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Diffstat (limited to 'sci-chemistry/coot/coot-0.7.2.ebuild')
-rw-r--r--sci-chemistry/coot/coot-0.7.2.ebuild165
1 files changed, 165 insertions, 0 deletions
diff --git a/sci-chemistry/coot/coot-0.7.2.ebuild b/sci-chemistry/coot/coot-0.7.2.ebuild
new file mode 100644
index 000000000000..54e430017fc2
--- /dev/null
+++ b/sci-chemistry/coot/coot-0.7.2.ebuild
@@ -0,0 +1,165 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+AUTOTOOLS_AUTORECONF="true"
+
+inherit autotools-utils python-single-r1 toolchain-funcs versionator
+
+MY_S2_PV=$(replace_version_separator 2 - ${PV})
+MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
+MY_S_P=${MY_S2_P}-${PR/r/revision-}
+MY_PV=${PV}
+MY_P=${PN}-${MY_PV}
+
+DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
+HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
+SRC_URI="
+ http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz
+ test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+openmp static-libs test"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+AUTOTOOLS_IN_SOURCE_BUILD=1
+
+SCIDEPS="
+ >=sci-libs/ccp4-libs-6.1
+ sci-libs/clipper
+ >=sci-libs/coot-data-2
+ >=sci-libs/gsl-1.3
+ >=sci-libs/mmdb-1.23:0
+ sci-libs/ssm
+ sci-libs/monomer-db
+ sci-chemistry/reduce
+ sci-chemistry/refmac
+ sci-chemistry/probe"
+
+XDEPS="
+ gnome-base/libgnomecanvas
+ gnome-base/librsvg:2
+ media-libs/libpng
+ media-libs/freeglut
+ x11-libs/gtk+:2
+ x11-libs/goocanvas:0
+ x11-libs/gtkglext"
+
+SCHEMEDEPS="
+ dev-scheme/net-http
+ dev-scheme/guile-gui
+ >=dev-scheme/guile-lib-0.1.6
+ dev-scheme/guile-www
+ >=x11-libs/guile-gtk-2.1"
+
+RDEPEND="
+ ${SCIDEPS}
+ ${XDEPS}
+ ${SCHEMEDEPS}
+ ${PYTHON_DEPS}
+ dev-python/pygtk:2[${PYTHON_USEDEP}]
+ >=dev-libs/gmp-4.2.2-r2
+ >=net-misc/curl-7.19.6
+ net-dns/libidn"
+DEPEND="${RDEPEND}
+ >=sys-devel/libtool-2.4-r2
+ dev-lang/swig
+ sys-devel/bc
+ test? ( dev-scheme/greg )"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_setup() {
+ if use openmp; then
+ tc-has-openmp || die "Please use an OPENMP capable compiler"
+ fi
+ python-single-r1_pkg_setup
+}
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-0.7-clipper-config.patch
+ "${FILESDIR}"/${PN}-0.7-goocanvas.patch
+ "${FILESDIR}"/${PN}-0.7-mmdb-config.patch
+ )
+
+src_prepare() {
+ sed \
+ -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-${EPYTHON}-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
+ -i configure.in || die
+
+ autotools-utils_src_prepare
+}
+
+src_configure() {
+ # All the --with's are used to activate various parts.
+ # Yes, this is broken behavior.
+ local myeconfargs=(
+ --includedir='${prefix}/include/coot'
+ --with-goocanvas-prefix="${EPREFIX}/usr"
+ --with-guile
+ --with-python="${EPREFIX}/usr"
+ --with-guile-gtk
+ --with-gtk2
+ --with-pygtk
+ $(use_enable openmp)
+ )
+ autotools-utils_src_configure
+}
+
+src_compile() {
+ autotools-utils_src_compile
+ cp "${S}"/src/coot_gtk2.py python/coot.py || die
+}
+
+src_test() {
+ source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
+ mkdir "${T}"/coot_test
+
+ export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
+ export COOT_SCHEME_DIR="${S}/scheme/"
+ export COOT_RESOURCES_FILE="${S}/cootrc"
+ export COOT_PIXMAPS_DIR="${S}/pixmaps/"
+ export COOT_DATA_DIR="${S}/"
+ export COOT_PYTHON_DIR="${S}/python/"
+ export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
+ export PYTHONHOME="${EPREFIX}"/usr/
+ export CCP4_SCR="${T}"/coot_test/
+ export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
+ export SYMINFO="${S}/syminfo.lib"
+
+ export COOT_TEST_DATA_DIR="${WORKDIR}"/greg-data
+
+ cat > command-line-greg.scm <<- EOF
+ (use-modules (ice-9 greg))
+ (set! greg-tools (list "greg-tests"))
+ (set! greg-debug #t)
+ (set! greg-verbose 5)
+ (let ((r (greg-test-run)))
+ (if r
+ (coot-real-exit 0)
+ (coot-real-exit 1)))
+ EOF
+
+ einfo "Running test with following paths ..."
+ einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
+ einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
+ einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
+ einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
+ einfo "COOT_DATA_DIR $COOT_DATA_DIR"
+ einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
+ einfo "PYTHONPATH $PYTHONPATH"
+ einfo "PYTHONHOME $PYTHONHOME"
+ einfo "CCP4_SCR ${CCP4_SCR}"
+ einfo "CLIBD_MON ${CLIBD_MON}"
+ einfo "SYMINFO ${SYMINFO}"
+
+ "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
+ "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
+}