 10:43:21.493339703 +0400 +@@ -1167,10 +1167,7 @@ + if test "x$(RFLX_GRFLXPY)" != "x"; then \ + rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPY); \ + fi; \ +- if test "x$(RFLX_GRFLXPYC)" != "x"; then \ +- rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPYC); \ +- fi; \ +- if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \ ++ if test "x$(RFLX_GRFLXPY)" != "x"; then \ + dir=$(RFLX_GRFLXDD:lib/=); \ + while test "x$${dir}" != "x" && \ + test -d $(DESTDIR)$(LIBDIR)/$${dir} && \ +diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk +--- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 ++++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 +@@ -48,8 +48,6 @@ + ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) + $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ + endif +-ROOTPYC := $(ROOTPY:.py=.pyc) +-ROOTPYO := $(ROOTPY:.py=.pyo) + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) +@@ -68,10 +66,8 @@ + include/%.h: $(PYROOTDIRI)/%.h + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + +-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ ++$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ + $(ROOTLIBSDEP) $(PYTHONLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ +@@ -113,7 +109,7 @@ + + distclean-$(MODNAME): clean-$(MODNAME) + @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ +- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ ++ $(ROOTPY) $(PYROOTMAP) \ + $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) + + distclean:: distclean-$(MODNAME) +diff -Naur root.as-needed/build/package/debian/rules root/build/package/debian/rules +--- root.as-needed/build/package/debian/rules 2011-07-10 10:42:49.241549346 +0400 ++++ root/build/package/debian/rules 2011-07-10 10:48:06.989670589 +0400 +@@ -691,10 +691,6 @@ + -X$(SYSCONFDIR)/root/system.rootauthrc \ + -X$(SYSCONFDIR)/root/system.rootdaemonrc \ + -X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo \ + -X$(PREFIX)/lib/root/$(SOVERS)/cint7 \ + -X$(PREFIX)/include/root/Minuit2 + # $(foreach i, \ +diff -Naur root.as-needed/cint/cintex/Module.mk root/cint/cintex/Module.mk +--- root.as-needed/cint/cintex/Module.mk 2011-07-10 10:42:49.104889217 +0400 ++++ root/cint/cintex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -31,10 +31,6 @@ + CINTEXPY := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS)) + $(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@ + endif +-ifneq ($(BUILDPYTHON),no) +-CINTEXPYC := $(CINTEXPY:.py=.pyc) +-CINTEXPYO := $(CINTEXPY:.py=.pyo) +-endif + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH)) +@@ -86,8 +82,6 @@ + fi) + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + + $(CINTEXLIB): $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \ + $(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP) +diff -Naur root.as-needed/cint/reflex/Module.mk root/cint/reflex/Module.mk +--- root.as-needed/cint/reflex/Module.mk 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -48,9 +48,6 @@ + RFLX_GRFLXS := $(wildcard $(RFLX_GRFLXSD)/*.py) + RFLX_GRFLXPY := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS)) + RFLX_GRFLXPY += $(RFLX_GCCXMLPATHPY) +-ifneq ($(BUILDPYTHON),no) +-RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY)) +-endif + + RFLX_LIBDIR = $(LIBDIR) + +@@ -92,7 +89,7 @@ + + ALLEXECS += $(RFLX_GENMAPX) + +-POSTBIN += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++POSTBIN += $(RFLX_GRFLXPY) + + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \ +@@ -122,8 +119,6 @@ + mkdir -p lib/python/genreflex; fi ) + cp $< $@ + +-$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py +- @python -c 'import py_compile; py_compile.compile( "$<" )' + + $(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap + +@@ -149,7 +144,7 @@ + $(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \ + -d $(REFLEXDICTLIBDEPM) -c $(REFLEXL) + +-all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY) + + clean-genreflex: + @rm -rf lib/python/genreflex +diff -Naur root.as-needed/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt +--- root.as-needed/cint/reflex/python/CMakeLists.txt 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/python/CMakeLists.txt 2011-07-10 10:43:21.496672876 +0400 +@@ -15,7 +15,7 @@ + ##################### sources #################### + + FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py) +-SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE) ++SET(GENREFLEX_SCRIPT PARENT_SCOPE) + + ##################### gccxmlpath #################### + diff --git a/sci-physics/root/files/root-5.34.05-nobyte-compile.patch b/sci-physics/root/files/root-5.34.05-nobyte-compile.patch new file mode 100644 index 000000000000..ec67a15887f6 --- /dev/null +++ b/sci-physics/root/files/root-5.34.05-nobyte-compile.patch @@ -0,0 +1,137 @@ +diff -Naur root.as-needed/Makefile root/Makefile +--- a/Makefile.orig 2013-02-15 02:27:56.000000000 +0400 ++++ b/Makefile 2013-02-23 02:22:14.556465852 +0400 +@@ -1258,10 +1258,7 @@ + for lib in $(RFLX_GRFLXPY); do \ + rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \ + done; \ +- for lib in $(RFLX_GRFLXPYC); do \ +- rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \ +- done; \ +- if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \ ++ if test "x$(RFLX_GRFLXPY)" != "x"; then \ + dir=$(subst lib/,,$(RFLX_GRFLXDD)); \ + while test "x$${dir}" != "x" && \ + test -d $(DESTDIR)$(LIBDIR)/$${dir} && \ +diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk +--- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 ++++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 +@@ -48,8 +48,6 @@ + ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) + $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ + endif +-ROOTPYC := $(ROOTPY:.py=.pyc) +-ROOTPYO := $(ROOTPY:.py=.pyo) + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) +@@ -68,10 +66,8 @@ + include/%.h: $(PYROOTDIRI)/%.h + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + +-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ ++$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ + $(ROOTLIBSDEP) $(PYTHONLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ +@@ -113,7 +109,7 @@ + + distclean-$(MODNAME): clean-$(MODNAME) + @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ +- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ ++ $(ROOTPY) $(PYROOTMAP) \ + $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) + + distclean:: distclean-$(MODNAME) +diff -Naur root.as-needed/build/package/debian/rules root/build/package/debian/rules +--- root.as-needed/build/package/debian/rules 2011-07-10 10:42:49.241549346 +0400 ++++ root/build/package/debian/rules 2011-07-10 10:48:06.989670589 +0400 +@@ -691,10 +691,6 @@ + -X$(SYSCONFDIR)/root/system.rootauthrc \ + -X$(SYSCONFDIR)/root/system.rootdaemonrc \ + -X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo \ + -X$(PREFIX)/lib/root/$(SOVERS)/cint7 \ + -X$(PREFIX)/include/root/Minuit2 + # $(foreach i, \ +diff -Naur root.as-needed/cint/cintex/Module.mk root/cint/cintex/Module.mk +--- root.as-needed/cint/cintex/Module.mk 2011-07-10 10:42:49.104889217 +0400 ++++ root/cint/cintex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -31,10 +31,6 @@ + CINTEXPY := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS)) + $(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@ + endif +-ifneq ($(BUILDPYTHON),no) +-CINTEXPYC := $(CINTEXPY:.py=.pyc) +-CINTEXPYO := $(CINTEXPY:.py=.pyo) +-endif + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH)) +@@ -86,8 +82,6 @@ + fi) + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + + $(CINTEXLIB): $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \ + $(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP) +diff -Naur root.as-needed/cint/reflex/Module.mk root/cint/reflex/Module.mk +--- root.as-needed/cint/reflex/Module.mk 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -48,9 +48,6 @@ + RFLX_GRFLXS := $(wildcard $(RFLX_GRFLXSD)/*.py) + RFLX_GRFLXPY := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS)) + RFLX_GRFLXPY += $(RFLX_GCCXMLPATHPY) +-ifneq ($(BUILDPYTHON),no) +-RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY)) +-endif + + RFLX_LIBDIR = $(LIBDIR) + +@@ -92,7 +89,7 @@ + + ALLEXECS += $(RFLX_GENMAPX) + +-POSTBIN += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++POSTBIN += $(RFLX_GRFLXPY) + + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \ +@@ -122,8 +119,6 @@ + mkdir -p lib/python/genreflex; fi ) + cp $< $@ + +-$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py +- @python -c 'import py_compile; py_compile.compile( "$<" )' + + $(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap + +@@ -149,7 +144,7 @@ + $(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \ + -d $(REFLEXDICTLIBDEPM) -c $(REFLEXL) + +-all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY) + + clean-genreflex: + @rm -rf lib/python/genreflex +diff -Naur root.as-needed/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt +--- root.as-needed/cint/reflex/python/CMakeLists.txt 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/python/CMakeLists.txt 2011-07-10 10:43:21.496672876 +0400 +@@ -15,7 +15,7 @@ + ##################### sources #################### + + FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py) +-SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE) ++SET(GENREFLEX_SCRIPT PARENT_SCOPE) + + ##################### gccxmlpath #################### + diff --git a/sci-physics/root/files/root-5.34.13-desktop.patch