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* media-sound/{mumble,murmur}: Add subslot operator to protobuf depMart Raudsepp2016-09-252-2/+2
| | | | | | | We need to rebuild mumble/murmur upon protobuf subslot change, as seen by preserved-rebuild kicking in upon protobuf3 upgrade. Acked-by: Lars Wendler <polynomial-c@gentoo.org>
* sys-kernel/gentoo-sources: Linux patch 4.7.5Mike Pagano2016-09-252-0/+32
| | | | Package-Manager: portage-2.2.28
* sci-biology/tophat: USE="threads" dep on dev-libs/boostDavid Seifert2016-09-252-8/+61
| | | | | | | | Gentoo-bug: 594810 * Remove autoconf macros from archive, depend on sys-devel/autoconf instead for the latest versions. Package-Manager: portage-2.3.1
* sci-mathematics/normaliz: bump to 3.1.2 and EAPI=6Thomas Kahle2016-09-252-0/+66
| | | | Package-Manager: portage-2.3.0
* sci-biology/vcftools: Add missing RDEPEND on sys-libs/zlibDavid Seifert2016-09-251-1/+2
| | | | Package-Manager: portage-2.3.1
* sci-biology/vcftools: Remove old ebuildDavid Seifert2016-09-253-99/+0
| | | | | | | Package-Manager: portage-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/2407 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/vcftools: Version bump to 0.1.14David Seifert2016-09-253-0/+90
| | | | | | | | | | | Gentoo-bug: 594924 * EAPI=6 * Properly RDEPEND on dev-lang/perl Package-Manager: portage-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/2407 Signed-off-by: David Seifert <soap@gentoo.org>
* app-arch/snappy: x86 stable wrt bug #595026Agostino Sarubbo2016-09-251-1/+1
| | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* games-rpg/arx-fatalis-data: x86 stable wrt bug #587358Agostino Sarubbo2016-09-251-1/+1
| | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* app-arch/snappy: amd64 stable wrt bug #595026Agostino Sarubbo2016-09-251-2/+1
| | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* games-rpg/arx-fatalis-data: amd64 stable wrt bug #587358Agostino Sarubbo2016-09-251-1/+1
| | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* profiles/package.mask: mask Exim 4.88 RC1 for testingFabian Groffen2016-09-251-0/+4
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* mail-mta/exim: version bump to 4.88_rc1 (masked)Fabian Groffen2016-09-253-0/+672
| | | | Package-Manager: portage-2.2.28
* dev-ruby/vcard: add 0.2.13Hans de Graaff2016-09-252-0/+27
| | | | Package-Manager: portage-2.2.28
* dev-lang/julia: Respect $(get_libdir) and install libjulia.so at right placeMatthias Maier2016-09-252-0/+2
| | | | Package-Manager: portage-2.2.28
* dev-python/zc-buildout: version bump to 2.5.3Alice Ferrazzi2016-09-252-0/+35
| | | | | | updated copyright Package-Manager: portage-2.2.28
* dev-python/fabric: version bump to 1.12.0Alice Ferrazzi2016-09-252-0/+77
| | | | Package-Manager: portage-2.2.28
* Add first 8.2.0 release candidate.Jorge Manuel B. S. Vicetto (jmbsvicetto)2016-09-252-0/+88
| | | | Signed-off-by: Jorge Manuel B. S. Vicetto (jmbsvicetto) <jmbsvicetto@gentoo.org>
* Security bump - addresses SA-CORE-2016-004 (bug 594718). Remove vulnerable ↵Jorge Manuel B. S. Vicetto (jmbsvicetto)2016-09-252-1/+1
| | | | | | version. Signed-off-by: Jorge Manuel B. S. Vicetto (jmbsvicetto) <jmbsvicetto@gentoo.org>
* sys-kernel/gentoo-sources: Linux patch 4.4.22Mike Pagano2016-09-242-0/+32
| | | | Package-Manager: portage-2.2.28
* media-sound/darkice: Fixed RQUIReD_USE for input codecs (bug #593790).Lars Wendler2016-09-251-2/+4
| | | | | Package-Manager: portage-2.3.1 Signed-off-by: Lars Wendler <polynomial-c@gentoo.org>
* sci-biology/bedtools: Add missing RDEPEND on sys-libs/zlibDavid Seifert2016-09-251-0/+1
| | | | Package-Manager: portage-2.3.1
* sci-biology/bedtools: Remove old ebuildsDavid Seifert2016-09-253-68/+0
| | | | Package-Manager: portage-2.3.1
