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Diffstat (limited to 'sci-biology/velvet/velvet-1.2.10.ebuild')
-rw-r--r--sci-biology/velvet/velvet-1.2.10.ebuild12
1 files changed, 6 insertions, 6 deletions
diff --git a/sci-biology/velvet/velvet-1.2.10.ebuild b/sci-biology/velvet/velvet-1.2.10.ebuild
index 53f5dd644f91..31560aee1886 100644
--- a/sci-biology/velvet/velvet-1.2.10.ebuild
+++ b/sci-biology/velvet/velvet-1.2.10.ebuild
@@ -26,7 +26,7 @@ src_prepare() {
if ! use doc; then
sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
fi
- elog "Upstream recommendes using -O3 in CFLAGS"
+ elog "Upstream recommends using -O3 in CFLAGS"
echo
elog "To adjust the MAXKMERLENGTH, CATEGORIES, BIGASSEMBLY, LONGSEQUENCES parameters"
elog "as described in the PDF manual, please set the variables by prepending VELVET_ in"
@@ -53,11 +53,11 @@ src_prepare() {
CFLAGS="${CFLAGS}"
OPT="${CFLAGS}"
)
- if use openmp; then MAKE_XOPTS+=( OPENMP=1 ); fi
- if [[ ${VELVET_MAXKMERLENGTH} != "" ]]; then MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} ); fi
- if [[ ${VELVET_CATEGORIES} != "" ]]; then MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} ); fi
- if [[ ${VELVET_BIGASSEMBLY} != "" ]]; then MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} ); fi
- if [[ ${VELVET_LONGSEQUENCES} != "" ]]; then MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} ); fi
+ use openmp && MAKE_XOPTS+=( OPENMP=1 )
+ test "${VELVET_MAXKMERLENGTH}" != "" && MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} )
+ test "${VELVET_CATEGORIES}" != "" && MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} )
+ test "${VELVET_BIGASSEMBLY}" != "" && MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} )
+ test "${VELVET_LONGSEQUENCES}" != "" && MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} )
}
src_compile() {