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diff -aurN NAMD_2.7b1_Source.orig/Make.charm NAMD_2.7b1_Source/Make.charm
--- NAMD_2.7b1_Source.orig/Make.charm 2009-06-07 15:15:11.000000000 -0500
+++ NAMD_2.7b1_Source/Make.charm 2009-06-07 15:15:11.000000000 -0500
@@ -2,5 +2,5 @@
# The config script will override this setting if there is a directory
# called charm-6.1 or charm in the NAMD base directory.
-CHARMBASE = /Projects/namd2/charm-6.1
+CHARMBASE = /usr/include/charm-6.1.2
diff -aurN NAMD_2.7b1_Source.orig/Makefile NAMD_2.7b1_Source/Makefile
--- NAMD_2.7b1_Source.orig/Makefile 2009-06-07 15:15:11.000000000 -0500
+++ NAMD_2.7b1_Source/Makefile 2009-06-07 15:15:11.000000000 -0500
@@ -297,10 +297,10 @@
$(DSTDIR)/stringhash.o
# definitions for Charm routines
-CHARMC = $(CHARM)/bin/charmc
-CHARMXI = $(CHARM)/bin/charmc
-CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1
-CHARMLIB = $(CHARM)/lib
+CHARMC = /usr/bin/charmc
+CHARMXI = /usr/bin/charmc
+CHARMINC = /usr/include/gentoo-charm $(COPTD)CMK_OPTIMIZE=1
+CHARMLIB = /usr/gentoo-libdir
# Libraries we may have changed
LIBS = $(CUDAOBJS) $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL)
@@ -320,7 +320,7 @@
# Add new executables here.
-BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb
+BINARIES = namd2 psfgen flipdcd flipbinpdb
# This should be rebuilt at every compile, but not on Win32.
BUILDINFO = $(DSTDIR)/buildinfo
@@ -351,14 +351,6 @@
$(CHARMOPTS) \
-lm -o namd2
-charmrun: $(CHARM)/bin/charmrun # XXX
- $(COPY) $(CHARM)/bin/charmrun $@
-
-WINDOWSBINARIES = namd2.exe psfgen.exe
-# WINDOWSBINARIES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe
-
-windowsbinaries: $(WINDOWSBINARIES)
-
namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) $(TCLDLL)
$(MAKEBUILDINFO)
$(CHARMC) -verbose \
@@ -381,9 +373,6 @@
charmd_faceless.exe:
$(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe
-charmrun.exe:
- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe
-
psfgen: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS)
$(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm
@@ -700,9 +689,7 @@
DOC_FILES = README.txt announce.txt license.txt notes.txt
-RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2
-
-WINDOWS_RELEASE_FILES = $(WINDOWSBINARIES) $(TCLDLL)
+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2
release: all
$(ECHO) Creating release $(RELEASE_DIR_NAME)
@@ -711,17 +698,9 @@
for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done
cp -r .rootdir/lib $(RELEASE_DIR_NAME)
/bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS
- if [ -r $(CHARM)/bin/charmd ]; then \
- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \
- fi
- if [ -r $(CHARM)/bin/charmd_faceless ]; then \
- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \
- fi
chmod -R a+rX $(RELEASE_DIR_NAME)
tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME)
gzip $(RELEASE_DIR_NAME).tar
- echo $(CHARM)
- ls -l $(CHARM)/lib
-for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done
winrelease: winall
diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw NAMD_2.7b1_Source/arch/Linux-x86_64.fftw
--- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500
+++ NAMD_2.7b1_Source/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500
@@ -1,7 +1,7 @@
-FFTDIR=/Projects/namd2/fftw/linux-x86_64
+FFTDIR=/usr
FFTINCL=-I$(FFTDIR)/include
-FFTLIB=-L$(FFTDIR)/lib -lsrfftw -lsfftw
+FFTLIB=-L$(FFTDIR)/gentoo-libdir -lsrfftw -lsfftw
FFTFLAGS=-DNAMD_FFTW
FFT=$(FFTINCL) $(FFTFLAGS)
diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl NAMD_2.7b1_Source/arch/Linux-x86_64.tcl
--- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl 2009-06-07 15:15:11.000000000 -0500
+++ NAMD_2.7b1_Source/arch/Linux-x86_64.tcl 2009-06-07 18:25:07.000000000 -0500
@@ -1,7 +1,7 @@
-TCLDIR=/Projects/namd2/tcl/linux-x86_64
+TCLDIR=/usr
TCLINCL=-I$(TCLDIR)/include
-TCLLIB=-L$(TCLDIR)/lib -ltcl8.3 -ldl
+TCLLIB=-L$(TCLDIR)/gentoo-libdir -ltcl -ldl
TCLFLAGS=-DNAMD_TCL
TCL=$(TCLINCL) $(TCLFLAGS)
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