diff options
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch b/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch new file mode 100644 index 000000000000..78b9c01a0462 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-_ContextLss-1.1-1.4.patch @@ -0,0 +1,17 @@ +Description: Change class name of _Context_LSS + New version 1.4 of SeQan uses a different name of the class. +Forwarded: no +Author: Gert Wollny <gw.fossdev@gmail.com> +Last-Update: 2014-100-06 + +--- a/diff_sample.h ++++ b/diff_sample.h +@@ -856,7 +856,7 @@ void DifferenceCoverSample<TStr>::build( + { + Timer timer(cout, " Invoking Larsson-Sadakane on ranks time: ", this->verbose()); + VMSG_NL(" Invoking Larsson-Sadakane on ranks"); +- _Context_LSS<TIndexOff> c; ++ ContextLss_<TIndexOff> c; + c.suffixsort( + (TIndexOff*)begin(_isaPrime, Standard()), + (TIndexOff*)begin(sPrime, Standard()), |