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| author |   Horea Christian <horea.christ@yandex.com> | 2019-01-17 22:21:13 +0100 |
|---|---|---|
| committer | Horea Christian <horea.christ@yandex.com> | 2019-01-17 22:23:01 +0100 |
| commit | 1ac50c41899fc23bf770661caca378dcd6457a64 (patch) | |
| tree | 0e1fa4556c7c6aafec8f4011865bc11362110e99 | |
| parent | sci-biology/blasr: partial improvements of the ebuild (diff) | |
| download | sci-1ac50c41.tar.gz sci-1ac50c41.tar.bz2 sci-1ac50c41.zip | |
sci-biology/samri: added prefix support
Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ@yandex.com>
| -rw-r--r-- | sci-biology/samri/samri-9999.ebuild | 18 |
1 files changed, 14 insertions, 4 deletions
diff --git a/sci-biology/samri/samri-9999.ebuild b/sci-biology/samri/samri-9999.ebuild index 4f2c64bc7..8a6bc65ae 100644 --- a/sci-biology/samri/samri-9999.ebuild +++ b/sci-biology/samri/samri-9999.ebuild @@ -5,7 +5,7 @@ EAPI=7 PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) -inherit distutils-r1 git-r3 +inherit distutils-r1 git-r3 prefix DESCRIPTION="Small Animal Magnetic Resonance Imaging" HOMEPAGE="https://github.com/IBT-FMI/SAMRI" @@ -50,14 +50,24 @@ RDEPEND=" REQUIRED_USE="test? ( atlases )" +src_prepare() { + distutils-r1_src_prepare + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ *` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \"/usr/ *` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` + eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) +} + python_test() { distutils_install_for_testing export MPLBACKEND="agg" export PATH=${TEST_DIR}/scripts:$PATH export PYTHONIOENCODING=utf-8 ./test_scripts.sh || die "Test scripts failed." - sed -i -e \ - "/def test_bru2bids():/i@pytest.mark.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ - samri/pipelines/tests/test_repos.py || die + sed -i \ + -e '1s/^/import pytest \n/' \ + -e "/def test_bru2bids():/i@pytest.mark.skip('Skipped by Portage, as this was already tested in test_scripts.sh')" \ + samri/pipelines/tests/test_reposit.py || die + cd "${BUILD_DIR}" || die pytest -vv || die } |