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* sci-libs/numkit: fix RDEPEND typoSam James2021-04-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib: amd64 stableAndreas K. Hüttel2021-04-111-1/+1
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/linux-gpib-modules: amd64 stableAndreas K. Hüttel2021-04-111-1/+1
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/cantera: 2.5.1 fix USE="cti -python" test and installationSergey Torokhov2021-04-102-1/+49
| | | | | | | | | | | | | | USE="cti -python" provides python_minimal Cantera installation but thisinterface had no appropriate patch to install in proper site_packages directory in Gentoo. Thus installation in this case was broken. Also 'dev-python/ruamel-yaml' is required as RDEPEND in this case and as DEPEND for test phase. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/20317 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gmsh: add a useflag constraintMatthias Maier2021-04-091-2/+2
| | | | | | Closes: https://bugs.gentoo.org/771681 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/cantera: 2.5.1, add USE=lapackSergey Torokhov2021-04-091-2/+4
| | | | | | | | | | Add USE=lapack to use Lapack insatead of Eigen for linear algebra support in some cases. Eigen is still required if Lapack support is enabled. The sci-libs/sundials[lapack] is required to build with Lapack support. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/20071 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/cantera: 2.5.1 rev bump, pass AR env variableSergey Torokhov2021-04-092-0/+197
| | | | | | | | | Pass AR env variable to be able to use llvm-ar instead of ar. Closes: https://bugs.gentoo.org/773541 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/mumps: prefix helper get_version_component_count with _Sam James2021-04-071-2/+2
| | | | | | | | Avoids false positives with pkgcheck's MissingInherits. This is a helper function to emulate versionator.eclass, it's not a missing inherit. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/mumps: add multilib inherit for get_libnameSam James2021-04-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/orocos_kdl: keep package.xml in the standard path tooAlexis Ballier2021-04-061-1/+0
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/mpir: drop s390 to ~s390 (unstable)Sam James2021-04-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcerf: drop s390 to ~s390 (unstable)Sam James2021-04-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/votca-tools: Drop 1.6 and 1.6.2Andreas Sturmlechner2021-04-053-88/+0
| | | | | | Bug: https://bugs.gentoo.org/773175 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Stabilize 1.8.9 amd64, #780093Sam James2021-04-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/orocos_kdl: port 1.4.0 changes to liveBernd Waibel2021-04-041-37/+45
| | | | | | | | | | | | Backport changes from 1.4.0-r1 and update ebuild: - bump to EAPI 7 - port to cmake.eclass using ninja Bugday 2021-04-03 Closes: https://bugs.gentoo.org/770595 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/orocos_kdl: drop 1.4.0Bernd Waibel2021-04-041-71/+0
| | | | | | | | Bugday 2021-04-03 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/orocos_kdl: bump to EAPI 7Bernd Waibel2021-04-043-0/+130
| | | | | | | | | | | Port to cmake.eclass using ninja Bugday 2021-04-03 Bug: https://bugs.gentoo.org/770595 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/20248 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/mathgl: need-wxwidgets -> setup-wxwidgetsDavid Seifert2021-04-041-2/+3
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/symmetrica: fix StaticSrcUri (partly)Sam James2021-04-031-2/+2
| | | | | | | | | We won't be able to make this fully generic as it's currently based on a certain commit or hash, but it's _less_ to change now anyway, and it silences CI. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/oce: fix variable referencesSam James2021-04-031-1/+1
| | | | | Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dlib: Version bump to 19.22David Seifert2021-03-312-0/+98
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* Revert "sci-libs/fftw: drop 2.1.5-r9 (drop :2.1 slot)"Sam James2021-03-302-0/+138
| | | | | | | | Not yet. This reverts commit 46056a122449288e449e0f0f8030e20f5bc2e2df. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/fftw: drop 2.1.5-r9 (drop :2.1 slot)Sam James2021-03-302-138/+0
| | | | | Closes: https://bugs.gentoo.org/772815 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/btf: Disable static librariesDavid Seifert2021-03-301-4/+9
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/h5part: Keyword 1.6.6 arm, #776766Sam James2021-03-281-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/votca-tools: x86 stable wrt bug #773175Agostino Sarubbo2021-03-281-1/+1
| | | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf-cxx: port to EAPI 7, drop eutils.eclass, drop ltprune.eclassSam James2021-03-281-7/+4
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: fix DeprecatedInsintoSam James2021-03-281-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: drop static-libsSam James2021-03-281-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: port 4.2-r300 to EAPI 7, drop autotools-utils.eclassSam James2021-03-281-5/+10
| | | | | | | | | | | * Port to EAPI 7 * Drop autotools-utils.eclass * Drop unused versionator.eclass Revbumping to ensure visibility of any reported issues, but should not be technically necessary. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/plplot: Drop 5.15.0-r100Andreas Sturmlechner2021-03-281-298/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/plplot: Drop superfluous dev-ml/cairo-ocaml[gtk] DEPENDAndreas Sturmlechner2021-03-281-0/+297
