summaryrefslogtreecommitdiff
blob: 574e02209628de62aa1e22281a4dd55bc715c8ce (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=6

PYTHON_COMPAT=( python2_7 python3_{6,7} )
PYTHON_REQ_USE="threads(+)"

DOC_PV=${PV}

inherit fortran-2 distutils-r1 flag-o-matic git-r3 multiprocessing toolchain-funcs

DESCRIPTION="Scientific algorithms library for Python"
HOMEPAGE="https://www.scipy.org/"
EGIT_REPO_URI="https://github.com/scipy/scipy.git"

LICENSE="BSD LGPL-2"
SLOT="0"
KEYWORDS=""
IUSE="sparse test"
RESTRICT="!test? ( test )"

CDEPEND="
	>=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
	sci-libs/arpack:0=
	virtual/cblas
	virtual/lapack
	sparse? ( sci-libs/umfpack:0= )"
DEPEND="${CDEPEND}
	dev-lang/swig
	>=dev-python/cython-0.23.4[${PYTHON_USEDEP}]
	virtual/pkgconfig
	test? (	dev-python/nose[${PYTHON_USEDEP}] )
	"

RDEPEND="${CDEPEND}
	dev-python/pillow[${PYTHON_USEDEP}]"

DOCS=( HACKING.rst.txt THANKS.txt )

DISTUTILS_IN_SOURCE_BUILD=1

pc_incdir() {
	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
}

pc_libdir() {
	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
}

pc_libs() {
	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
}

python_prepare_all() {
	# scipy automatically detects libraries by default
	export {FFTW,FFTW3,UMFPACK}=None
	use sparse && unset UMFPACK
	# the missing symbols are in -lpythonX.Y, but since the version can
	# differ, we just introduce the same scaryness as on Linux/ELF
	[[ ${CHOST} == *-darwin* ]] \
		&& append-ldflags -bundle "-undefined dynamic_lookup" \
		|| append-ldflags -shared
	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
	# hack to force F77 to be FC until bug #278772 is fixed
	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
	export F90="${FC}"
	export SCIPY_FCONFIG="config_fc --noopt --noarch"
	append-fflags -fPIC

	local libdir="${EPREFIX}"/usr/$(get_libdir)
	cat >> site.cfg <<-EOF || die
		[blas]
		include_dirs = $(pc_incdir cblas)
		library_dirs = $(pc_libdir cblas blas):${libdir}
		blas_libs = $(pc_libs cblas blas)
		[lapack]
		library_dirs = $(pc_libdir lapack):${libdir}
		lapack_libs = $(pc_libs lapack)
	EOF

	# Drop hashes to force rebuild of cython based .c code
	rm cythonize.dat || die

	distutils-r1_python_prepare_all
}

python_compile() {
	${EPYTHON} tools/cythonize.py || die
	distutils-r1_python_compile \
		"-j $(makeopts_jobs)" \
		${SCIPY_FCONFIG}
}

python_test() {
	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
	distutils_install_for_testing ${SCIPY_FCONFIG}
	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
	einfo "Run test I"
	"${PYTHON}" -c \
		'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \
		|| die
	einfo "Run test II"
	# https://github.com/scipy/scipy/issues/5426
	"${EPYTHON}" -c \
		"import scipy, sys; r = scipy.test('fast', verbose=2, raise_warnings='release'); sys.exit(0 if r.wasSuccessful() else 1)" \
		|| die "Tests fail with ${EPYTHON}"
#	"${EPYTHON}" -c \
#		"import scipy, sys; r = scipy.test('fast',verbose=2); sys.exit(0 if r.wasSuccessful() else 1)" \
#		|| die "Tests fail with ${EPYTHON}"
}

python_install() {
	distutils-r1_python_install ${SCIPY_FCONFIG}
}

pkg_postinst() {
	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
	elog "to your prefered image viewer. Example:"
	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
}