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author | David Seifert <soap@gentoo.org> | 2016-04-09 20:26:28 +0200 |
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committer | David Seifert <soap@gentoo.org> | 2016-04-09 20:57:05 +0200 |
commit | 1e3f5d88f730c5d04b64095114d2e48c1ec4ba58 (patch) | |
tree | f067251bfa8ccc7481541eb1a5cab6b955fc9172 /sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch | |
parent | sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation (diff) | |
download | gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.gz gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.bz2 gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.zip |
sci-biology/bowtie: unbundle SeqAn, import Debian patches
* EAPI=6
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch')
-rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch b/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch new file mode 100644 index 000000000000..54391ae415a3 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch @@ -0,0 +1,27 @@ +Description: Use Debian packaged SeqAn library instead of copy in upstream source +Author: Andreas Tille <tille@debian.org> +Date: 2011-01-30 +Last-Update: 2013-04-18 +Reviewed-by: Ognyan Kulev <ogi@debian.org> + +--- a/Makefile ++++ b/Makefile +@@ -5,9 +5,7 @@ + prefix = /usr/local + bindir = $(prefix)/bin + +-SEQAN_DIR = SeqAn-1.1 +-SEQAN_INC = -I $(SEQAN_DIR) +-INC = $(SEQAN_INC) -I third_party ++INC = `pkg-config --cflags seqan-1.4` + CPP = g++ + CXX = $(CPP) + CC = gcc +@@ -168,7 +166,6 @@ + $(wildcard genomes/NC_008253.fna) \ + $(wildcard reads/e_coli_1000.*) \ + $(wildcard reads/e_coli_1000_*) \ +- SeqAn-1.1 \ + bowtie \ + bowtie-build \ + bowtie-inspect \ |