| | | | | | | | | | ebuild run with USE="ocaml cairo" says: -- WARNING: PLplot OCaml Cairo support currently requires substantial development effort so is indefinitely disabled Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/votca-tools: Stabilize 1.6.4 amd64, #773175Sam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: adjust CC check for consistencySam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: add 2.20.0Sam James2021-03-272-0/+112
| | | | | Closes: https://bugs.gentoo.org/681580 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: drop useless cmake.eclass inherit in 2.18.2Sam James2021-03-271-10/+11
| | | | | Closes: https://bugs.gentoo.org/681580 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: fix github remote-idSam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gerris: port to EAPI 7, respect NMSam James2021-03-272-7/+23
| | | | | | | | | * Port to EAPI 7 * ${EPREFIX} -> ${ESYSROOT} for header location * Respect NM Closes: https://bugs.gentoo.org/725450 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gerris: fix build with slibtoolSam James2021-03-272-1/+121
| | | | | | Thanks-to: orbea <orbea@riseup.net> Closes: https://bugs.gentoo.org/778341 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/udunits: Fix broken symlinkJakov Smolic2021-03-261-1/+2
| | | | | | Closes: https://bugs.gentoo.org/770490 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cmpfit: Bump to 1.4Jakov Smolic2021-03-262-0/+33
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/alglib: Bump to 3.17.0Jakov Smolic2021-03-262-0/+31
| | | | | | | Closes: https://bugs.gentoo.org/774438 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libqalculate: Bump to 3.17.0Jakov Smolic2021-03-262-0/+66
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/vtk: 8.2.0: update deprecated var for setting Python site-dirAlexei Colin2021-03-252-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Problem: On some platforms (ppc64le), Python modules are installed into $EPREFIX/usr/lib64/pythonX.Y/site-packages instead of $EPREFIX/usr/lib/pythonX.Y/site-packages Reason: The ebuild sets VTK_INSTALL_PYTHON_MODULE_DIR, but it has been deprecated and thus has no effect. Thus, the install directory used is the default install directory, and for some reason it's /usr/lib64 instead of /usr/lib. The only reference to the deprecated var in v8.2.0 is to print the deprecation warning: ./CMake/vtkDirectories.cmake:29:if(DEFINED VTK_INSTALL_PYTHON_MODULE_DIR) ./CMake/vtkDirectories.cmake-30- message(WARNING ./CMake/vtkDirectories.cmake:31: "VTK_INSTALL_PYTHON_MODULE_DIR is no longer supported. " ./CMake/vtkDirectories.cmake-32- "Set `VTK_PYTHON_SITE_PACKAGES_SUFFIX` instead, although not needed in most cases.") ./CMake/vtkDirectories.cmake-33-endif() Note that in versions >8.2.0, this warning has been removed, too. The fix: VTK_INSTALL_PYTHON_MODULES_DIR is still honored, including in >8.2.0, so use it instead. Note that VTK_PYTHON_SITE_PACKAGES_SUFFIX does not help because it is appended after the lib directory in the path. Perhaps a deeper fix might be to figure out why the default lib dir is set to lib64 instead of lib. I didn't investigate this further. The ebuild already intends to override the default, and this commit just fixes that override. I don't know if the default dir is still broken in >8.2.0, i.e. whether it is still necessary for the >8.2.0 ebuilds to override the default installation directory. There have been related changes, though, see at least this commit that's not in 8.2.0 but is in master: commit 4c42ff417c209087bf0058a9eb2614928943156b Author: Ben Boeckel <ben.boeckel@kitware.com> Date: Thu Oct 18 13:17:11 2018 -0400 vtkPython: expose VTK_PYTHONPATH to consumers of VTK Signed-off-by: Alexei Colin <ac@alexeicolin.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/hdf5: fix build with slibtoolSam James2021-03-201-1/+4
| | | | | | | | | It's not completely clear how slibtool should've known to append -fPIC, but let's not worry too much for now. Closes: https://bugs.gentoo.org/775305 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/votca-tools: live ebuild updatesChristoph Junghans2021-03-191-1/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/openblas: add 0.3.14Sam James2021-03-172-0/+199
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/m4rie: new revision with patch for libm linking.Michael Orlitzky2021-03-162-1/+38
| | | | | | | | | | Thanks to Alessandro Barbieri, François Bissey, and Martin Albrecht (upstream) for getting this fixed quickly. This commit adds an -r1 with the backported patch and a call to eautoreconf. Closes: https://bugs.gentoo.org/775311 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* */*: Add proxied="yes" for non-@gentoo.org peopleMichał Górny2021-03-1629-29/+29
| | | | | | | | | | | | Done via: find -name metadata.xml -exec xml ed -P -L \ -a '/pkgmetadata/maintainer[substring(email, string-length(email) - string-length("@gentoo.org") + 1) != "@gentoo.org"]' \ -t attr -n proxied -v yes {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: Add 'proxied="proxy"' for proxy-maint projectMichał Górny2021-03-1616-16/+16
| | | | | | | | | | Done via: find -name metadata.xml -exec xml ed -P -L \ -a '//maintainer[email="proxy-maint@gentoo.org"]' \ -t attr -n proxied -v proxy {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>