diff options
Diffstat (limited to 'sci-biology/t-coffee/files')
| -rw-r--r-- | sci-biology/t-coffee/files/t-coffee-11.00-cxx11.patch | 21 | ||||
| -rw-r--r-- | sci-biology/t-coffee/files/t-coffee-11.00-gcc7.patch | 22 |
2 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/t-coffee/files/t-coffee-11.00-cxx11.patch b/sci-biology/t-coffee/files/t-coffee-11.00-cxx11.patch new file mode 100644 index 000000000000..17817d30eca2 --- /dev/null +++ b/sci-biology/t-coffee/files/t-coffee-11.00-cxx11.patch @@ -0,0 +1,21 @@ +--- a/t_coffee_source/programmes_define.h ++++ b/t_coffee_source/programmes_define.h +@@ -390,12 +390,12 @@ + #define XMLSIMPLE_language2 "Perl" + #define XMLSIMPLE_source "empty" + #define XMLSIMPLE_mode "psicoffee,expresso,accurate" +-#define x3dna-ssr_4_TCOFFEE "x3dna" +-#define x3dna-ssr_type "RNA_secondarystructure_predictor" +-#define x3dna-ssr_ADDRESS "http://x3dna.bio.columbia.edu/" +-#define x3dna-ssr_source "http://www.tcoffee.org/Packages/mirrors/source/x3dna-v2.3-linux-64bit.tar.gz" +-#define x3dna-ssr_mode "saracoffee" +-#define x3dna-ssr_update_action "never" ++#define x3dna_ssr_4_TCOFFEE "x3dna" ++#define x3dna_ssr_type "RNA_secondarystructure_predictor" ++#define x3dna_ssr_ADDRESS "http://x3dna.bio.columbia.edu/" ++#define x3dna_ssr_source "http://www.tcoffee.org/Packages/mirrors/source/x3dna-v2.3-linux-64bit.tar.gz" ++#define x3dna_ssr_mode "saracoffee" ++#define x3dna_ssr_update_action "never" + //TclinkdbEnd + /*New Methods*/ + /********************************************/ diff --git a/sci-biology/t-coffee/files/t-coffee-11.00-gcc7.patch b/sci-biology/t-coffee/files/t-coffee-11.00-gcc7.patch new file mode 100644 index 000000000000..64afc04a4b50 --- /dev/null +++ b/sci-biology/t-coffee/files/t-coffee-11.00-gcc7.patch @@ -0,0 +1,22 @@ +--- a/t_coffee_source/util_lib/aln_convertion_util.c ++++ b/t_coffee_source/util_lib/aln_convertion_util.c +@@ -5592,7 +5592,7 @@ + + list=string2list (H->seq_comment[n]); + if ( list==NULL || atoi(list[0])==1)continue; +- S->seq_comment[a]='\0'; ++ S->seq_comment[a]=NULL; + sprintf (S->name[a], "%s%s%s",H->name[n], list[1], list[2]); + vfree ( S->seq_comment[a]);S->seq_comment[a]=(char*)vcalloc ( strlen (H->seq_comment[n])+1, sizeof (char)); + for (b=3; b< atoi(list[0]); b++)S->seq_comment[a]=strcat (S->seq_comment[a], list[b]); +--- a/t_coffee_source/util_lib/util.c ++++ b/t_coffee_source/util_lib/util.c +@@ -5946,7 +5946,7 @@ + val_array[a]=(char*)vrealloc (val_array[a], strlen (v)+1); + sprintf (val_array[a],"%s",v); + } +- else val_array[a]='\0'; ++ else val_array[a]=NULL; + return v; + } + } |