diff options
| -rw-r--r-- | sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch | 11 | ||||
| -rw-r--r-- | sci-biology/gibbs/gibbs-3.1.ebuild | 34 |
2 files changed, 27 insertions, 18 deletions
diff --git a/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch b/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch new file mode 100644 index 000000000000..6eaad637cfc8 --- /dev/null +++ b/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch @@ -0,0 +1,11 @@ +--- a/configure.in ++++ b/configure.in +@@ -51,7 +51,7 @@ + fi
+ ])
+
+-CFLAGS="$OPTFLAGS $MPIFLAGS -Wall -Werror $MACFLAG"
++CFLAGS="$CFLAGS $OPTFLAGS $MPIFLAGS -Wall $MACFLAG"
+
+ AC_PROG_CC([$COMP_LIST])
+
diff --git a/sci-biology/gibbs/gibbs-3.1.ebuild b/sci-biology/gibbs/gibbs-3.1.ebuild index de8322a5068e..a06d0880ee4d 100644 --- a/sci-biology/gibbs/gibbs-3.1.ebuild +++ b/sci-biology/gibbs/gibbs-3.1.ebuild @@ -1,11 +1,9 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=4 +EAPI=7 -AUTOTOOLS_AUTORECONF=yes - -inherit autotools-utils multilib +inherit autotools DESCRIPTION="Identify motifs, conserved regions, in DNA or protein sequences" HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html" @@ -13,37 +11,37 @@ SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz" LICENSE="GPL-2" SLOT="0" -IUSE="mpi" KEYWORDS="amd64 x86" +IUSE="mpi" DEPEND=" mpi? ( virtual/mpi - sys-cluster/mpe2 )" + sys-cluster/mpe2 + )" RDEPEND="${DEPEND}" +PATCHES=( "${FILESDIR}"/${PN}-3.1-fix-CFLAGS.patch ) + src_prepare() { - sed \ - -e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \ - -e 's/-Werror//' \ - -i configure.in || die - autotools-utils_src_prepare + default + mv configure.{in,ac} || die + eautoreconf } src_configure() { - if use mpi; then export CC=mpicc; fi - local myeconfargs=( $(use_enable mpi) ) - autotools-utils_src_configure + use mpi && export CC=mpicc + econf $(use_enable mpi) } src_install() { - autotools-utils_src_install + default + exeinto /usr/$(get_libdir)/${PN} doexe *.pl - dodoc README ChangeLog } pkg_postinst() { - einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/$(get_libdir)/${PN}." + einfo "Supplementary Perl scripts for Gibbs have been installed into ${EROOT}/usr/$(get_libdir)/${PN}." einfo "These scripts require installation of sci-biology/bioperl." } |