b/sci-physics/root/files/root-5.34.13-desktop.patch new file mode 100644 index 000000000000..7d47bcf7ce45 --- /dev/null +++ b/sci-physics/root/files/root-5.34.13-desktop.patch @@ -0,0 +1,12 @@ +diff --git a/etc/root.desktop b/etc/root.desktop +index ca38211..688ecfa 100644 +--- a/etc/root.desktop ++++ b/etc/root.desktop +@@ -8,5 +8,5 @@ Name[de]=ROOT + Comment=An object-oriented data analysis framework + Comment[de]=Ein objektorientiertes Framework zur Datenanalyse + StartupNotify=true +-MimeType=application/x-root;text/x-c++src +-Categories=Science;Development;Application; ++MimeType=application/x-root;text/x-c++src; ++Categories=Science;Development; diff --git a/sci-physics/root/files/root-5.34.13-unuran.patch b/sci-physics/root/files/root-5.34.13-unuran.patch new file mode 100644 index 000000000000..8262313184b5 --- /dev/null +++ b/sci-physics/root/files/root-5.34.13-unuran.patch @@ -0,0 +1,40 @@ +diff --git a/math/unuran/Module.mk b/math/unuran/Module.mk +index 00a530b..7cd22dc 100644 +--- a/math/unuran/Module.mk ++++ b/math/unuran/Module.mk +@@ -31,7 +31,7 @@ UNRS := $(wildcard $(UNRDIRS)/src/utils/*.c) \ + $(wildcard $(UNRDIRS)/src/uniform/*.c) \ + $(wildcard $(UNRDIRS)/src/urng/*.c) + else +-UNRTARCONTENT:=$(subst $(UNRVERS),$(UNRDIRS),$(shell mkdir -p $(UNRDIR); cd $(UNRDIR); gunzip -c $(UNRSRCS) | tar tf -)) ++UNRTARCONTENT:= + UNRS := $(filter %.c, \ + $(filter $(UNRDIRS)/src/utils/%,$(UNRTARCONTENT)) \ + $(filter $(UNRDIRS)/src/methods/%,$(UNRTARCONTENT)) \ +@@ -81,10 +81,9 @@ INCLUDEFILES += $(UNURANDEP) + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) + +-include/%.h: $(UNURANDIRI)/%.h $(UNURANETAG) ++include/%.h: $(UNURANDIRI)/%.h + cp $< $@ + +-$(UNURANDEP): $(UNRCFG) + $(UNRS): $(UNURANETAG) + + $(UNURANETAG): $(UNRSRCS) +@@ -137,12 +136,12 @@ $(UNRCFG): $(UNURANETAG) + GNUMAKE=$(MAKE) ./configure CC="$$ACC" \ + CFLAGS="$$ACFLAGS"); + +-$(UNURANLIB): $(UNRCFG) $(UNRO) $(UNURANO) $(UNURANDO) $(ORDER_) \ ++$(UNURANLIB): $(UNURANO) $(UNURANDO) $(ORDER_) \ + $(MAINLIBS) $(UNURANLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libUnuran.$(SOEXT) $@ \ + "$(UNURANO) $(UNURANDO)" \ +- "$(UNURANLIBEXTRA) $(UNRO)" ++ "$(UNURANLIBEXTRA) -lunuran" + + $(UNURANDS): $(UNRINIT) $(UNURANDH1) $(UNURANL) $(ROOTCINTTMPDEP) + $(MAKEDIR) diff --git a/sci-physics/root/files/root-5.34.26-ldflags.patch b/sci-physics/root/files/root-5.34.26-ldflags.patch new file mode 100644 index 000000000000..b81dbb5edb00 --- /dev/null +++ b/sci-physics/root/files/root-5.34.26-ldflags.patch @@ -0,0 +1,19 @@ +commit 3c8bc686abf57e7e2037c4c191cb63a1a5172b5b +Author: Andrew Savchenko <bircoph@gmail.com> +Date: Sun Feb 22 03:45:21 2015 +0300 + + root-5.32.00-prop-flags.patch -> root-5.34.26-prop-flags.patch + +diff --git a/config/Makefile.in b/config/Makefile.in +index 89674e7..91d25b9 100644 +--- a/config/Makefile.in ++++ b/config/Makefile.in +@@ -29,7 +29,7 @@ EXTRA_CFLAGS := -Iinclude @cflags@ + USERCONF_CFLAGS:= @usercflags@ + EXTRA_CXXFLAGS := -Iinclude @cflags@ + USERCONF_CXXFLAGS:= @usercxxflags@ +-EXTRA_LDFLAGS := @ldflags@ ++EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) + WERROR := @werror@ + WINRTDEBUG := @winrtdebug@ + diff --git a/sci-physics/root/files/root-6.00.01-dotfont.patch b/sci-physics/root/files/root-6.00.01-dotfont.patch new file mode 100644 index 000000000000..6c765f75a505 --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-dotfont.patch @@ -0,0 +1,58 @@ +--- root/html/src/TClassDocOutput.cxx.orig 2012-06-08 02:13:51.000000000 +0400 ++++ root/html/src/TClassDocOutput.cxx 2012-06-08 02:34:45.705436577 +0400 +@@ -625,7 +625,7 @@ + << "size=\"8,10\";" << std::endl + << "ratio=auto;" << std::endl + << "margin=0;" << std::endl +- << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << std::endl ++ << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << std::endl + << "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << std::endl; + + std::stringstream ssDep; +@@ -704,7 +704,7 @@ + outdot << ";" << std::endl; + } else if (writeAndMoreFor) { + outdot << " \"...andmore" << writeAndMoreFor->GetName() +- << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << std::endl; ++ << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << std::endl; + } + } + if (!levelExists) break; +@@ -733,7 +733,7 @@ + << "ranksep=0.1;" << std::endl + << "nodesep=0;" << std::endl + << "margin=0;" << std::endl; +- outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << std::endl; ++ outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << std::endl; + + std::stringstream ssDep; + const int numColumns = 3; +@@ -939,7 +939,7 @@ + << "ranksep=0;" << std::endl + << "nodesep=0;" << std::endl + << "size=\"8,10\";" << std::endl +- << "node [fontsize=20,shape=plaintext];" << std::endl; ++ << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << std::endl; + + for (std::list<std::string>::iterator iFile = listFilesToParse.begin(); + iFile != listFilesToParse.end(); ++iFile) { +@@ -999,7 +999,8 @@ + << "ranksep=0.7;" << std::endl + << "nodesep=0.3;" << std::endl + << "size=\"8,8\";" << std::endl +- << "ratio=compress;" << std::endl; ++ << "ratio=compress;" << std::endl ++ << "node [fontname=\"DejaVu Serif\"];" << std::endl; + + TString libs(fCurrentClass->GetSharedLibs()); + outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << std::endl; +@@ -1109,7 +1110,8 @@ + + dotout << "digraph G {" << std::endl + << "ratio=auto;" << std::endl +- << "rankdir=RL;" << std::endl; ++ << "rankdir=RL;" << std::endl ++ << "node [fontname=\"DejaVu Serif\"];" << std::endl; + + // loop on all classes + TClassDocInfo* cdi = 0; diff --git a/sci-physics/root/files/root-6.00.01-geocad.patch b/sci-physics/root/files/root-6.00.01-geocad.patch new file mode 100644 index 000000000000..2742a74bd0eb --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-geocad.patch @@ -0,0 +1,15 @@ +diff --git a/geom/geocad/inc/TGeoToOCC.h b/geom/geocad/inc/TGeoToOCC.h +index 892f225..86eb9e1 100644 +--- a/geom/geocad/inc/TGeoToOCC.h ++++ b/geom/geocad/inc/TGeoToOCC.h +@@ -13,8 +13,10 @@ + #define ROOT_TGeoToOCC + + //Cascade ++#define Printf Printf_opencascade + #include <TopoDS_Shape.hxx> + #include <TopoDS_Wire.hxx> ++#undef Printf + + //Root + #ifndef ROOT_TGeoXtru diff --git a/sci-physics/root/files/root-6.00.01-llvm.patch b/sci-physics/root/files/root-6.00.01-llvm.patch new file mode 100644 index 000000000000..c6abb353ee64 --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-llvm.patch @@ -0,0 +1,13 @@ +diff --git a/interpreter/llvm/src/Makefile.config.in b/interpreter/llvm/src/Makefile.config.in +index 7633be2..c8756b1 100644 +--- a/interpreter/llvm/src/Makefile.config.in ++++ b/interpreter/llvm/src/Makefile.config.in +@@ -170,6 +170,8 @@ CXXFLAGS += @CXXFLAGS@ + + # Linker flags. + LDFLAGS += @LDFLAGS@ ++NOUNDEF := -Wl,--no-undefined ++LDFLAGS := $(filter-out $(NOUNDEF),$(LDFLAGS)) + + # Path to the library archiver program. + AR_PATH = @AR@ diff --git a/sci-physics/root/files/root-6.00.01-nobyte-compile.patch b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch new file mode 100644 index 000000000000..aa58f20686dc --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch @@ -0,0 +1,33 @@ +diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk +--- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 ++++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 +@@ -48,8 +48,6 @@ + ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) + $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ + endif +-ROOTPYC := $(ROOTPY:.py=.pyc) +-ROOTPYO := $(ROOTPY:.py=.pyo) + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) +@@ -68,10 +66,8 @@ + include/%.h: $(PYROOTDIRI)/%.h + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + +-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ ++$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ + $(ROOTLIBSDEP) $(PYTHONLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ +@@ -113,7 +109,7 @@ + + distclean-$(MODNAME): clean-$(MODNAME) + @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ +- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ ++ $(ROOTPY) $(PYROOTMAP) \ + $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) + + distclean:: distclean-$(MODNAME) diff --git a/sci-physics/root/files/root-6.00.01-prop-flags.patch b/sci-physics/root/files/root-6.00.01-prop-flags.patch new file mode 100644 index 000000000000..3a1002478902 --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-prop-flags.patch @@ -0,0 +1,17 @@ +diff --git a/config/Makefile.in b/config/Makefile.in +index dd89044..4fc7de3 100644 +--- a/config/Makefile.in ++++ b/config/Makefile.in +@@ -64,9 +64,9 @@ HOST := @host@ + USECONFIG := @useconfig@ + MKLIBOPTIONS := @mkliboption@ + +-EXTRA_CFLAGS := -Iinclude @cflags@ +-EXTRA_CXXFLAGS := -Iinclude @cflags@ +-EXTRA_LDFLAGS := @ldflags@ ++EXTRA_CFLAGS := -Iinclude @cflags@ $(CFLAGS) ++EXTRA_CXXFLAGS := -Iinclude @cflags@ $(CXXFLAGS) ++EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) + WERROR := @werror@ + WINRTDEBUG := @winrtdebug@ + CTORSINITARRAY := @ctorsinitarray@ diff --git a/sci-physics/root/files/root-6.02.05-xrootd4.patch b/sci-physics/root/files/root-6.02.05-xrootd4.patch new file mode 100644 index 000000000000..0b4a4bef0f2e --- /dev/null +++ b/sci-physics/root/files/root-6.02.05-xrootd4.patch @@ -0,0 +1,11 @@ +https://sft.its.cern.ch/jira/browse/ROOT-6998 +--- root-6.02.05/net/netxng/src/TNetXNGFile.cxx.orig 2015-02-09 11:59:47.000000000 +0300 ++++ root-6.02.05/net/netxng/src/TNetXNGFile.cxx 2015-04-05 11:32:31.893127758 +0300 +@@ -28,6 +28,7 @@ + #include <XrdCl/XrdClFile.hh> + #include <XrdCl/XrdClXRootDResponses.hh> + #include <XrdCl/XrdClDefaultEnv.hh> ++#include <XrdVersion.hh> + #include <iostream> + + //------------------------------------------------------------------------------ diff --git a/sci-physics/root/files/rootd.confd b/sci-physics/root/files/rootd.confd new file mode 100644 index 000000000000..7516b8c9b6dd --- /dev/null +++ b/sci-physics/root/files/rootd.confd @@ -0,0 +1,8 @@ +# conf.d file for root daemon + +# User to run as (default is `rootd') +ROOTD_USER="rootd" + +# Please refer to the rootd(1) man(1) page for more information on +# command line parameters. +ROOTD_OPTS="" diff --git a/sci-physics/root/files/rootd.initd b/sci-physics/root/files/rootd.initd new file mode 100644 index 000000000000..4961ad56380f --- /dev/null +++ b/sci-physics/root/files/rootd.initd @@ -0,0 +1,28 @@ +#!