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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 05:51:13 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 05:51:13 +0100 |
| commit | d4d0d1524160afa9709b58edeb13c0dd1eff7c9f (patch) | |
| tree | 0f7c93436a728dc5dcc089ab6ec71e8ba695f5bc | |
| parent | sci-chemistry/mddnmr: drop pack, py2 only (diff) | |
| download | sci-d4d0d152.tar.gz sci-d4d0d152.tar.bz2 sci-d4d0d152.zip | |
sci-biology/scaffold_builder: drop pack, py2 only
checked the code, and this is still py2 style
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/scaffold_builder/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/scaffold_builder/metadata.xml | 15 | ||||
| -rw-r--r-- | sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild | 39 |
3 files changed, 0 insertions, 57 deletions
diff --git a/sci-biology/scaffold_builder/Manifest b/sci-biology/scaffold_builder/Manifest deleted file mode 100644 index a78b28651..000000000 --- a/sci-biology/scaffold_builder/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST Manual_v2.1.pdf 25897 BLAKE2B 8a5a54609554904e8c29102df6588c7b4ea50e69bebf286ebb0e6c7fcca497ab4f0d7642e36458b3776ac0d2df50f9ad8ae6838a47f21eda79c53c12d0f273c1 SHA512 48ba5fcd33ba7585c970d29df477686afe19ed0d0d30184661cab3ac10e39fdbce6174ec85a126c18eac038c62464068b5c012a70ca256c9ec5c7ef4032710ab -DIST scaffold_builder_v2.2.zip 20963 BLAKE2B ffd21d3d353cc075507fd23b98c36f085992abcd365d725d6251f15f049e2de39bd287a60c14d1788d135dbad3deac38c39fb11c62c2a9f01f3a1f3ab10ab8c1 SHA512 cb728a705f82324cf45674252e7d47413f4a70d728d147a7421335ae836d9d209b8f6b0c4b0ae10ce3ba9b2ab7928a0c6c63a58fae53b05c66578579faec029c -DIST scaffold_builder_v2_help.doc 50176 BLAKE2B 2b49f43a89c58045f67adc48b8ba3b91325e9d8bf9bb22b4048d60dfebb39a5d3acea54813fe84bce78fa91dbeb2898923cc67e7acdf3aaff7bdb32ef1cc4758 SHA512 1c3fdf085864a9a1cf684578af468166e4034c55a5576ab3d190443c323272152dcc19678d509cb2cccb3aac15570861f7483f4400638c8ef5af7aa1a6689ff2 diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml deleted file mode 100644 index 0f267b755..000000000 --- a/sci-biology/scaffold_builder/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">downloads</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild b/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild deleted file mode 100644 index 9f60e82c6..000000000 --- a/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-r1 - -DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds" -HOMEPAGE=" - https://sourceforge.net/projects/scaffold-b - https://edwards.sdsu.edu/scaffold_builder" -SRC_URI=" - https://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v${PV}.zip - https://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc - https://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - sci-biology/mummer" -DEPEND="${RDEPEND}" -BDEPEND="app-arch/unzip" - -S="${WORKDIR}" - -src_install(){ - echo "#! /usr/bin/env python" > scaffold_builder.pyy || die - cat scaffold_builder.py >> scaffold_builder.pyy || die - mv scaffold_builder.pyy scaffold_builder.py || die - python_foreach_impl python_doscript scaffold_builder.py - dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc - newdoc "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder.pdf -} |