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diff -Naur mead-2.2.7-orig/apps/libmso/Makefile.in mead-2.2.7/apps/libmso/Makefile.in
--- mead-2.2.7-orig/apps/libmso/Makefile.in 2004-12-10 14:33:49.000000000 -0600
+++ mead-2.2.7/apps/libmso/Makefile.in 2009-02-15 16:32:40.000000000 -0600
@@ -35,8 +35,8 @@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
ALL_CPPFLAGS = -I. $(LOCALINCS) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS)
-ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS)
-ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS)
+ALL_CXXFLAGS = @CXXFLAGS@
+ALL_CFLAGS = @CFLAGS@
.SUFFIXES:
.SUFFIXES: .cc .o
diff -Naur mead-2.2.7-orig/apps/Makefile.common.in mead-2.2.7/apps/Makefile.common.in
--- mead-2.2.7-orig/apps/Makefile.common.in 2004-11-19 16:49:56.000000000 -0600
+++ mead-2.2.7/apps/Makefile.common.in 2009-02-15 16:32:22.000000000 -0600
@@ -36,10 +36,10 @@
LIBS = @LIBS@ -lm
ALL_CPPFLAGS = -I. $(LOCALINCS) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS)
-ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS)
-ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS)
+ALL_CXXFLAGS = @CXXFLAGS@
+ALL_CFLAGS = @CFLAGS@
-CXXLINK = $(CXX) $(ALL_CPPFLAGS) $(CXX_DEBUGFLAGS) $(CXX_OPTFLAGS) \
+CXXLINK = $(CXX) $(ALL_CPPFLAGS) @CXXFLAGS@ \
$(LDFLAGS)
.SUFFIXES: .cc .o
diff -Naur mead-2.2.7-orig/libmead/Makefile.in mead-2.2.7/libmead/Makefile.in
--- mead-2.2.7-orig/libmead/Makefile.in 2008-03-04 14:18:22.000000000 -0600
+++ mead-2.2.7/libmead/Makefile.in 2009-02-15 16:31:56.000000000 -0600
@@ -99,8 +99,8 @@
INCLUDES = -I$(top_srcdir)
ALL_CPPFLAGS = $(INCLUDES) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS)
-ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS) $(CXX_SHAREDFLAGS)
-ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS)
+ALL_CXXFLAGS = @CXXFLAGS@
+ALL_CFLAGS = @CFLAGS@
diff -Naur mead-2.2.7-orig/swig/Makefile.in mead-2.2.7/swig/Makefile.in
--- mead-2.2.7-orig/swig/Makefile.in 2007-11-27 15:57:17.000000000 -0600
+++ mead-2.2.7/swig/Makefile.in 2009-02-15 16:34:35.000000000 -0600
@@ -58,7 +58,7 @@
CXX_FLAGS = @CXX_NOOPTFLAGS@ @CXX_DEBUGFLAGS@ @CXX_SHAREDFLAGS@
CXX_DYNLIB_FLAGS = @CXX_DYNLIB_FLAGS@
-ALL_CXXFLAGS = $(CPP_FLAGS) $(CXX_FLAGS)
+ALL_CXXFLAGS = $(CPP_FLAGS) @CXXFLAGS@ @CXX_SHAREDFLAGS@
MEADINC = -I$(top_srcdir) -I$(srcdir)
MEADLIBS = -L../libmead -lmead
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