/sbin/runscript +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +depend() { + need net + use logger + provide root-file-server +} + +start() { + ebegin "Starting ROOT file server" + pid=$(start-stop-daemon --start --quiet --user ${ROOTD_USER} \ + --pidfile /var/run/rootd.pid \ + --exec /usr/bin/rootd -- ${ROOTD_OPTS}) + retval=$? + echo ${ROOTD_PID} > /var/run/rootd.pid + eend ${retval} +} + +stop() { + ebegin "Stopping ROOT file server" + start-stop-daemon --stop --quiet \ + --pidfile /var/run/rootd.pid \ + --exec /usr/bin/rootd + eend $? +} diff --git a/sci-physics/root/metadata.xml b/sci-physics/root/metadata.xml new file mode 100644 index 000000000000..2d5f75aecc7c --- /dev/null +++ b/sci-physics/root/metadata.xml @@ -0,0 +1,35 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer> + <email>bircoph@gentoo.org</email> + <name>Andrew Savchenko</name> +</maintainer> +<herd>sci-physics</herd> +<longdescription lang="en"> + ROOT Object Oriented Technologies is an object oriented data + analysis framework written in C++ by the CERN. Widely used in + high energy physics, but also in other data analysis applications. It + contains the CINT C/C++ interpreter and many classes such as + statistics, serialization, optimization, linear algebra, graphics, + GUI toolkit, and a complete visualization framework. +</longdescription> +<use> + <flag name="c++11"> Build ROOT using the C++11 standard</flag> + <flag name="c++14"> Build ROOT using the C++14 standard</flag> + <flag name="clarens"> Build the Clarens and PEAC plug-ins, to use in a GRID enabled analysis</flag> + <flag name="fits">Support for images and data from FITS files with <pkg>sci-libs/cfitsio</pkg></flag> + <flag name="gdml">Enable GDML writer and reader</flag> + <flag name="geocad">Enable ROOT-CAD interface using <pkg>sci-libs/opencascade</pkg></flag> + <flag name="htmldoc">Generate html documentation</flag> + <flag name="http">Enable http server support including but not limited to fastcgi support</flag> + <flag name="math">Build all math related libraries plugins, needs <pkg>sci-libs/gsl</pkg> </flag> + <flag name="memstat">Build memory statistics library, helps to detect memory leaks</flag> + <flag name="pythia6">Build the interface for <pkg>sci-physics/pythia</pkg> version 6.x </flag> + <flag name="pythia8">Build the interface for <pkg>sci-physics/pythia</pkg> version 8.x </flag> + <flag name="reflex">Build the reflection database for the C++ interpreter</flag> + <flag name="shadow">Enable shadow authentication in rootd and proofd</flag> + <flag name="table">Build libTable contrib library</flag> + <flag name="xrootd">Build the interface for <pkg>net-libs/xrootd</pkg> </flag> +</use> +</pkgmetadata> diff --git a/sci-physics/root/root-5.32.03-r2.ebuild b/sci-physics/root/root-5.32.03-r2.ebuild new file mode 100644 index 000000000000..7b03c47ffd02 --- /dev/null +++ b/sci-physics/root/root-5.32.03-r2.ebuild @@ -0,0 +1,378 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +PYTHON_DEPEND="python? 2" + +if [[ ${PV} == "9999" ]] ; then + _SVN=subversion + ESVN_REPO_URI="https://root.cern.ch/svn/root/trunk" + ESVN_OPTIONS="--non-interactive --trust-server-cert" + SRC_URI="" + KEYWORDS="" +else + SRC_URI="ftp://root.cern.ch/${PN}/${PN}_v${PV}.source.tar.gz" + KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +fi + +inherit elisp-common eutils fdo-mime fortran-2 multilib python toolchain-funcs user ${_SVN} + +ROOFIT_DOC_PV=2.91-33 +TMVA_DOC_PV=4.03 +PATCH_PV=5.28.00b +PATCH_PV2=5.32.00 + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="http://root.cern.ch/" +SRC_URI="${SRC_URI} + doc? ( ftp://root.cern.ch/${PN}/doc/ROOTUsersGuide.pdf + math? ( + ftp://root.cern.ch/${PN}/doc/RooFit_Users_Manual_${ROOFIT_DOC_PV}.pdf + http://tmva.sourceforge.net/docu/TMVAUsersGuide.pdf -> TMVAUsersGuide-v${TMVA_DOC_PV}.pdf ) + htmldoc? ( + http://root.cern.ch/drupal/sites/default/files/rootdrawing-logo.png + http://root.cern.ch/drupal/sites/all/themes/newsflash/images/blue/root-banner.png + http://root.cern.ch/drupal/sites/all/themes/newsflash/images/info.png ) )" + +SLOT="0" +LICENSE="LGPL-2.1" +IUSE="+X afs avahi clarens doc emacs examples fits fftw graphviz htmldoc kerberos + ldap +math mpi mysql odbc +opengl openmp oracle postgres prefix pythia6 + pythia8 python qt4 +reflex ruby ssl xft xinetd xml xrootd" + +CDEPEND=" + app-arch/xz-utils + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre + media-fonts/dejavu + media-libs/freetype + media-libs/giflib + media-libs/libpng:0 + media-libs/tiff:0 + sys-libs/zlib + virtual/jpeg + virtual/shadow + X? ( + media-libs/ftgl + media-libs/glew + x11-libs/libX11 + x11-libs/libXext + x11-libs/libXpm + || ( + >=media-libs/libafterimage-1.20[gif,jpeg,png,tiff] + >=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps ) + qt4? ( + dev-qt/qtgui:4 + dev-qt/qtopengl:4 + dev-qt/qt3support:4 + dev-qt/qtsvg:4 + dev-qt/qtwebkit:4 + dev-qt/qtxmlpatterns:4 ) + xft? ( x11-libs/libXft ) + ) + afs? ( net-fs/openafs ) + avahi? ( net-dns/avahi ) + clarens? ( dev-libs/xmlrpc-c[curl] ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio ) + fftw? ( sci-libs/fftw:3.0 ) + graphviz? ( media-gfx/graphviz ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap ) + math? ( sci-libs/gsl sci-mathematics/unuran mpi? ( virtual/mpi ) ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) ) + oracle? ( dev-db/oracle-instantclient-basic ) + postgres? ( dev-db/postgresql ) + pythia6? ( sci-physics/pythia:6 ) + pythia8? ( sci-physics/pythia:8 ) + ruby? ( + dev-lang/ruby + dev-ruby/rubygems ) + ssl? ( dev-libs/openssl ) + xml? ( dev-libs/libxml2 ) + xrootd? ( net-libs/xrootd )" + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + reflex? ( dev-cpp/gccxml ) + xinetd? ( sys-apps/xinetd )" + +PDEPEND="htmldoc? ( ~app-doc/root-docs-${PV} )" + +REQUIRED_USE=" + !X? ( !opengl !qt4 !xft ) + mpi? ( math !openmp ) + openmp? ( math !mpi )" + +S="${WORKDIR}/${PN}" + +pkg_setup() { + fortran-2_pkg_setup + python_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "AliEn, castor, Chirp, dCache, gfal, gLite, Globus," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=/usr/$(get_libdir)\"" + echo + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + if use math; then + if use openmp; then + if [[ $(tc-getCC)$ == *gcc* ]] && ! tc-has-openmp; then + ewarn "You are using a gcc without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi +} + +src_prepare() { + epatch \ + "${FILESDIR}"/${PN}-${PATCH_PV}-prop-ldflags.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV}-asneeded.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV}-glibc212.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV}-unuran.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-afs.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-cfitsio.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-chklib64.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-explicit-functions.patch \ + "${FILESDIR}"/${PN}-${PATCH_PV2}-dotfont.patch + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -rf graf2d/asimage/src/libAfterImage || die + rm -rf graf3d/ftgl/{inc,src} || die + rm -rf graf2d/freetype/src || die + rm -rf graf3d/glew/{inc,src} || die + rm -rf core/pcre/src || die + rm -rf math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | xargs -0 rm -f || die + rm -rf core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # libungif is called libgif, + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:ungif:gif:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + # prefixify the configure script + sed -i \ + -e 's:/usr:${EPREFIX}/usr:g' \ + configure || die "prefixify configure failed" + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR + + # Make html docs self-consistent for offline work (based on Fedora spec) + if use htmldoc; then + epatch "${FILESDIR}"/${PN}-${PATCH_PV2}-htmldoc.patch + # make images local + sed 's!http://root.cern.ch/drupal/sites/all/themes/newsflash/images/blue/!!' \ + -i etc/html/ROOT.css || die "htmldoc sed failed" + sed 's!http://root.cern.ch/drupal/sites/all/themes/newsflash/images/!!' \ + -i etc/html/ROOT.css || die "htmldoc sed failed" + sed 's!http://root.cern.ch/drupal/sites/default/files/!!' \ + -i etc/html/header.html || die "htmldoc sed failed" + + cp "${DISTDIR}"/{rootdrawing-logo.png,root-banner.png,info.png} etc/html || + die "htmldoc preparation failed" + fi +} + +src_configure() { + # the configure script is not the standard autotools + ./configure \ + --prefix="${EPREFIX}"/usr \ + --etcdir="${EPREFIX}"/etc/root \ + --libdir="${EPREFIX}"/usr/$(get_libdir)/${PN} \ + --docdir="${EPREFIX}"/usr/share/doc/${PF} \ + --tutdir="${EPREFIX}"/usr/share/doc/${PF}/examples/tutorials \ + --testdir="${EPREFIX}"/usr/share/doc/${PF}/examples/tests \ + --with-cc=$(tc-getCC) \ + --with-cxx=$(tc-getCXX) \ + --with-f77=$(tc-getFC) \ + --with-ld=$(tc-getCXX) \ + --with-afs-shared=yes \ + --with-sys-iconpath="${EPREFIX}"/usr/share/pixmaps \ + --disable-builtin-afterimage \ + --disable-builtin-freetype \ + --disable-builtin-ftgl \ + --disable-builtin-glew \ + --disable-builtin-pcre \ + --disable-builtin-zlib \ + --disable-builtin-lzma \ + --disable-cling \ + --enable-astiff \ + --enable-exceptions \ + --enable-explicitlink \ + --enable-gdml \ + --enable-memstat \ + --enable-shadowpw \ + --enable-shared \ + --enable-soversion \ + --enable-table \ + --fail-on-missing \ + $(use_enable X x11) \ + $(use_enable X asimage) \ + $(use_enable afs) \ + $(use_enable avahi bonjour) \ + $(use_enable clarens) \ + $(use_enable clarens peac) \ + $(use_enable fits fitsio) \ + $(use_enable fftw fftw3) \ + $(use_enable graphviz gviz) \ + $(use_enable kerberos krb5) \ + $(use_enable ldap) \ + $(use_enable math gsl-shared) \ + $(use_enable math genvector) \ + $(use_enable math mathmore) \ + $(use_enable math minuit2) \ + $(use_enable math roofit) \ + $(use_enable math tmva) \ + $(use_enable math unuran) \ + $(use_enable mysql) \ + $(use_enable odbc) \ + $(use_enable opengl) \ + $(use_enable postgres pgsql) \ + $(use_enable prefix rpath) \ + $(use_enable pythia6) \ + $(use_enable pythia8) \ + $(use_enable python) \ + $(use_enable qt4 qt) \ + $(use_enable qt4 qtgsi) \ + $(use_enable reflex cintex) \ + $(use_enable reflex) \ + $(use_enable ruby) \ + $(use_enable ssl) \ + $(use_enable xft) \ + $(use_enable xml) \ + $(use_enable xrootd) \ + ${EXTRA_ECONF} \ + || die "configure failed" +} + +src_compile() { + emake OPT="${CXXFLAGS}" F77OPT="${FFLAGS}" + if use emacs; then + elisp-compile build/misc/*.el || die "elisp-compile failed" + fi +} + +doc_install() { + cd "${S}" + if use doc; then + einfo "Installing user's guides" + dodoc "${DISTDIR}"/ROOTUsersGuide.pdf + use math && dodoc \ + "${DISTDIR}"/RooFit_Users_Manual_${ROOFIT_DOC_PV}.pdf \ + "${DISTDIR}"/TMVAUsersGuide-v${TMVA_DOC_PV}.pdf + fi + + if use examples; then + # these should really be taken care of by the root make install + insinto /usr/share/doc/${PF}/examples/tutorials/tmva + doins -r tmva/test + else + rm -rf "${ED}"/usr/share/doc/${PF}/examples || die + fi +} + +daemon_install() { + cd "${S}" + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + sed -e 's,@prefix@,/usr,' \ + build/package/debian/root-system-bin.desktop.in > root.desktop + domenu root.desktop + doicon "${S}"/build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +src_install() { + emake DESTDIR="${D}" install + + echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/root" > 99root + use pythia8 && echo "PYTHIA8=${EPREFIX}/usr" >> 99root + use python && echo "PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/root" >> 99root + use ruby && echo "RUBYLIB=${EPREFIX}/usr/$(get_libdir)/root" >> 99root + doenvd 99root + + # The build system installs Emacs support unconditionally and in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -rf "${ED}"/usr/share/emacs + if use emacs; then + elisp-install ${PN} build/misc/*.{el,elc} || die "elisp-install failed" + fi + + doc_install + daemon_install + desktop_install + + # Cleanup of files either already distributed or unused on Gentoo + rm "${ED}"usr/share/doc/${PF}/{INSTALL,LICENSE,COPYING.CINT} || die + rm "${ED}"usr/share/root/fonts/LICENSE || die + pushd "${ED}"usr/$(get_libdir)/root/cint/cint/lib > /dev/null + rm -f posix/mktypes dll_stl/setup \ + G__* dll_stl/G__* dll_stl/rootcint_* posix/exten.o || die + rm -f "${ED}"usr/$(get_libdir)/root/cint/cint/include/makehpib || die + rm -f "${ED}"/etc/root/proof/*.sample || die + rm -rf "${ED}"/etc/root/daemons || die + popd > /dev/null + # these should be in PATH + mv "${ED}"etc/root/proof/utils/pq2/pq2* \ + "${ED}"usr/bin/ || die +} + +pkg_postinst() { + fdo-mime_desktop_database_update + use python && python_mod_optimize /usr/$(get_libdir)/root +} + +pkg_postrm() { + fdo-mime_desktop_database_update + use python && python_mod_cleanup /usr/$(get_libdir)/root +} diff --git a/sci-physics/root/root-5.34.26.ebuild b/sci-physics/root/root-5.34.26.ebuild new file mode 100644 index 000000000000..3ba947eccbb0 --- /dev/null +++ b/sci-physics/root/root-5.34.26.ebuild @@ -0,0 +1,453 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +if [[ ${PV} == "9999" ]] ; then + inherit git-r3 + EGIT_REPO_URI="http://root.cern.ch/git/root.git" +else + SRC_URI="ftp://root.cern.ch/${PN}/${PN}_v${PV}.source.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +PYTHON_COMPAT=( python2_7 ) + +inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ + toolchain-funcs user versionator + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="http://root.cern.ch/" + +SLOT="0/$(get_version_component_range 1-3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +IUSE="+X afs avahi c++11 c++14 doc emacs examples fits fftw + graphviz http kerberos ldap +math minimal mpi mysql odbc + +opengl openmp oracle postgres prefix pythia6 pythia8 + python qt4 +reflex ruby sqlite ssl xinetd xml xrootd" + +# TODO: add support for: davix +# TODO: unbundle: vdt + +REQUIRED_USE=" + !X? ( !minimal? ( !opengl !qt4 ) ) + mpi? ( math !openmp ) + openmp? ( math !mpi ) + python? ( ${PYTHON_REQUIRED_USE} ) +" + +CDEPEND=" + app-arch/xz-utils:0= + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/giflib:0= + media-libs/libpng:0= + media-libs/tiff:0= + sys-libs/zlib:0= + virtual/jpeg:0 + virtual/shadow + X? ( + media-libs/ftgl:0= + media-libs/glew:0= + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXpm:0= + !minimal? ( + || ( + media-libs/libafterimage:0=[gif,jpeg,png,tiff] + >=x11-wm/afterstep-2.2.11:0=[gif,jpeg,png,tiff] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) + qt4? ( + dev-qt/qtgui:4= + dev-qt/qtopengl:4= + dev-qt/qt3support:4= + dev-qt/qtsvg:4= + dev-qt/qtwebkit:4= + dev-qt/qtxmlpatterns:4= + ) + x11-libs/libXft:0= + ) + ) + !minimal? ( + afs? ( net-fs/openafs ) + avahi? ( net-dns/avahi:0= ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio:0= ) + fftw? ( sci-libs/fftw:3.0= ) + graphviz? ( media-gfx/graphviz:0= ) + http? ( dev-libs/fcgi:0= ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + math? ( + sci-libs/gsl:0= + sci-mathematics/unuran:0= + mpi? ( virtual/mpi ) + ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc:0= dev-db/unixODBC:0= ) ) + oracle? ( dev-db/oracle-instantclient-basic:0= ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( >=sci-physics/pythia-8.1.80:8= <sci-physics/pythia-8.2.0:8= ) + python? ( ${PYTHON_DEPS} ) + ruby? ( + dev-lang/ruby:= + dev-ruby/rubygems:= + ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( >=net-libs/xrootd-3.3.5:0= ) + )" + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + reflex? ( dev-cpp/gccxml ) + xinetd? ( sys-apps/xinetd )" + +PDEPEND="doc? ( !minimal? ( ~app-doc/root-docs-${PV}[http=,math=] ) )" + +S="${WORKDIR}/${PN}" + +# install stuff in ${P} and not ${PF} for easier tracking in root-docs +DOC_DIR="/usr/share/doc/${P}" + +die_compiler() { + eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" + die "Need one of the following C++$1 capable compilers:\n"\ + " >=sys-devel/gcc[cxx]-$2\n"\ + " >=sys-devel/clang-$3\n"\ + " >=dev-lang/icc-$4" +} + +# check compiler to satisfy minimal versions +# $1 - std version +# $2 - g++ +# $3 - clang++ +# $4 - icc/icpc +check_compiler() { + local ver + case "$(tc-getCXX)" in + *clang++*) + ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" + ;; + *g++*) + ver="$(gcc-version)" + ;; + *icc*|*icpc*) + ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" + ;; + *) + ewarn "You are using an unsupported compiler." + ewarn "Please report any issues upstream." + return 0 + ;; + esac + version_is_at_least "$3" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" +} + +pkg_setup() { + fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + use minimal && return + + if use math; then + if use openmp; then + if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then + ewarn "You are using a g++ without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi + + use c++11 && check_compiler "11" "4.8" "3.3" "13" + use c++14 && check_compiler "14" "4.9" "3.4" "15" +} + +src_prepare() { + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-afs.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-5.32.00-dotfont.patch \ + "${FILESDIR}"/${PN}-5.34.05-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ + "${FILESDIR}"/${PN}-5.34.13-desktop.patch \ + "${FILESDIR}"/${PN}-5.34.26-ldflags.patch + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ + xargs -0 rm || die + rm -r core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ + graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + # prefixify the configure script + sed -i \ + -e 's:/usr:${EPREFIX}/usr:g' \ + configure || die "prefixify configure failed" + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" + + # fix reflex path (bug #497280) + sed -i -e 's|${ROOTSYS}/lib|@libdir@|' config/genreflex.in || die + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR +} + +src_configure() { + local -a myconf + # Some compilers need special care + case "$(tc-getCXX)" in + *clang++*) + myconf=( + --with-clang + --with-f77="$(tc-getFC)" + ) + ;; + *icc*|*icpc*) + # For icc we need to provide architecture manually + # and not to tamper with tc-get* + use x86 && myconf=( linuxicc ) + use amd64 && myconf=( linuxx8664icc ) + ;; + *) # gcc goes here too + myconf=( + --with-cc="$(tc-getCC)" + --with-cxx="$(tc-getCXX)" + --with-f77="$(tc-getFC)" + --with-ld="$(tc-getCXX)" + ) + ;; + esac + + # the configure script is not the standard autotools + myconf+=( + --prefix="${EPREFIX}/usr" + --etcdir="${EPREFIX}/etc/root" + --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" + --docdir="${EPREFIX}${DOC_DIR}" + --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" + --testdir="${EPREFIX}${DOC_DIR}/examples/tests" + --disable-werror + --nohowto + --cflags='${CFLAGS}' + --cxxflags='${CXXFLAGS}' + ) + + if use minimal; then + myconf+=( $(usex X --gminimal --minimal) ) + else + myconf+=( + --with-afs-shared=yes + --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" + --disable-builtin-afterimage + --disable-builtin-ftgl + --disable-builtin-freetype + --disable-builtin-glew + --disable-builtin-pcre + --disable-builtin-zlib + --disable-builtin-lzma + --disable-cling + --enable-astiff + --enable-explicitlink + --enable-gdml + --enable-memstat + --enable-shadowpw + --enable-shared + --enable-soversion + --enable-table + --fail-on-missing + $(use_enable X x11) + $(use_enable X asimage) + $(use_enable X xft) + $(use_enable afs) + $(use_enable avahi bonjour) + $(use_enable c++11 cxx11) + $(use_enable c++14 cxx14) + $(use_enable fits fitsio) + $(use_enable fftw fftw3) + $(use_enable graphviz gviz) + $(use_enable http) + $(use_enable kerberos krb5) + $(use_enable ldap) + $(use_enable math gsl-shared) + $(use_enable math genvector) + $(use_enable math mathmore) + $(use_enable math minuit2) + $(use_enable math roofit) + $(use_enable math tmva) + $(use_enable math unuran) + $(use_enable mysql) + $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") + $(use_enable odbc) + $(use_enable opengl) + $(use_enable oracle) + $(use_enable postgres pgsql) + $(use_enable prefix rpath) + $(use_enable pythia6) + $(use_enable pythia8) + $(use_enable python) + $(use_enable qt4 qt) + $(use_enable qt4 qtgsi) + $(use_enable reflex cintex) + $(use_enable reflex) + $(use_enable ruby) + $(use_enable sqlite) + $(use_enable ssl) + $(use_enable xml) + $(use_enable xrootd) + ${EXTRA_ECONF} + ) + fi + + # usex can't be used here, because pg_config may be not + # installed with USE="-postgres" + use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) + + ./configure ${myconf[@]} || die "configure failed" +} + +src_compile() { + emake \ + OPT="${CXXFLAGS}" \ + F77OPT="${FFLAGS}" \ + ROOTSYS="${S}" \ + LD_LIBRARY_PATH="${S}/lib" + use emacs && ! use minimal && elisp-compile build/misc/*.el +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${S}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +cleanup_install() { + # Cleanup of files either already distributed or unused on Gentoo + pushd "${ED}" > /dev/null + rm usr/share/root/fonts/LICENSE || die + rm etc/root/proof/*.sample || die + rm -r etc/root/daemons || die + # these should be in PATH + mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die + rm ${DOC_DIR#/}/{INSTALL,LICENSE,COPYING.CINT} || die + use examples || rm -r ${DOC_DIR#/}/examples || die + cd usr/$(get_libdir)/root/cint/cint + rm lib/posix/mktypes lib/dll_stl/setup lib/G__* || die + rm lib/dll_stl/G__* lib/dll_stl/rootcint_* lib/posix/exten.o || die + rm include/makehpib || die + popd > /dev/null +} + +src_install() { + emake DESTDIR="${D}" install + + echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root + + if ! use minimal; then + use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root + if use python; then + echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + python_optimize "${D}/usr/$(get_libdir)/root" + use reflex && python_optimize "${D}/usr/$(get_libdir)/root/python/genreflex/" + fi + use ruby && \ + echo "RUBYLIB=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + use emacs && elisp-install ${PN} build/misc/*.{el,elc} + if use examples; then + # these should really be taken care of by the root make install + insinto ${DOC_DIR}/examples/tutorials/tmva + doins -r tmva/test + fi + fi + doenvd 99root + + # The build system installs Emacs support unconditionally in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -r "${ED}"/usr/share/emacs || die + + daemon_install + desktop_install + cleanup_install + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} + # needed for .license command to work + dosym "${ED}"usr/portage/licenses/LGPL-2.1 "${DOC_DIR}/LICENSE" +} + +pkg_postinst() { + fdo-mime_desktop_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-physics/root/root-5.34.32.ebuild b/sci-physics/root/root-5.34.32.ebuild new file mode 100644 index 000000000000..915e7123c314 --- /dev/null +++ b/sci-physics/root/root-5.34.32.ebuild @@ -0,0 +1,437 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +if [[ ${PV} == "9999" ]] ; then + inherit git-r3 + EGIT_REPO_URI="http://root.cern.ch/git/root.git" +else + SRC_URI="ftp://root.cern.ch/${PN}/${PN}_v${PV}.source.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +PYTHON_COMPAT=( python2_7 ) + +inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ + toolchain-funcs user versionator + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="http://root.cern.ch/" + +SLOT="0/$(get_version_component_range 1-3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +IUSE="+X afs avahi c++11 c++14 doc emacs examples fits fftw gdml + graphviz http kerberos ldap +math +memstat mpi mysql odbc + +opengl openmp oracle postgres prefix pythia6 pythia8 + python qt4 +reflex ruby shadow sqlite ssl table +tiff xinetd xml xrootd" + +# TODO: add support for: davix +# TODO: unbundle: vdt + +REQUIRED_USE=" + !X? ( !opengl !qt4 !tiff ) + mpi? ( math !openmp ) + openmp? ( math !mpi ) + python? ( ${PYTHON_REQUIRED_USE} ) +" + +CDEPEND=" + app-arch/xz-utils:0= + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/libpng:0= + sys-libs/zlib:0= + X? ( + media-libs/ftgl:0= + media-libs/glew:0= + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXpm:0= + || ( + media-libs/libafterimage:0=[gif,jpeg,png,tiff?] + >=x11-wm/afterstep-2.2.11:0=[gif,jpeg,png,tiff?] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) + qt4? ( + dev-qt/qtgui:4= + dev-qt/qtopengl:4= + dev-qt/qt3support:4= + dev-qt/qtsvg:4= + dev-qt/qtwebkit:4= + dev-qt/qtxmlpatterns:4= + ) + x11-libs/libXft:0= + ) + afs? ( net-fs/openafs ) + avahi? ( net-dns/avahi:0= ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio:0= ) + fftw? ( sci-libs/fftw:3.0= ) + graphviz? ( media-gfx/graphviz:0= ) + http? ( dev-libs/fcgi:0= ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + math? ( + sci-libs/gsl:0= + sci-mathematics/unuran:0= + mpi? ( virtual/mpi ) + ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc:0= dev-db/unixODBC:0= ) ) + oracle? ( dev-db/oracle-instantclient-basic:0= ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( >=sci-physics/pythia-8.1.80:8= <sci-physics/pythia-8.2.0:8= ) + python? ( ${PYTHON_DEPS} ) + ruby? ( + dev-lang/ruby:= + dev-ruby/rubygems:= + ) + shadow? ( virtual/shadow ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( >=net-libs/xrootd-3.3.5:0= ) +" + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + reflex? ( dev-cpp/gccxml ) + xinetd? ( sys-apps/xinetd )" + +PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )" + +S="${WORKDIR}/${PN}" + +# install stuff in ${P} and not ${PF} for easier tracking in root-docs +DOC_DIR="/usr/share/doc/${P}" + +die_compiler() { + eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" + die "Need one of the following C++$1 capable compilers:\n"\ + " >=sys-devel/gcc[cxx]-$2\n"\ + " >=sys-devel/clang-$3\n"\ + " >=dev-lang/icc-$4" +} + +# check compiler to satisfy minimal versions +# $1 - std version +# $2 - g++ +# $3 - clang++ +# $4 - icc/icpc +check_compiler() { + local ver + case "$(tc-getCXX)" in + *clang++*) + ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" + ;; + *g++*) + ver="$(gcc-version)" + ;; + *icc*|*icpc*) + ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" + ;; + *) + ewarn "You are using an unsupported compiler." + ewarn "Please report any issues upstream." + return 0 + ;; + esac + version_is_at_least "$3" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" +} + +pkg_setup() { + fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + if use math; then + if use openmp; then + if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then + ewarn "You are using a g++ without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi + + use c++11 && check_compiler "11" "4.8" "3.3" "13" + use c++14 && check_compiler "14" "4.9" "3.4" "15" +} + +src_prepare() { + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-afs.