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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit autotools toolchain-funcs
DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="examples"
RDEPEND="
dev-lang/perl
=sci-libs/htslib-${PV}*
sys-libs/ncurses:0=
sys-libs/zlib:="
DEPEND="${RDEPEND}"
BDEPEND="virtual/pkgconfig"
src_prepare() {
default
# remove bundled htslib
rm -r htslib-* || die
eautoreconf
}
src_test() {
local -x LD_LIBRARY_PATH="${S}"
default
}
src_install() {
default
# varfilter.py has been retired upstream for being py2 only
rm "${ED}"/usr/bin/varfilter.py || die
if use examples; then
dodoc -r examples
docompress -x /usr/share/doc/${PF}/examples
fi
}
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