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Diffstat (limited to 'sci-chemistry/parassign/parassign-20130522.ebuild')
-rw-r--r-- | sci-chemistry/parassign/parassign-20130522.ebuild | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/sci-chemistry/parassign/parassign-20130522.ebuild b/sci-chemistry/parassign/parassign-20130522.ebuild new file mode 100644 index 000000000000..8ecbd0060d10 --- /dev/null +++ b/sci-chemistry/parassign/parassign-20130522.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 python-r1 + +DESCRIPTION="Assign protein nuclei solely on the basis of pseudocontact shifts (PCS)" +HOMEPAGE="http://protchem.lic.leidenuniv.nl/software/parassign/registration" +SRC_URI="PARAssign_Linux_x64_86.tgz" +RESTRICT="fetch" + +SLOT="0" +LICENSE="Apache-2.0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS}" +DEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/scientificpython[${PYTHON_USEDEP}] + sci-biology/biopython[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" + +S="${WORKDIR}"/PARAssign_Linux_x64_86/ + +src_prepare() { + sed \ + -e '1i#!/usr/bin/python2' \ + -i code/*py || die + + if use x86; then + sed \ + -e "s:munkres64:munkres:g" \ + -i modules/setup.py || die + elif use amd64; then + sed \ + -e "s:munkres:munkres64:g" \ + -i code/*py || die + fi + cd modules || die + rm *o *c || die + distutils-r1_src_prepare +} + +src_compile() { + cd modules || die + distutils-r1_src_compile +} + +src_install() { + python_parallel_foreach_impl python_doscript code/* || die + + dodoc PARAssign_Tutorial.pdf README + + cd modules || die + distutils-r1_src_install +} |