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diff -durr lagan20-orig/src/glocal/score.cpp lagan20/src/glocal/score.cpp
--- lagan20-orig/src/glocal/score.cpp 2009-02-04 15:25:57.698333297 +0000
+++ lagan20/src/glocal/score.cpp 2009-02-04 15:27:23.894092890 +0000
@@ -2,7 +2,7 @@
#include<score.h>
#include<leftinfluence.h>
#include<rightinfluence.h>
-#include<fstream.h>
+#include<fstream>
extern vector<class Score*> scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)];
diff -durr lagan20-orig/src/utils/Glue.cpp lagan20/src/utils/Glue.cpp
--- lagan20-orig/src/utils/Glue.cpp 2009-02-04 15:25:57.702333182 +0000
+++ lagan20/src/utils/Glue.cpp 2009-02-04 15:27:04.190822654 +0000
@@ -1,6 +1,7 @@
#include "MultiSequence.h"
#include "SafeVector.h"
#include "Output.h"
+#include <string.h>
#include <math.h>
#include <assert.h>
#include <fstream>
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