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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-03-31 18:19:08 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-03-31 18:19:08 +0200 |
| commit | 3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0 (patch) | |
| tree | 808e191c5edea4e34b53d1737c50898e1427b460 | |
| parent | sci-biology/augustus: version bump, new license (temporarily), new dependenci... (diff) | |
| download | sci-3b0ca41e.tar.gz sci-3b0ca41e.tar.bz2 sci-3b0ca41e.zip | |
sci-biology/abacas: new package
Package-Manager: portage-2.2.18
| -rw-r--r-- | sci-biology/abacas/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/abacas/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/abacas/abacas-1.3.1.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/abacas/metadata.xml | 9 |
4 files changed, 52 insertions, 0 deletions
diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog new file mode 100644 index 000000000..7f3ad388a --- /dev/null +++ b/sci-biology/abacas/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/abacas +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*abacas-1.3.1 (31 Mar 2015) + + 31 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +abacas-1.3.1.ebuild, +metadata.xml: + sci-biology/abacas: new package diff --git a/sci-biology/abacas/Manifest b/sci-biology/abacas/Manifest new file mode 100644 index 000000000..f95aff4f7 --- /dev/null +++ b/sci-biology/abacas/Manifest @@ -0,0 +1 @@ +DIST abacas.1.3.1.pl 64936 SHA256 0afee209a4f879987b320e2f882bc0eab540a7a712a81a5f01b9795d2749310d SHA512 5b60f85439ab751e4b43eba827dc8b4a8ad7d3acbbdc1f13a0f83e227cf8eb4d94dd5a32c4e6e37aa4e263758973ada5ab8e476685c56b6856c06218b547f76f WHIRLPOOL 5b99ee3aab66f06ccd74f4393dff42f1525a8b2c2c7679dfde180bb2262dd4c9d2d3a45585ed39d10f38c6f53d3b3089be9c65ee1b22d90938fcc09c8da14500 diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild new file mode 100644 index 000000000..e44862d18 --- /dev/null +++ b/sci-biology/abacas/abacas-1.3.1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Order and orientate contigs, design primers for gap closing" +HOMEPAGE="http://abacas.sourceforge.net" +SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl" + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl + sci-biology/mummer" + +S="${WORKDIR}" + +src_prepare(){ + cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die + sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die +} +src_install(){ + dobin abacas.pl +} + +pkg_postinst(){ + einfo "To view the results use Artemis ACT (sci-biology/artemis)" +} diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/abacas/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |