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Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch')
-rw-r--r--sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch14
1 files changed, 14 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch
new file mode 100644
index 000000000000..2a081ff297b8
--- /dev/null
+++ b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch
@@ -0,0 +1,14 @@
+--- bowtie-1.1.2/Makefile
++++ bowtie-1.1.2/Makefile
+@@ -106,10 +106,7 @@
+ endif
+
+ OTHER_CPPS = ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp \
+- edit.cpp ebwt.cpp
+-ifneq (1,$(WITH_TBB))
+- OTHER_CPPS += tinythread.cpp
+-endif
++ edit.cpp ebwt.cpp tinythread.cpp
+
+ SEARCH_CPPS = qual.cpp pat.cpp ebwt_search_util.cpp ref_aligner.cpp \
+ log.cpp hit_set.cpp refmap.cpp annot.cpp sam.cpp \