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Diffstat (limited to 'sci-biology/abyss/abyss-2.0.2.ebuild')
-rw-r--r-- | sci-biology/abyss/abyss-2.0.2.ebuild | 47 |
1 files changed, 0 insertions, 47 deletions
diff --git a/sci-biology/abyss/abyss-2.0.2.ebuild b/sci-biology/abyss/abyss-2.0.2.ebuild deleted file mode 100644 index 92a3780e0ade..000000000000 --- a/sci-biology/abyss/abyss-2.0.2.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 - -inherit autotools toolchain-funcs - -DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" -HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" -SRC_URI="https://github.com/bcgsc/abyss/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="abyss" -SLOT="0" -IUSE="+mpi openmp misc-haskell" -KEYWORDS="~amd64 ~x86" - -RDEPEND=" - dev-cpp/sparsehash - dev-libs/boost:= - misc-haskell? ( dev-libs/gmp:0= - virtual/libffi:0= - ) - mpi? ( virtual/mpi ) -" -DEPEND="${RDEPEND} - misc-haskell? ( dev-lang/ghc - dev-haskell/mmap ) -" - -# todo: --enable-maxk=N configure option -# todo: fix automagic mpi toggling - -src_prepare() { - default - sed -i -e "s/-Werror//" configure.ac || die #365195 - sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die - eautoreconf -} - -src_configure() { - # disable building haskell tool Misc/samtobreak - # unless request by user: bug #534412 - use misc-haskell || export ac_cv_prog_ac_ct_GHC= - - econf $(use_enable openmp) -} |