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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
inherit eutils toolchain-funcs
DESCRIPTION="A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment algorithm"
HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php"
SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
SLOT="0"
KEYWORDS="~amd64 ~x86"
LICENSE="public-domain"
IUSE="mpi_njtree static_pairalign"
DEPEND="virtual/mpi"
RDEPEND="${DEPEND}"
src_prepare() {
epatch "${FILESDIR}"/${PV}-gentoo.patch
if use mpi_njtree; then
sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
die "Failed to configure MPI code for NJ trees."
fi
if use static_pairalign; then
sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
die "Failed to configure static scheduling for pair alignments."
fi
}
src_install() {
dobin ${PN}
newdoc README.${PN} README
}
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