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| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-04-25 13:26:06 +0200 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-04-25 13:26:06 +0200 |
| commit | 0ceb993976976439639c7414d3e2aa2be5bb64de (patch) | |
| tree | 6638caa21cdadab365ab4e5b83202a4f038a3ee2 | |
| parent | sci-biology/signalp: treeclean (diff) | |
| download | sci-0ceb993976976439639c7414d3e2aa2be5bb64de.tar.gz sci-0ceb993976976439639c7414d3e2aa2be5bb64de.tar.bz2 sci-0ceb993976976439639c7414d3e2aa2be5bb64de.zip | |
sci-biology/tmhmm: treeclean
Bug: https://bugs.gentoo.org/902383
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/tmhmm/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/tmhmm/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/tmhmm/tmhmm-2.0c.ebuild | 39 |
4 files changed, 0 insertions, 49 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index 51da8d80c..15acd8546 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -41,7 +41,6 @@ sci-biology/RSeQC # Andrew Ammerlaan <andrewammerlaan@gentoo.org) (10 Feb 2023) # Fetch restricted ebuilds without proper manifest entry -sci-biology/tmhmm sci-chemistry/ligplot+ sci-chemistry/nmrview sci-chemistry/rosetta-tools diff --git a/sci-biology/tmhmm/Manifest b/sci-biology/tmhmm/Manifest deleted file mode 100644 index 875ce562e..000000000 --- a/sci-biology/tmhmm/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST tmhmm-2.0c.Linux.tar.gz 191561 SHA256 761a87ca82c174e0e6660c5065f257ef0b201fab98f934e1342291e4e673ca40 diff --git a/sci-biology/tmhmm/metadata.xml b/sci-biology/tmhmm/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/tmhmm/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild deleted file mode 100644 index dc50101fa..000000000 --- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prediction of transmembrane helices in proteins" -HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/" -SRC_URI="${P}.Linux.tar.gz" - -LICENSE="tmhmm" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -RESTRICT="fetch" - -S="TMHMM${PV}" - -pkg_nofetch() { - einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"${SRC_URI}\", then place it into your DISTDIR folder" -} - -src_prepare() { - default - sed -i '1 i #!/usr/bin/env perl' "${S}"/bin/tmhmm* || die - sed -i '1 a $opt_basedir = "/opt/tmhmm";' "${S}"/bin/tmhmm || die -} - -src_install() { - exeinto /opt/${PN}/bin - doexe bin/* - - insinto /opt/${PN}/lib - doins lib/* - - dosym ../${PN}/bin/tmhmm /opt/bin/tmhmm - - dodoc README TMHMM2.0.html -} |