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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-01-22 16:17:58 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-01-22 16:17:58 +0100 |
| commit | 458e1564c2fa03fefffd8a8f9dc8975d95f26c3f (patch) | |
| tree | c52b8e0a3fa2e3fca0041aafe8023544ebc251bc | |
| parent | sci-libs/io_lib: add libdeflate to USE flags and require it (diff) | |
| download | sci-458e1564.tar.gz sci-458e1564.tar.bz2 sci-458e1564.zip | |
sci-libs/libmaus2: upstream moved from github to gitlab
https://github.com/gt1/libmaus2/issues/28#issuecomment-456336598
Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
| -rw-r--r-- | sci-libs/libmaus2/Manifest | 2 | ||||
| -rw-r--r-- | sci-libs/libmaus2/libmaus2-2.0.587.ebuild (renamed from sci-libs/libmaus2/libmaus2-2.0.499.ebuild) | 15 | ||||
| -rw-r--r-- | sci-libs/libmaus2/libmaus2-9999.ebuild | 11 |
3 files changed, 13 insertions, 15 deletions
diff --git a/sci-libs/libmaus2/Manifest b/sci-libs/libmaus2/Manifest index 51c8ba1af..3b40b8924 100644 --- a/sci-libs/libmaus2/Manifest +++ b/sci-libs/libmaus2/Manifest @@ -1 +1 @@ -DIST 2.0.499-release-20180606122508.tar.gz 3610083 BLAKE2B 6495ba6eff89331544bb8999728cca0d86eba6dc0b9cf65aad298b0153f3d7d9c521b8eee6351972f10db0ae1de5ec554d4c149f57b9e3c31a376297d2fb0594 SHA512 b8ce37f0d2dc74bca2ee175c533338d86a60cff26219c9f7f050448fc544980e7ed4b7cefa17fb67fb0f42c8b11cae8d832f37bb2afa23379a7ce2e229d4f990 +DIST libmaus2-2.0.587.tar.gz 3692835 BLAKE2B 624c19d065f4f383888baacf228c53c76f2ff63b425e251b82687a6932c89b069974771f0c15d5bb6d2054ecaa323f0d8c8562572d566044089315c12dd8a2e6 SHA512 f0df4832f8bf7104550ea348653664049d116dfec19132cff71046269e87a4b396f9325abe1a9bea549dd2880931bf68427704df60b88016ff74ab9ffed9ec3e diff --git a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild index cebe44161..1c61df056 100644 --- a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild +++ b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -7,36 +7,35 @@ inherit autotools DESCRIPTION="Library for biobambam2" HOMEPAGE="https://github.com/gt1/libmaus" -SRC_URI="https://github.com/gt1/libmaus2/archive/2.0.499-release-20180606122508.tar.gz" +SRC_URI="https://gitlab.com/german.tischler/libmaus2/-/archive/master/${P}.tar.gz" LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" DEPEND=" !sci-libs/libmaus - sci-libs/io_lib + >=sci-libs/io_lib-1.14.11 app-arch/snappy - sci-biology/seqan sci-libs/fftw sci-libs/hdf5 net-libs/gnutls dev-libs/nettle" # --with-daligner # --with-irods -S="${WORKDIR}"/libmaus2-2.0.499-release-20180606122508 +S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901 src_configure(){ local CONFIG_OPTS use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) - econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + econf --with-snappy --with-io_lib $CONFIG_OPTS \ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw } pkg_postinst(){ - einfo "The io_lib, snappy and seqan dependencies are not strictly needed" + einfo "The io_lib, snappy dependencies are not strictly needed" einfo "but were forced for optimal libmaus2 performance." einfo "igzip is only used if gzip level is set to 11." } diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild index 01aa74a92..c371d5432 100644 --- a/sci-libs/libmaus2/libmaus2-9999.ebuild +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -7,7 +7,7 @@ inherit autotools git-r3 DESCRIPTION="Library for biobambam2" HOMEPAGE="https://github.com/gt1/libmaus" -EGIT_REPO_URI="https://github.com/gt1/libmaus2.git" +EGIT_REPO_URI="https://gitlab.com/german.tischler/libmaus2" LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS SLOT="0" @@ -16,9 +16,8 @@ IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" DEPEND=" !sci-libs/libmaus - sci-libs/io_lib + >=sci-libs/io_lib-1.14.11 app-arch/snappy - sci-biology/seqan sci-libs/fftw sci-libs/hdf5 net-libs/gnutls @@ -35,12 +34,12 @@ src_configure(){ local CONFIG_OPTS use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) - econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + econf --with-snappy --with-io_lib $CONFIG_OPTS \ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw } pkg_postinst(){ - einfo "The io_lib, snappy and seqan dependencies are not strictly needed" + einfo "The io_lib, snappy dependencies are not strictly needed" einfo "but were forced for optimal libmaus2 performance." einfo "igzip is only used if gzip level is set to 11." } |