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authorMichael Mair-Keimberger <m.mairkeimberger@gmail.com>2018-05-21 10:10:29 +0200
committerAaron Bauman <bman@gentoo.org>2018-05-21 13:02:41 -0400
commit81c2cb275e2ec201f8650a2a490cd2486314f94a (patch)
treedf378c2adc452f550a69062edc8e594d9156b094 /sci-biology
parentsci-libs/dcmtk: use HTTPs (diff)
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sci-biology/wgs-assembler: remove old
Closes: https://github.com/gentoo/gentoo/pull/8512
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild67
1 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild b/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild
deleted file mode 100644
index 066654dcfb92..000000000000
--- a/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG"
-HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="static-libs"
-
-DEPEND="
- x11-libs/libXt
- !x11-terms/terminator"
-RDEPEND="${DEPEND}
- app-shells/tcsh
- dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-build.patch
- tc-export CC CXX
-}
-
-src_configure() {
- cd "${S}/kmer"
- ./configure.sh || die
-}
-
-src_compile() {
- # not really an install target
- emake -C kmer -j1 install
- emake -C src -j1 SITE_NAME=LOCAL
-}
-
-src_install() {
- OSTYPE=$(uname)
- MACHTYPE=$(uname -m)
- MACHTYPE=${MACHTYPE/x86_64/amd64}
- MY_S="${OSTYPE}-${MACHTYPE}"
- sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
- sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
- sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
- sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
- dobin kmer/${MY_S}/bin/*
- insinto /usr/$(get_libdir)/${PN}
- use static-libs && doins kmer/${MY_S}/lib/*
-
- insinto /usr/include/${PN}
- doins kmer/${MY_S}/include/*
-
- insinto /usr/share/${PN}/lib
- doins -r ${MY_S}/bin/TIGR
- rm -rf ${MY_S}/bin/TIGR || die
- dobin ${MY_S}/bin/*
- use static-libs && dolib.a ${MY_S}/lib/*
- dodoc README
-}