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Diffstat (limited to 'sci-biology/mummer/mummer-3.21.ebuild')
-rw-r--r-- | sci-biology/mummer/mummer-3.21.ebuild | 52 |
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild deleted file mode 100644 index e9faee09eead..000000000000 --- a/sci-biology/mummer/mummer-3.21.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -inherit eutils - -DESCRIPTION="A rapid whole genome aligner" -HOMEPAGE="http://mummer.sourceforge.net/" -SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="doc" -KEYWORDS="amd64 x86" - -DEPEND="" -RDEPEND="app-shells/tcsh" - -S="${WORKDIR}/MUMmer${PV}" - -src_unpack() { - unpack ${A} - # Warning: package uses CPPFLAGS on c as well as cpp, despite the name - sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ - -e 's/LDFLAGS =$//' "${S}/Makefile" || die -} - -src_compile() { - emake || die - - sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ - -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ - -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ - -e 's|\(set bindir = \).*|\1/usr/bin|' \ - -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ - -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ - scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die - mv annotate mummer-annotate || die - sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die -} - -src_install() { - dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die - - insinto /usr/share/${PN}/scripts - doins scripts/{*.awk,*.csh,*.pl} || die - insinto /usr/share/${PN}/lib - doins scripts/Foundation.pm || die - - dodoc ACKNOWLEDGEMENTS ChangeLog README - insinto /usr/share/doc/${PF} - use doc && doins -r docs -} |