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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=3
inherit eutils toolchain-funcs multilib prefix
MY_P="${PN}-v${PV}-prod-src"
DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
LICENSE="PDB"
SLOT="0"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
IUSE=""
RDEPEND="!<app-text/html-xml-utils-5.3"
DEPEND="${RDEPEND}
>=sci-libs/cifparse-obj-7.025"
S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch \
"${FILESDIR}"/${P}-cflags-install.patch \
"${FILESDIR}"/${P}-gcc-4.3.patch \
"${FILESDIR}"/${P}-Makefile.patch \
"${FILESDIR}"/${P}-env.patch
sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \
pdb-extract-v3.0/Makefile \
|| die "Failed to fix libdir"
# Get rid of unneeded directories, to make sure we use system files
ebegin "Deleting redundant directories"
rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \
misclib-v2.2 regex-v2.2 tables-v8.0
eend
sed -i \
-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
"${S}"/etc/make.* \
|| die "Failed to fix makefiles"
eprefixify pdb-extract-v3.0/Makefile etc/*
}
src_install() {
exeinto /usr/libexec/ccp4/bin
doexe bin/pdb_extract{,_sf} bin/extract \
|| die "failed to install binaries"
insinto /usr/include/rcsb
doins include/* || die "failed to install include files"
dodoc README* || die "failed to install docs"
insinto /usr/share/rcsb/
doins -r pdb-extract-data || die "failed to install data files"
cat >> "${T}"/envd <<- EOF
PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/"
PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
EOF
newenvd "${T}"/envd 20pdb-extract \
|| die "failed to install env files"
}
|
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