diff options
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch b/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch new file mode 100644 index 000000000000..54391ae415a3 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-unbundle-seqan.patch @@ -0,0 +1,27 @@ +Description: Use Debian packaged SeqAn library instead of copy in upstream source +Author: Andreas Tille <tille@debian.org> +Date: 2011-01-30 +Last-Update: 2013-04-18 +Reviewed-by: Ognyan Kulev <ogi@debian.org> + +--- a/Makefile ++++ b/Makefile +@@ -5,9 +5,7 @@ + prefix = /usr/local + bindir = $(prefix)/bin + +-SEQAN_DIR = SeqAn-1.1 +-SEQAN_INC = -I $(SEQAN_DIR) +-INC = $(SEQAN_INC) -I third_party ++INC = `pkg-config --cflags seqan-1.4` + CPP = g++ + CXX = $(CPP) + CC = gcc +@@ -168,7 +166,6 @@ + $(wildcard genomes/NC_008253.fna) \ + $(wildcard reads/e_coli_1000.*) \ + $(wildcard reads/e_coli_1000_*) \ +- SeqAn-1.1 \ + bowtie \ + bowtie-build \ + bowtie-inspect \ |