diff options
Diffstat (limited to 'sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch')
| -rw-r--r-- | sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch | 292 |
1 files changed, 292 insertions, 0 deletions
diff --git a/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch b/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch new file mode 100644 index 000000000000..1a1164e342be --- /dev/null +++ b/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch @@ -0,0 +1,292 @@ +From 55356ab9c03cd25efeb5176761f2f5b3744b4371 Mon Sep 17 00:00:00 2001 +From: Kurt Kanzenbach <kurt@kmk-computers.de> +Date: Fri, 24 Jan 2020 17:59:48 +0100 +Subject: [PATCH] cmake: Disable mpiruns + +The mpiruns will violate the sandboxing. Therefore, disable them including +scotch. + +Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> +--- + CMakeLists.txt | 14 +- + CMakeModules/FindSCOTCH.cmake | 238 +++++++++++++++++----------------- + 2 files changed, 121 insertions(+), 131 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index ed5cc607c3ed..fec488002958 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -238,19 +238,9 @@ if (MACHINE_ARCH MATCHES "x86_64") + set(AMD64_LINUX true) + endif() + +-# test if mpirun/mpiexec supports the --oversubscribe flag: ++# use the --oversubscribe flag: + if(MPI_FOUND) +- execute_process( +- COMMAND ${MPIEXEC} --oversubscribe ${MPIEXEC_NUMPROC_FLAG} 4 echo ok +- RESULT_VARIABLE MPIEXEC_OVERSUBSCRIBE_RETURN_CODE +- OUTPUT_QUIET +- ERROR_QUIET) +- +- if (MPIEXEC_OVERSUBSCRIBE_RETURN_CODE EQUAL 0) +- set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") +- else() +- set(MPIEXEC_OVERSUBSCRIBE_FLAG "") +- endif() ++ set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") + endif() + + #============= 3. CONFIGURABLE BUILD OPTIONS ========================= +diff --git a/CMakeModules/FindSCOTCH.cmake b/CMakeModules/FindSCOTCH.cmake +index 5c717977dbba..146c2bf8bb60 100644 +--- a/CMakeModules/FindSCOTCH.cmake ++++ b/CMakeModules/FindSCOTCH.cmake +@@ -233,125 +233,125 @@ int main() { + ") + + message(STATUS "Performing test SCOTCH_TEST_RUNS") +- try_run( +- SCOTCH_TEST_LIB_EXITCODE +- SCOTCH_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT +- ) +- +- if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- # Output some variables +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- +- # If program does not run, try adding zlib library and test again +- if(NOT SCOTCH_TEST_RUNS) +- if (NOT ZLIB_FOUND) +- find_package(ZLIB) +- endif() +- +- if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) +- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) +- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) +- +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") +- try_run( +- SCOTCH_ZLIB_TEST_LIB_EXITCODE +- SCOTCH_ZLIB_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT +- ) +- +- # Add zlib flags if required and set test run to 'true' +- if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") +- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) +- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- +- endif() +- endif() +- +- if(NOT SCOTCH_TEST_RUNS) +- if (NOT BZIP2_FOUND) +- find_package(BZip2) +- endif() +- +- if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) +- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) +- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) +- +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") +- try_run( +- SCOTCH_BZIP2_TEST_LIB_EXITCODE +- SCOTCH_BZIP2_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT +- ) +- +- # Add zlib flags if required and set test run to 'true' +- if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") +- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) +- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- endif() +- endif() ++ # try_run( ++ # SCOTCH_TEST_LIB_EXITCODE ++ # SCOTCH_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT ++ # ) ++ ++ # if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # # Output some variables ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ ++ # # If program does not run, try adding zlib library and test again ++ # if(NOT SCOTCH_TEST_RUNS) ++ # if (NOT ZLIB_FOUND) ++ # find_package(ZLIB) ++ # endif() ++ ++ # if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) ++ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) ++ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) ++ ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") ++ # try_run( ++ # SCOTCH_ZLIB_TEST_LIB_EXITCODE ++ # SCOTCH_ZLIB_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT ++ # ) ++ ++ # # Add zlib flags if required and set test run to 'true' ++ # if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") ++ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) ++ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ ++ # endif() ++ # endif() ++ ++ # if(NOT SCOTCH_TEST_RUNS) ++ # if (NOT BZIP2_FOUND) ++ # find_package(BZip2) ++ # endif() ++ ++ # if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) ++ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) ++ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) ++ ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") ++ # try_run( ++ # SCOTCH_BZIP2_TEST_LIB_EXITCODE ++ # SCOTCH_BZIP2_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT ++ # ) ++ ++ # # Add zlib flags if required and set test run to 'true' ++ # if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") ++ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) ++ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ # endif() ++ # endif() + + endif() + endif() +-- +2.24.1 + |