diff options
Diffstat (limited to 'sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch')
| -rw-r--r-- | sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch | 168 |
1 files changed, 168 insertions, 0 deletions
diff --git a/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch new file mode 100644 index 000000000000..ec4220dd0695 --- /dev/null +++ b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch @@ -0,0 +1,168 @@ + Makefile | 106 +++++++++++++++++++++++++++++++++++++-------------------------- + 1 file changed, 63 insertions(+), 43 deletions(-) + +diff --git a/Makefile b/Makefile +index 15d4bd3..e738ec2 100644 +--- a/Makefile ++++ b/Makefile +@@ -4,7 +4,7 @@ + # Last modified: Feb/22/2012 + # + +-CFLAGS = -O3 ++CFLAGS ?= -O3 + MFLAGS = -lm + + TARGETS = xyza2pipe ucsf2pipe nv2pipe xeasy2pipe azara2pipe vnmr2pipe xwnmr2pipe\ +@@ -62,89 +62,109 @@ clean: + rm -f $(TARGETS) addxyza2pipe + + $(OBJECTS_MATH): +- $(CC) $*.c -c -o $@ $(CFLAGS) -D__XYZA2PIPE__ ++ $(CC) $(CPPFLAGS) -D__XYZA2PIPE__ $(CFLAGS) $*.c -c -o $@ + + .o: +- $(CC) $< -c -o $@ $(CFLAGS) ++ $(CC) $(CPPFLAGS) $(CFLAGS) $< -c -o $@ + + xyza2pipe: $(OBJECTS_C) $(OBJECTS_XP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2xyza: $(OBJECTS_C) $(OBJECTS_PX) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + ucsf2pipe: $(OBJECTS_C) $(OBJECTS_UP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2ucsf: $(OBJECTS_C) $(OBJECTS_PU) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + nv2pipe: $(OBJECTS_C) $(OBJECTS_NP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2nv: $(OBJECTS_C) $(OBJECTS_PN) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + xeasy2pipe: $(OBJECTS_C) $(OBJECTS_EP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2xeasy: $(OBJECTS_C) $(OBJECTS_PE) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + azara2pipe: $(OBJECTS_C) $(OBJECTS_AP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2azara: $(OBJECTS_C) $(OBJECTS_PA) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + vnmr2pipe: $(OBJECTS_C) $(OBJECTS_VP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + xwnmr2pipe: $(OBJECTS_C) $(OBJECTS_BP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + pipe2proj: $(OBJECTS_C) $(OBJECTS_PJ) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + add2pipe: $(OBJECTS_C) $(OBJECTS_DXP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + rm -f addxyza2pipe + ln -s add2pipe addxyza2pipe + + adducsf2pipe: $(OBJECTS_C) $(OBJECTS_DUP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + addnv2pipe: $(OBJECTS_C) $(OBJECTS_DNP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + addxeasy2pipe: $(OBJECTS_C) $(OBJECTS_DEP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + addazara2pipe: $(OBJECTS_C) $(OBJECTS_DAP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + addvnmr2pipe: $(OBJECTS_C) $(OBJECTS_DVP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ + + addxwnmr2pipe: $(OBJECTS_C) $(OBJECTS_DBP) +- $(CC) $@.c $^ -o $@ \ +- $(CFLAGS) $(MFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \ ++ $(MFLAGS) ++ mv -v $@ bin/ |