diff options
Diffstat (limited to 'sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch')
| -rw-r--r-- | sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch | 13 |
1 files changed, 0 insertions, 13 deletions
diff --git a/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch b/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch deleted file mode 100644 index 7cc0e23de2d4..000000000000 --- a/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/test/intersect/new_test-intersect.sh -+++ b/test/intersect/new_test-intersect.sh -@@ -975,8 +975,8 @@ - # Test intersect preserve the text header in bam - ############################################################ - echo -e " intersect.new.t78...\c" --echo -e "@HD VN:1.5 SO:coordinate" > exp --echo "@HD VN:1.5 SO:coordinate" | samtools view -b | $BT intersect -a /dev/stdin -b b.bed | samtools view -H >obs -+echo -e "@HD VN:1.5 SO:coordinate" > exp -+echo "@HD VN:1.5 SO:coordinate" | samtools view --no-PG -b | $BT intersect -a /dev/stdin -b b.bed | samtools view --no-PG -H >obs - check exp obs - rm exp obs - [[ $FAILURES -eq 0 ]] || exit 1; |