diff options
Diffstat (limited to 'sci-biology/mafft/mafft-7.215.ebuild')
-rw-r--r-- | sci-biology/mafft/mafft-7.215.ebuild | 64 |
1 files changed, 0 insertions, 64 deletions
diff --git a/sci-biology/mafft/mafft-7.215.ebuild b/sci-biology/mafft/mafft-7.215.ebuild deleted file mode 100644 index 05c3d8d52399..000000000000 --- a/sci-biology/mafft/mafft-7.215.ebuild +++ /dev/null @@ -1,64 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils flag-o-matic multilib toolchain-funcs - -EXTENSIONS="-without-extensions" - -DESCRIPTION="Multiple sequence alignments using a variety of algorithms" -HOMEPAGE="https://mafft.cbrc.jp/alignment/software/index.html" -SRC_URI="https://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="threads" - -S="${WORKDIR}"/${P}${EXTENSIONS} - -src_prepare() { -# epatch "${FILESDIR}"/${PN}-7.037-respect.patch - use threads && append-cppflags -Denablemultithread -# sed "s:GENTOOLIBDIR:$(get_libdir):g" -i core/Makefile || die - sed -i -e "s/(PREFIX)\/man/(PREFIX)\/share\/man/" "${S}"/core/Makefile || die "sed failed" - sed \ - -e 's:$(LDFLAGS)::g' \ - -e 's:$(CC) -o $@:$(CC) $(LDFLAGS) -o $@:g' \ - -e 's:$(CC) -shared -o $@:$(CC) $(LDFLAGS) -shared -o $@:g' \ - -e '/INSTALL/s: -s : :g' \ - -i core/Makefile || die -} - -src_compile() { - cd core || die - emake \ - $(usex threads ENABLE_MULTITHREAD="-Denablemultithread" ENABLE_MULTITHREAD="") \ - PREFIX="${EPREFIX}"/usr \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS} -Wno-unused-result" -} - -src_test() { - export MAFFT_BINARIES="${S}"/core - cd test || die - bash ../core/mafft sample > test.fftns2 || die - bash ../core/mafft --maxiterate 100 sample > test.fftnsi || die - bash ../core/mafft --globalpair sample > test.gins1 || die - bash ../core/mafft --globalpair --maxiterate 100 sample > test.ginsi || die - bash ../core/mafft --localpair sample > test.lins1 || die - bash ../core/mafft --localpair --maxiterate 100 sample > test.linsi || die - - diff test.fftns2 sample.fftns2 || die - diff test.fftnsi sample.fftnsi || die - diff test.gins1 sample.gins1 || die - diff test.ginsi sample.ginsi || die - diff test.lins1 sample.lins1 || die -} - -src_install() { - dodoc readme - cd core || die - emake PREFIX="${ED}usr" install -} |