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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PERL_EXPORT_PHASE_FUNCTIONS=no
inherit perl-module eutils toolchain-funcs
MY_P="${PN}_${PV}"
DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
HOMEPAGE="http://vcftools.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
LICENSE="LGPL-3"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="lapack"
RDEPEND="lapack? ( virtual/lapack )"
DEPEND="${RDEPEND}
virtual/pkgconfig"
S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch "${FILESDIR}"/${P}-buildsystem.patch
tc-export CXX PKG_CONFIG
}
src_compile() {
local myconf
use lapack && myconf="VCFTOOLS_PCA=1"
emake -C cpp ${myconf}
}
src_install(){
perl_set_version
dobin cpp/${PN}
insinto ${VENDOR_LIB}
doins perl/*.pm
dobin perl/{fill,vcf}-*
dodoc README.txt
}
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