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| author |   David Seifert <soap@gentoo.org> | 2016-04-09 20:26:28 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-04-09 20:57:05 +0200 |
| commit | 1e3f5d88f730c5d04b64095114d2e48c1ec4ba58 (patch) | |
| tree | f067251bfa8ccc7481541eb1a5cab6b955fc9172 /sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch | |
| parent | sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation (diff) | |
| download | gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.gz gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.bz2 gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.zip | |
sci-biology/bowtie: unbundle SeqAn, import Debian patches
* EAPI=6
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch b/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch new file mode 100644 index 000000000000..78b9c01a0462 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch @@ -0,0 +1,17 @@ +Description: Change class name of _Context_LSS + New version 1.4 of SeQan uses a different name of the class. +Forwarded: no +Author: Gert Wollny <gw.fossdev@gmail.com> +Last-Update: 2014-100-06 + +--- a/diff_sample.h ++++ b/diff_sample.h +@@ -856,7 +856,7 @@ void DifferenceCoverSample<TStr>::build( + { + Timer timer(cout, " Invoking Larsson-Sadakane on ranks time: ", this->verbose()); + VMSG_NL(" Invoking Larsson-Sadakane on ranks"); +- _Context_LSS<TIndexOff> c; ++ ContextLss_<TIndexOff> c; + c.suffixsort( + (TIndexOff*)begin(_isaPrime, Standard()), + (TIndexOff*)begin(sPrime, Standard()), |