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Diffstat (limited to 'sci-biology/mummer/mummer-3.21.ebuild')
-rw-r--r--sci-biology/mummer/mummer-3.21.ebuild52
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild
deleted file mode 100644
index e9faee09eead..000000000000
--- a/sci-biology/mummer/mummer-3.21.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-inherit eutils
-
-DESCRIPTION="A rapid whole genome aligner"
-HOMEPAGE="http://mummer.sourceforge.net/"
-SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE="doc"
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND="app-shells/tcsh"
-
-S="${WORKDIR}/MUMmer${PV}"
-
-src_unpack() {
- unpack ${A}
- # Warning: package uses CPPFLAGS on c as well as cpp, despite the name
- sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
- -e 's/LDFLAGS =$//' "${S}/Makefile" || die
-}
-
-src_compile() {
- emake || die
-
- sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \
- -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \
- -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \
- -e 's|\(set bindir = \).*|\1/usr/bin|' \
- -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \
- -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \
- scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die
- mv annotate mummer-annotate || die
- sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die
-}
-
-src_install() {
- dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die
-
- insinto /usr/share/${PN}/scripts
- doins scripts/{*.awk,*.csh,*.pl} || die
- insinto /usr/share/${PN}/lib
- doins scripts/Foundation.pm || die
-
- dodoc ACKNOWLEDGEMENTS ChangeLog README
- insinto /usr/share/doc/${PF}
- use doc && doins -r docs
-}