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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit toolchain-funcs
DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="https://bio-bwa.sourceforge.net/"
SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~x64-macos"
RDEPEND="dev-lang/perl"
PATCHES=( "${FILESDIR}"/${PN}-0.7.15-Makefile.patch )
DOCS=( NEWS.md README-alt.md README.md )
src_configure() {
tc-export CC AR
}
src_install() {
dobin bwa
exeinto /usr/libexec/${PN}
doexe qualfa2fq.pl xa2multi.pl
einstalldocs
doman bwa.1
}
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