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-5.32.00-dotfont.patch \ + "${FILESDIR}"/${PN}-5.34.05-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ + "${FILESDIR}"/${PN}-5.34.26-ldflags.patch + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ + xargs -0 rm || die + rm -r core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ + graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + # prefixify the configure script + sed -i \ + -e 's:/usr:${EPREFIX}/usr:g' \ + configure || die "prefixify configure failed" + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" + + # fix reflex path (bug #497280) + sed -i -e 's|${ROOTSYS}/lib|@libdir@|' config/genreflex.in || die + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR +} + +src_configure() { + local -a myconf + # Some compilers need special care + case "$(tc-getCXX)" in + *clang++*) + myconf=( + --with-clang + --with-f77="$(tc-getFC)" + ) + ;; + *icc*|*icpc*) + # For icc we need to provide architecture manually + # and not to tamper with tc-get* + use x86 && myconf=( linuxicc ) + use amd64 && myconf=( linuxx8664icc ) + ;; + *) # gcc goes here too + myconf=( + --with-cc="$(tc-getCC)" + --with-cxx="$(tc-getCXX)" + --with-f77="$(tc-getFC)" + --with-ld="$(tc-getCXX)" + ) + ;; + esac + + # the configure script is not the standard autotools + myconf+=( + --prefix="${EPREFIX}/usr" + --etcdir="${EPREFIX}/etc/root" + --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" + --docdir="${EPREFIX}${DOC_DIR}" + --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" + --testdir="${EPREFIX}${DOC_DIR}/examples/tests" + --cflags='${CFLAGS}' + --cxxflags='${CXXFLAGS}' + --disable-builtin-afterimage + --disable-builtin-ftgl + --disable-builtin-freetype + --disable-builtin-glew + --disable-builtin-lzma + --disable-builtin-pcre + --disable-builtin-zlib + --disable-cling + --disable-werror + --enable-explicitlink + --enable-shared + --enable-soversion + --fail-on-missing + --nohowto + --with-afs-shared=yes + --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" + $(use_enable X x11) + $(use_enable X asimage) + $(use_enable X xft) + $(use_enable afs) + $(use_enable avahi bonjour) + $(use_enable c++11 cxx11) + $(use_enable c++14 cxx14) + $(use_enable fits fitsio) + $(use_enable fftw fftw3) + $(use_enable gdml) + $(use_enable graphviz gviz) + $(use_enable http) + $(use_enable kerberos krb5) + $(use_enable ldap) + $(use_enable math genvector) + $(use_enable math gsl-shared) + $(use_enable math mathmore) + $(use_enable math minuit2) + $(use_enable math roofit) + $(use_enable math tmva) + $(use_enable math vc) + $(use_enable math vdt) + $(use_enable math unuran) + $(use_enable memstat) + $(use_enable mysql) + $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") + $(use_enable odbc) + $(use_enable opengl) + $(use_enable oracle) + $(use_enable postgres pgsql) + $(use_enable prefix rpath) + $(use_enable pythia6) + $(use_enable pythia8) + $(use_enable python) + $(use_enable qt4 qt) + $(use_enable qt4 qtgsi) + $(use_enable reflex cintex) + $(use_enable reflex) + $(use_enable ruby) + $(use_enable shadow shadowpw) + $(use_enable sqlite) + $(use_enable ssl) + $(use_enable table) + $(use_enable tiff astiff) + $(use_enable xml) + $(use_enable xrootd) + ${EXTRA_ECONF} + ) + + # usex can't be used here, because pg_config may be not + # installed with USE="-postgres" + use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) + + ./configure ${myconf[@]} || die "configure failed" +} + +src_compile() { + emake \ + OPT="${CXXFLAGS}" \ + F77OPT="${FFLAGS}" \ + ROOTSYS="${S}" \ + LD_LIBRARY_PATH="${S}/lib" + use emacs && elisp-compile build/misc/*.el +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${S}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +cleanup_install() { + # Cleanup of files either already distributed or unused on Gentoo + pushd "${ED}" > /dev/null + rm usr/share/root/fonts/LICENSE || die + rm etc/root/proof/*.sample || die + rm -r etc/root/daemons || die + # these should be in PATH + mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die + rm ${DOC_DIR#/}/{INSTALL,LICENSE,COPYING.CINT} || die + use examples || rm -r ${DOC_DIR#/}/examples || die + cd usr/$(get_libdir)/root/cint/cint + rm lib/posix/mktypes lib/dll_stl/setup lib/G__* || die + rm lib/dll_stl/G__* lib/dll_stl/rootcint_* lib/posix/exten.o || die + rm include/makehpib || die + popd > /dev/null +} + +src_install() { + emake DESTDIR="${D}" install + + echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root + + use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root + if use python; then + echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + python_optimize "${D}/usr/$(get_libdir)/root" + use reflex && python_optimize "${D}/usr/$(get_libdir)/root/python/genreflex/" + fi + use ruby && \ + echo "RUBYLIB=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + use emacs && elisp-install ${PN} build/misc/*.{el,elc} + if use examples; then + # these should really be taken care of by the root make install + insinto ${DOC_DIR}/examples/tutorials/tmva + doins -r tmva/test + fi + doenvd 99root + + # The build system installs Emacs support unconditionally in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -r "${ED}"/usr/share/emacs || die + + daemon_install + desktop_install + cleanup_install + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} + # needed for .license command to work + dosym "${ED}"usr/portage/licenses/LGPL-2.1 "${DOC_DIR}/LICENSE" +} + +pkg_postinst() { + fdo-mime_desktop_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-physics/root/root-6.02.05-r2.ebuild b/sci-physics/root/root-6.02.05-r2.ebuild new file mode 100644 index 000000000000..03f0835c3ad6 --- /dev/null +++ b/sci-physics/root/root-6.02.05-r2.ebuild @@ -0,0 +1,486 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +if [[ ${PV} == "9999" ]] ; then + inherit git-r3 + EGIT_REPO_URI="http://root.cern.ch/git/root.git" +else + SRC_URI="ftp://root.cern.ch/${PN}/${PN}_v${PV}.source.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +PYTHON_COMPAT=( python2_7 ) + +inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ + toolchain-funcs user versionator + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="http://root.cern.ch/" +DOC_URI="ftp://root.cern.ch/${PN}/doc" + +SLOT="0/$(get_version_component_range 1-3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +IUSE="+X afs avahi doc emacs examples fits fftw gdml geocad + graphviz http kerberos ldap +math +memstat mpi mysql odbc + +opengl openmp oracle postgres prefix pythia6 pythia8 + python qt4 shadow sqlite ssl table +tiff xinetd xml xrootd" + +# TODO: add support for: davix +# TODO: ROOT-6 supports x32 ABI, but half of its dependencies doesn't +# TODO: unbundle: cling, vdt + +REQUIRED_USE=" + !X? ( !opengl !qt4 !tiff ) + mpi? ( math !openmp ) + openmp? ( math !mpi ) + python? ( ${PYTHON_REQUIRED_USE} ) +" + +CDEPEND=" + app-arch/xz-utils:0= + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/libpng:0= + >=sys-devel/clang-3.4:= + sys-libs/zlib:0= + X? ( + media-libs/ftgl:0= + media-libs/glew:0= + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXpm:0= + || ( + media-libs/libafterimage:0=[gif,jpeg,png,tiff?] + >=x11-wm/afterstep-2.2.11:0=[gif,jpeg,png,tiff?] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) + qt4? ( + dev-qt/qtgui:4= + dev-qt/qtopengl:4= + dev-qt/qt3support:4= + dev-qt/qtsvg:4= + dev-qt/qtwebkit:4= + dev-qt/qtxmlpatterns:4= + ) + x11-libs/libXft:0= + ) + afs? ( net-fs/openafs ) + avahi? ( net-dns/avahi:0= ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio:0= ) + fftw? ( sci-libs/fftw:3.0= ) + geocad? ( <sci-libs/opencascade-6.8.0:= ) + graphviz? ( media-gfx/graphviz:0= ) + http? ( dev-libs/fcgi:0= ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + math? ( + sci-libs/gsl:0= + sci-mathematics/unuran:0= + mpi? ( virtual/mpi ) + ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc:0= dev-db/unixODBC:0= ) ) + oracle? ( dev-db/oracle-instantclient-basic:0= ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( >=sci-physics/pythia-8.1.80:8= ) + python? ( ${PYTHON_DEPS} ) + shadow? ( virtual/shadow ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( >=net-libs/xrootd-3.3.5:0= ) +" + +# TODO: ruby is not yet ported to ROOT-6, reenable when (if?) ready +# ruby? ( +# dev-lang/ruby:= +# dev-ruby/rubygems:= +# ) + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + xinetd? ( sys-apps/xinetd )" + +PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )" + +# install stuff in ${P} and not ${PF} for easier tracking in root-docs +DOC_DIR="/usr/share/doc/${P}" + +OC_UNSUPPORTED="6.8.0" + +die_compiler() { + eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" + die "Need one of the following C++$1 capable compilers:\n"\ + " >=sys-devel/gcc[cxx]-$2\n"\ + " >=sys-devel/clang-$3\n"\ + " >=dev-lang/icc-$4" +} + +# check compiler to satisfy minimal versions +# $1 - std version +# $2 - g++ +# $3 - clang++ +# $4 - icc/icpc +check_compiler() { + local ver + case "$(tc-getCXX)" in + *clang++*) + ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" + ;; + *g++*) + ver="$(gcc-version)" + ;; + *icc*|*icpc*) + ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" + eerror "ROOT-6 is known not to build with ICC." + eerror "Please report any isuses upstream." + ;; + *) + ewarn "You are using an unsupported compiler." + ewarn "Please report any issues upstream." + return 0 + ;; + esac + version_is_at_least "$3" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" +} + +pkg_setup() { + fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + if use math; then + if use openmp; then + if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then + ewarn "You are using a g++ without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi + + # c++11 support is mandatory + check_compiler "11" "4.8" "3.4" "13" + + # Active version of opencascade may be >= $OC_UNSUPPORTED, + # so we need to eselect proper version (it must exist due to DEPEND requirement) + if use geocad; then + oc_current=$(eselect opencascade show) + # Proceed only if active version is unsupported + if version_is_at_least "${OC_UNSUPPORTED}" "${oc_current}"; then + local -a vlist + vlist=( $(version_sort $(eselect opencascade list | awk '/^ / { print $2 }')) ) + local i + # search for higehr version < $OC_UNSUPPORTED + # list is sorted acsending, so loop backwards + for (( i=$(( ${#vlist[@]} -1 )); i>=0; i-- )); do + version_is_at_least "${OC_UNSUPPORTED}" "${vlist[i]}" || break + done + [[ $i == "-1" ]] && die "No suitable opencascade eselect slot is available (<${OC_UNSUPPORTED})" + + einfo "Switching opencascade to supported slot: ${oc_current} -> ${vlist[i]}" + eselect opencascade set ${vlist[i]} > /dev/null || die "eselect opencascade set ${vlist[i]} failed!" + else + # forget it, effectively disabling eselect cleanup + unset oc_current + fi + fi +} + +src_prepare() { + # Second version of makepch is required in order to generate + # PCH file appropriate for Gentoo include headers layout. + # This can be done only at install stage, when files are placed + # as appropriate. Premature modification of makepch.sh will + # broke build process, however. + #cp "etc/dictpch/makepch.sh" "etc/dictpch/makepch-gentoo.sh" || die + + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-afs.