* sci-biology/bedtools: Version bump to 2.26.0David Seifert2016-09-253-0/+912
| | | | | | | | | | | Gentoo-bug: 594994 * EAPI=6 * Make buildsystem output verbose * Inherit 'python-any-r1', due to python script * Add dependencies for test suite * Properly set CXX and CXXFLAGS Package-Manager: portage-2.3.1
* dev-python/six: run pkg_preinst in a temporary directoryMike Gilbert2016-09-241-1/+5
| | | | Package-Manager: portage-2.3.1_p4_p56819
* media-sound/mpg123: Removed old.Lars Wendler2016-09-253-218/+0
| | | | | Package-Manager: portage-2.3.1 Signed-off-by: Lars Wendler <polynomial-c@gentoo.org>
* media-sound/mpg123: Bump to version 1.23.7Lars Wendler2016-09-252-0/+109
| | | | | Package-Manager: portage-2.3.1 Signed-off-by: Lars Wendler <polynomial-c@gentoo.org>
* dev-libs/libtasn1: eap6 cleanups + eautoreconfAlon Bar-Lev2016-09-251-9/+13
| | | | | | Bug: 595062 Package-Manager: portage-2.2.28
* dev-lang/julia: add a live ebuildMatthias Maier2016-09-242-0/+251
| | | | Package-Manager: portage-2.2.28
* dev-lang/julia: drop old versions 0.4.3, 0.4.6Matthias Maier2016-09-245-571/+0
| | | | Package-Manager: portage-2.2.28
* dev-lang/julia: update blas dependencyMatthias Maier2016-09-241-2/+2
| | | | Package-Manager: portage-2.2.28
* virtual/blas: add version 3.6 that requires blas-reference of at least 20151113Matthias Maier2016-09-241-0/+21
| | | | Package-Manager: portage-2.2.28
* sci-libs/blas-reference: version bump to 20151113 (upstream version 3.6.0)Matthias Maier2016-09-243-0/+186
| | | | Package-Manager: portage-2.2.28
* sys-libs/musl: add sanity check for ldconfig archFelix Janda2016-09-242-0/+2
| | | | Signed-off-by: Anthony G. Basile <blueness@gentoo.org>
* dev-perl/Lab-Measurement: Update dependencies in live ebuildAndreas K. Hüttel2016-09-241-2/+6
| | | | Package-Manager: portage-2.3.0
* dev-perl/MooseX-Params-Validate: New package, needed for ↵Andreas K. Hüttel2016-09-243-0/+41
| | | | | | dev-perl/Lab-Measurement Package-Manager: portage-2.3.0
* dev-perl/Test-Files: New package, needed for dev-perl/Lab-MeasurementAndreas K. Hüttel2016-09-243-0/+33
| | | | Package-Manager: portage-2.3.0
* app-laptop/laptop-mode-tools: version bumpAlon Bar-Lev2016-09-242-0/+96
| | | | Package-Manager: portage-2.2.28
* dev-perl/Lab-Measurement: Version bumpAndreas K. Hüttel2016-09-243-1/+70
| | | | Package-Manager: portage-2.3.0
* dev-db/mysql: arm stable, bug #593614Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* net-misc/curl: arm stable, bug #593716Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* net-analyzer/wireshark: arm stable, bug #593258Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* dev-libs/libksba: arm stable, bug #592078Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* net-misc/openvpn: arm stable, bug #592070Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* sys-libs/cracklib: arm stable, bug #591456Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* media-libs/gd: arm stable, bug #587662Markus Meier2016-09-241-1/+1
| | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="arm"
* app-emulation/free42: Bump to version 1.5.10Chema Alonso Josa2016-09-244-0/+98
| | | | Package-Manager: portage-2.2.28
* sci-biology/amos: Allow for compiling with GCC 6David Seifert2016-09-244-37/+185
| | | | | | | | Gentoo-bug: 594928 * EAPI=6 * [QA] fix implicit declarations Package-Manager: portage-2.3.1
* sci-libs/libmems: Allow for compiling with GCC 6David Seifert2016-09-242-7/+38
| | | | | | | | | Gentoo-bug: 594814 * Patch taken from Debian * Add sub-slot operator for dev-libs/boost * Delete .la files Package-Manager: portage-2.3.1
* sci-biology/eugene: Bump to 4.1d from science-overlayDavid Seifert2016-09-244-0/+144
| | | | | | | | Gentoo-bug: 594700 * EAPI=6 * Fix -Wformat warnings Package-Manager: portage-2.3.1