proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 57 insertions, 0 deletions

diff --git a/sci-libs/rosetta-fragments/rosetta-fragments-3.1-r1.ebuild b/sci-libs/rosetta-fragments/rosetta-fragments-3.1-r1.ebuild
new file mode 100644
index 000000000000..c659931015d9
--- /dev/null
+++ b/sci-libs/rosetta-fragments/rosetta-fragments-3.1-r1.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils flag-o-matic prefix toolchain-funcs
+
+DESCRIPTION="Fragment library for rosetta"
+HOMEPAGE="http://www.rosettacommons.org"
+SRC_URI="rosetta3.1_fragments.tgz"
+
+LICENSE="rosetta"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND=""
+RDEPEND="
+	sci-biology/ncbi-tools
+	|| ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )
+	sci-biology/psipred"
+
+RESTRICT="fetch"
+
+S="${WORKDIR}"/${PN/-/_}
+
+pkg_nofetch() {
+	einfo "Go to ${HOMEPAGE} and get ${PN}.tgz and rename it to ${A}"
+	einfo "which must be placed in ${DISTDIR}"
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-nnmake.patch \
+		"${FILESDIR}"/${P}-chemshift.patch
+	tc-export F77
+	eprefixify nnmake/*.pl
+}
+
+src_compile() {
+	emake -C nnmake
+	emake -C chemshift
+}
+
+src_install() {
+	esvn_clean .
+
+	newbin nnmake/pNNMAKE.gnu pNNMAKE
+	newbin chemshift/pCHEMSHIFT.gnu pCHEMSHIFT
+
+	dobin nnmake/*.pl
+
+	insinto /usr/share/${PN}
+	doins -r *_database
+	dodoc fragments.README nnmake/{nnmake.README,vall/*.pl} chemshift/chemshift.README
+}