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cmake_minimum_required (VERSION 2.6)
project(fasttree C)
option(USE_OPENMP "Use OpenMP to parallelize many of the steps in computing a tree" ON)
option(USE_DOUBLE "Use double precission" OFF)
option(HAS_SSE3 "Use SSE2/SSE3 instructions to speed up some inner loops" ON)
if(USE_OPENMP)
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DOPENMP -fopenmp" )
SET( CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -DOPENMP -fopenmp" )
endif(USE_OPENMP)
if(USE_DOUBLE)
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DUSE_DOUBLE" )
endif(USE_DOUBLE)
if(NOT HAS_SSE3)
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DNO_SSE" )
endif(NOT HAS_SSE3)
add_executable(FastTree FastTree-${VERSION}.c)
add_executable(FastTreeUPGMA FastTreeUPGMA-${VERSION}.c)
target_link_libraries(FastTree m)
target_link_libraries(FastTreeUPGMA m)
install (TARGETS FastTree FastTreeUPGMA DESTINATION bin)
install(FILES MOTree.pm CompareTree.pl CompareToBootstrap.pl DESTINATION share/fasttree)
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