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-5.34.13-desktop.patch \ + "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ + "${FILESDIR}"/${PN}-6.00.01-dotfont.patch \ + "${FILESDIR}"/${PN}-6.00.01-geocad.patch \ + "${FILESDIR}"/${PN}-6.00.01-llvm.patch \ + "${FILESDIR}"/${PN}-6.00.01-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-6.00.01-prop-flags.patch \ + "${FILESDIR}"/${PN}-6.02.05-xrootd4.patch + #"${FILESDIR}"/${PN}-6.02.05-dictpch.patch \ + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ + xargs -0 rm || die + rm -r core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ + graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + # prefixify the configure script + sed -i \ + -e 's:/usr:${EPREFIX}/usr:g' \ + configure || die "prefixify configure failed" + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR +} + +# NB: ROOT uses bundled LLVM, because it is patched and API-incompatible with +# system LLVM. +# NB: As of 6.00.0.1 cmake is not ready as it can't fully replace configure, +# e.g. for afs and geocad. + +src_configure() { + local -a myconf + # Some compilers need special care + case "$(tc-getCXX)" in + *clang++*) + myconf=( + --with-clang + --with-f77="$(tc-getFC)" + ) + ;; + *icc*|*icpc*) + # For icc we need to provide architecture manually + # and not to tamper with tc-get* + use x86 && myconf=( linuxicc ) + use amd64 && myconf=( linuxx8664icc ) + ;; + *) # gcc goes here too + myconf=( + --with-cc="$(tc-getCC)" + --with-cxx="$(tc-getCXX)" + --with-f77="$(tc-getFC)" + --with-ld="$(tc-getCXX)" + ) + ;; + esac + + # the configure script is not the standard autotools + myconf+=( + --prefix="${EPREFIX}/usr" + --etcdir="${EPREFIX}/etc/root" + --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" + --docdir="${EPREFIX}${DOC_DIR}" + --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" + --testdir="${EPREFIX}${DOC_DIR}/examples/tests" + --disable-builtin-afterimage + --disable-builtin-ftgl + --disable-builtin-freetype + --disable-builtin-glew + --disable-builtin-lzma + --disable-builtin-pcre + --disable-builtin-zlib + --disable-werror + --enable-explicitlink + --enable-shared + --enable-soversion + --fail-on-missing + --nohowto + --with-afs-shared=yes + --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" + $(use_enable X x11) + $(use_enable X asimage) + $(use_enable X xft) + $(use_enable afs) + $(use_enable avahi bonjour) + $(use_enable fits fitsio) + $(use_enable fftw fftw3) + $(use_enable gdml) + $(use_enable geocad) + $(use_enable graphviz gviz) + $(use_enable http) + $(use_enable kerberos krb5) + $(use_enable ldap) + $(use_enable math genvector) + $(use_enable math gsl-shared) + $(use_enable math mathmore) + $(use_enable math minuit2) + $(use_enable math roofit) + $(use_enable math tmva) + $(use_enable math vc) + $(use_enable math vdt) + $(use_enable math unuran) + $(use_enable memstat) + $(use_enable mysql) + $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") + $(use_enable odbc) + $(use_enable opengl) + $(use_enable oracle) + $(use_enable postgres pgsql) + $(use_enable prefix rpath) + $(use_enable pythia6) + $(use_enable pythia8) + $(use_enable python) + $(use_enable qt4 qt) + $(use_enable qt4 qtgsi) + $(use_enable shadow shadowpw) + $(use_enable sqlite) + $(use_enable ssl) + $(use_enable table) + $(use_enable tiff astiff) + $(use_enable xml) + $(use_enable xrootd) + ${EXTRA_ECONF} + ) + + # usex can't be used here, because pg_config may be not + # installed with USE="-postgres" + use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) + + ./configure ${myconf[@]} || die "configure failed" +} + +src_compile() { + emake \ + OPT="${CXXFLAGS}" \ + F77OPT="${FFLAGS}" \ + ROOTSYS="${S}" \ + LD_LIBRARY_PATH="${S}/lib" + use emacs && elisp-compile build/misc/*.el +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${S}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +cleanup_install() { + # Cleanup of files either already distributed or unused on Gentoo + pushd "${ED}" > /dev/null + rm usr/share/root/fonts/LICENSE || die + rm etc/root/proof/*.sample || die + rm -r etc/root/daemons || die + # these should be in PATH + mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die + rm ${DOC_DIR#/}/{INSTALL,LICENSE} || die + use examples || rm -r ${DOC_DIR#/}/examples || die + + # clean hardcoded sandbox paths + #rm etc/root/dictpch/allCppflags.txt.tmp || die + #sed -i "s|${S}/||" etc/root/cling/llvm/Config/llvm-config.h || die + # regenerate pch for Gentoo headers layout + #rm "etc/root/allDict.cxx.pch" || die + #sed -i 's|etc/dictpch|etc/root/dictpch|' etc/root/dictpch/allLinkDefs.h || die + #sed -i 's|etc/cling|etc/root/cling|' etc/root/dictpch/allHeaders.h || die + #sed -i "s|ROOTDIR_TEMPLATE|${ED}|" etc/root/dictpch/makepch-gentoo.sh || die + #etc/root/dictpch/makepch-gentoo.sh etc/root/allDict.cxx.pch || die "PCH generation failed" +} + +src_install() { + ROOTSYS="${S}" emake DESTDIR="${D}" install + insinto "${DOC_DIR}" + doins README.md + + echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root + use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root + + if use python; then + echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + python_optimize "${D}/usr/$(get_libdir)/root" + fi + use emacs && elisp-install ${PN} build/misc/*.{el,elc} + if use examples; then + # these should really be taken care of by the root make install + insinto ${DOC_DIR}/examples/tutorials/tmva + doins -r tmva/test + fi + doenvd 99root + + # The build system installs Emacs support unconditionally in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -r "${ED}"/usr/share/emacs || die + + daemon_install + desktop_install + cleanup_install + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} + # needed for .license command to work + dosym "${ED}"usr/portage/licenses/LGPL-2.1 "${DOC_DIR}/LICENSE" +} + +pkg_postinst() { + fdo-mime_desktop_database_update + + # restort opencascade eselect slot + if use geocad && [[ -n ${oc_current} ]]; then + einfo "Switching to user set slot: $(eselect opencascade show) -> ${oc_current}" + eselect opencascade set ${oc_current} > /dev/null || eerror "eselect opencascade set ${vlist[i]} failed!" + unset oc_current + fi +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-physics/sassena/Manifest b/sci-physics/sassena/Manifest new file mode 100644 index 000000000000..9da964bce23e --- /dev/null +++ b/sci-physics/sassena/Manifest @@ -0,0 +1 @@ +DIST sassena-v1.4.1.tar.gz 777979 RMD160 95ae113e7671bc8dbc273beaeaa6eae0f5e6ea9c SHA1 e32ede7c8885eb4e402a506c8aba9e10ac3dc59c SHA256 32f49bad943136bad4cce8b4c427cf1756ae43e20691144b58900653dfc5873f diff --git a/sci-physics/sassena/files/sassena-1.4.1-libs.patch b/sci-physics/sassena/files/sassena-1.4.1-libs.patch new file mode 100644 index 000000000000..cded9f7d40db --- /dev/null +++ b/sci-physics/sassena/files/sassena-1.4.1-libs.patch @@ -0,0 +1,51 @@ +diff -urN sassena-v1.4.1/cmake/CMakeLists.txt.executables sassena-v1.4.1.patched/cmake/CMakeLists.txt.executables +--- sassena-v1.4.1/cmake/CMakeLists.txt.executables 2012-02-03 04:43:33.000000000 +0400 ++++ sassena-v1.4.1.patched/cmake/CMakeLists.txt.executables 2012-03-21 18:07:13.000000000 +0400 +@@ -61,6 +61,20 @@ + INSTALL(TARGETS s_maketnx RUNTIME DESTINATION bin) + INSTALL(TARGETS s_stage RUNTIME DESTINATION bin) + ++IF(NOT STATIC) ++INSTALL(TARGETS sass_controlio LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_decomposition LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_log LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_math LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_mpi LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_report LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_sample LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_scatter_devices LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_services LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_stager LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++INSTALL(TARGETS sass_vendor_xdrfile LIBRARY DESTINATION ${LIB_INSTALL_DIR}) ++ENDIF(NOT STATIC) ++ + TARGET_LINK_LIBRARIES (unit_broadcast + sass_log + sass_report +@@ -69,4 +83,4 @@ + ${BOOST_LIBRARIES} + ) + +-INSTALL(TARGETS unit_broadcast RUNTIME DESTINATION bin) +\ В конце файла нет новой строки ++INSTALL(TARGETS unit_broadcast RUNTIME DESTINATION bin) +diff -urN sassena-v1.4.1/cmake/CMakeLists.txt.shared sassena-v1.4.1.patched/cmake/CMakeLists.txt.shared +--- sassena-v1.4.1/cmake/CMakeLists.txt.shared 2012-02-03 04:43:33.000000000 +0400 ++++ sassena-v1.4.1.patched/cmake/CMakeLists.txt.shared 2012-03-21 18:10:30.000000000 +0400 +@@ -4,6 +4,8 @@ + + SET(INTERNAL_LIBRARY_TYPE SHARED) + ++SET(LIB_INSTALL_DIR ${CMAKE_INSTALL_PREFIX}/lib) ++ + IF(CMAKE_HOST_APPLE) + SET(CMAKE_EXE_LINKER_FLAGS "-fPIC ${CMAKE_EXE_LINKER_FLAGS}") + ELSE(CMAKE_HOST_APPLE) +@@ -15,4 +17,4 @@ + INCLUDE(${CMAKE_PROJECT_PATH}/CMakeLists.txt.intern) + INCLUDE(${CMAKE_PROJECT_PATH}/CMakeLists.txt.executables) + +-INCLUDE(${CMAKE_PROJECT_PATH}/CMakeLists.txt.packages) +\ В конце файла нет новой строки ++INCLUDE(${CMAKE_PROJECT_PATH}/CMakeLists.txt.packages) +diff -urN sassena-v1.4.1/CMakeLists.txt sassena-v1.4.1.patched/CMakeLists.txt diff --git a/sci-physics/sassena/metadata.xml b/sci-physics/sassena/metadata.xml new file mode 100644 index 000000000000..277a0627f0dd --- /dev/null +++ b/sci-physics/sassena/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>alexxy@gentoo.org</email> + <name>Alexey Shvetsov</name> + </maintainer> +</pkgmetadata> + diff --git a/sci-physics/sassena/sassena-1.4.1.ebuild b/sci-physics/sassena/sassena-1.4.1.ebuild new file mode 100644 index 000000000000..f673d94cde83 --- /dev/null +++ b/sci-physics/sassena/sassena-1.4.1.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit cmake-utils + +MY_P="${PN}-v${PV}" + +DESCRIPTION="Software for Calculating Scattering Diagrams on Massively Parallel Computers" +HOMEPAGE="http://www.sassena.org" +SRC_URI="http://www.sassena.org/software/source-code/releases/v${PV}/${MY_P}.tar.gz/at_download/file -> ${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux" +IUSE="" + +DEPEND=" + dev-libs/boost[mpi] + sci-libs/hdf5[mpi] + dev-libs/libxml2 + sci-libs/fftw:3.0 + virtual/mpi + virtual/blas + virtual/lapack" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( + "${FILESDIR}/$P-libs.patch" + ) diff --git a/sci-physics/siscone/Manifest b/sci-physics/siscone/Manifest new file mode 100644 index 000000000000..31778b936969 --- /dev/null +++ b/sci-physics/siscone/Manifest @@ -0,0 +1 @@ +DIST siscone-2.0.6.tar.gz 473370 SHA256 f66f0ca5360f2cf0413f720b376bf850cde46fe72af093560536e6f0338d8a76 SHA512 3a1bbd50db8800a2ce00eac4f4cd498d7e6674ba739ed8157f6e0c0e32fd7724d19d227b5a023fa945a5b4be5c415c5c77c2e2a60e80ec4029c016e3fd95983d WHIRLPOOL ebe4f44ae784bfca39b47e9eb20d0ea50daeb9c01b2e92f1608f246f416960fd1dec6e0f8e9f9d49fba155fae2c86b4a4853c199737803c3c50d580a4b725637 diff --git a/sci-physics/siscone/metadata.xml b/sci-physics/siscone/metadata.xml new file mode 100644 index 000000000000..eeceb52716c5 --- /dev/null +++ b/sci-physics/siscone/metadata.xml @@ -0,0 +1,10 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-physics</herd> +<longdescription lang="en"> + SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes + N^2*ln(N) time to find jets among N particles, comparing to N*2^N time of + other algorithms. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/siscone/siscone-2.0.6.ebuild b/sci-physics/siscone/siscone-2.0.6.ebuild new file mode 100644 index 000000000000..329ec44b0f07 --- /dev/null +++ b/sci-physics/siscone/siscone-2.0.6.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit autotools-utils + +DESCRIPTION="Hadron Seedless Infrared-Safe Cone jet algorithm" +HOMEPAGE="http://siscone.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples static-libs" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_install() { + autotools-utils_src_install + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.{cpp,h} + insinto /usr/share/doc/${PF}/examples/events + doins examples/events/*.dat + fi +} diff --git a/sci-physics/xfoil/Manifest b/sci-physics/xfoil/Manifest new file mode 100644 index 000000000000..35646cfc07e9 --- /dev/null +++ b/sci-physics/xfoil/Manifest @@ -0,0 +1,2 @@ +DIST dataflow.pdf 7654 SHA256 4596c77a3fa24cd334b35c34fcbd0b4f1d9055273c0862643e2d07b5e774aff5 +DIST xfoil6.97.tar.gz 3972497 SHA256 293e28e269bd88a62f8b6ba6bf684f16843f6776736e6b77aaa8b6bebc467a81 SHA512 02c0a123fb99fa20de1e3577ca7c6ce00d494058f2ef3ec82e3fdea48901f4346180aea3436e001c5b90401007ccdd5b7e9daa6a96794f0d6b5781a5b36e36e7 WHIRLPOOL 3de5e6c56a906a71b2be1fcf39ea031454c9192b4a649a23aaa889566fea2e92b37239fa6ed90c4b050bdb5759943d0265881f316ecd5b48a06fe4217af36ef7 diff --git a/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch b/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch new file mode 100644 index 000000000000..67fc19c645f9 --- /dev/null +++ b/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch @@ -0,0 +1,29 @@ +--- plotlib/ps_subs.f.orig 2004-08-21 19:02:44.000000000 +0100 ++++ plotlib/ps_subs.f 2007-05-03 19:14:28.901490750 +0100 +@@ -559,7 +559,7 @@ + c in the iout array (3,1,3,1,3,1,3,1) + c Note: the bit mask is shifted to always start counting on a '1' bit. + c +-c--- Uses the library routines and() and rshift() for bit manipulation ++c--- Uses the library routines and() and ishft() for bit manipulation + c which are present in most fortran libraries as extensions to f77. + c + dimension iout(*) +@@ -570,7 +570,7 @@ + ibitold = and(1,imask) + if(ibitold.NE.0) go to 5 + nshft = n +- imask = rshift(imask,1) ++ imask = ishft(imask,-1) + end do + c + 5 nout = 0 +@@ -594,7 +594,7 @@ + c + ibitold = ibit + nbits = nbits + 1 +- imask = rshift(imask,1) ++ imask = ishft(imask,-1) + end do + c--- Add final bit(s) to end of 16 bits checked + c--- Now append any zero bits shifted out originally diff --git a/sci-physics/xfoil/files/xfoil-6.97-overflow.patch b/sci-physics/xfoil/files/xfoil-6.97-overflow.patch new file mode 100644 index 000000000000..73656f927a48 --- /dev/null +++ b/sci-physics/xfoil/files/xfoil-6.97-overflow.patch @@ -0,0 +1,22 @@ +--- src/pplot.f.orig 2008-08-21 20:21:08.000000000 +0100 ++++ src/pplot.f 2008-08-21 20:21:42.000000000 +0100 +@@ -36,7 +36,7 @@ + PROGRAM PPLOT + INCLUDE 'PPLOT.INC' + C +- LOGICAL ERROR, LGETFN ++ LOGICAL ERROR, LGETFN, LERR + REAL RINP(10) + REAL CPOLO(NAX,IPTOT,NPX), VPOLO(NAX,2,NPX) + C +--- src/xoper.f.orig 2008-08-22 15:55:27.000000000 +0100 ++++ src/xoper.f 2008-08-22 15:53:36.000000000 +0100 +@@ -114,7 +114,7 @@ + C---- don't try to read integers, since might get integer overflow + DO I=1, NINPUT + IF(ABS(RINPUT(I)) .GT. 2.1E9) THEN +- IINPUT(I) = 2**31 ++ IINPUT(I) = HUGE(0) + ELSE + IINPUT(I) = INT(RINPUT(I)) + ENDIF diff --git a/sci-physics/xfoil/metadata.xml b/sci-physics/xfoil/metadata.xml new file mode 100644 index 000000000000..c6130c99cea3 --- /dev/null +++ b/sci-physics/xfoil/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-physics</herd> + <maintainer> + <email>robbat2@gentoo.org</email> + </maintainer> + <longdescription lang="en"> + XFOIL is an interactive program for the design and analysis of subsonic isolated airfoils. + It consists of a collection of menu-driven routines which perform various useful functions such as: + * Viscous (or inviscid) analysis of an existing airfoil + * Airfoil design and redesign by interactive modification of surface speed distributions + * Airfoil redesign by interactive modification of geometric parameters + * Blending of airfoils + * Writing and reading of airfoil coordinates and polar save files + * Plotting of geometry, pressure distributions, and multiple polars +</longdescription> +</pkgmetadata> diff --git a/sci-physics/xfoil/xfoil-6.97.ebuild b/sci-physics/xfoil/xfoil-6.97.ebuild new file mode 100644 index 000000000000..d1679ff859bf --- /dev/null +++ b/sci-physics/xfoil/xfoil-6.97.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils fortran-2 + +DESCRIPTION="Design and analysis of subsonic isolated airfoils" +HOMEPAGE="http://raphael.mit.edu/xfoil/" +SRC_URI=" + http://web.mit.edu/drela/Public/web/${PN}/${PN}${PV}.tar.gz + doc? ( http://web.mit.edu/drela/Public/web/${PN}/dataflow.pdf )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" + +RDEPEND="x11-libs/libX11" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/Xfoil" + +src_prepare() { + sed \ + -e '/^FC/d' \ + -e '/^CC/d' \ + -e '/^FFLAGS/d' \ + -e '/^CFLAGS/d' \ + -e 's/^\(FFLOPT .*\)/FFLOPT = $(FFLAGS)/g' \ + -i {bin,plotlib,orrs/bin}/Makefile plotlib/config.make \ + || die "sed for flags and compilers failed" + + # fix bug #147033 + [[ $(tc-getFC) == *gfortran ]] && \ + epatch "${FILESDIR}"/${PN}-6.96-gfortran.patch + + epatch "${FILESDIR}"/${P}-overflow.patch + + sed \ + -e "s:/var/local/codes/orrs/osmap.dat:${EPREFIX}/usr/share/xfoil/orrs/osmap.dat:" \ + -i orrs/src/osmap.f || die "sed osmap.f failed" +} + +src_compile() { + cd "${S}"/orrs/bin + emake FLG="${FFLAGS}" FTNLIB="${LDFLAGS}" OS + cd "${S}"/orrs + bin/osgen osmaps_ns.lst + cd "${S}"/plotlib + emake CFLAGS="${CFLAGS} -DUNDERSCORE" + cd "${S}"/bin + for i in xfoil pplot pxplot; do + emake \ + PLTOBJ="../plotlib/libPlt.a" \ + CFLAGS="${CFLAGS} -DUNDERSCORE" \ + FTNLIB="${LDFLAGS}" \ + ${i} + done +} + +src_install() { + dobin bin/pplot bin/pxplot bin/xfoil + insinto /usr/share/xfoil/orrs + doins orrs/osm*.dat + dodoc *.txt README + insinto /usr/share/doc/${PF}/ + use examples && doins -r runs + use doc && dodoc "${DISTDIR}"/dataflow.pdf +} |