diff options
Diffstat (limited to 'sci-biology/clustalw')
-rw-r--r-- | sci-biology/clustalw/Manifest | 2 | ||||
-rw-r--r-- | sci-biology/clustalw/clustalw-1.83-r3.ebuild | 36 | ||||
-rw-r--r-- | sci-biology/clustalw/clustalw-2.1.ebuild | 14 | ||||
-rw-r--r-- | sci-biology/clustalw/files/1.83-as-needed.patch | 17 | ||||
-rw-r--r-- | sci-biology/clustalw/metadata.xml | 5 |
5 files changed, 74 insertions, 0 deletions
diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest new file mode 100644 index 000000000000..7d1b7dca8a7f --- /dev/null +++ b/sci-biology/clustalw/Manifest @@ -0,0 +1,2 @@ +DIST clustalw-2.1.tar.gz 350761 SHA256 e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486 SHA512 659cfe0121015dd2b84578b1a0a7f016fc944de155686b9bdef31122200a21e792203f3a6ab93a31676a50ffb70858b506ceb7ac27d921189a8381dbe0887921 WHIRLPOOL 93158f400cbdf11ecddcac15b5b4cee9af61d9b933f7100ad18d01d346de54c6bad5a9a12fe5a70a265c92581d3ee9cfbc41b17ee2c2ff80ff2a6658efba5f40 +DIST clustalw1.83.UNIX.tar.gz 166863 SHA256 8b757e02ae95ac0a0dd37db640497aa90f7a13a11784ce2a17f41b64e3059c60 SHA512 c0cc9ebf4c8869be819065546b499b547990342c87425fae8f921a141704343f2a518ecfc2b8bfd527061902825fc5befcb2cd080c83ba887390e48338c9dc1a WHIRLPOOL 5a075579737d8a9ba5f62d6f90feb53a275bd31a8131d1b7d21395cf46cfefbdf4e48563b55734c995b9e3d8f9c37c78ea77f4e48920d64781190645ea36112b diff --git a/sci-biology/clustalw/clustalw-1.83-r3.ebuild b/sci-biology/clustalw/clustalw-1.83-r3.ebuild new file mode 100644 index 000000000000..6047a08ed466 --- /dev/null +++ b/sci-biology/clustalw/clustalw-1.83-r3.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="General purpose multiple alignment program for DNA and proteins" +HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/" +SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz" + +LICENSE="clustalw" +SLOT="1" +KEYWORDS="alpha amd64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" +IUSE="" + +S="${WORKDIR}"/${PN}${PV} + +src_prepare() { + epatch "${FILESDIR}"/${PV}-as-needed.patch + + sed \ + -e "/^CC/s:cc:$(tc-getCC):g" \ + -i makefile || die + sed \ + -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" \ + -i clustalw.c || die +} + +src_install() { + dobin clustalw + dodoc README clustalv.doc clustalw.doc clustalw.ms + insinto /usr/share/doc/${PF} + doins clustalw_help +} diff --git a/sci-biology/clustalw/clustalw-2.1.ebuild b/sci-biology/clustalw/clustalw-2.1.ebuild new file mode 100644 index 000000000000..8664ee3108ec --- /dev/null +++ b/sci-biology/clustalw/clustalw-2.1.ebuild @@ -0,0 +1,14 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +DESCRIPTION="General purpose multiple alignment program for DNA and proteins" +HOMEPAGE="http://www.clustal.org/" +SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz" + +LICENSE="GPL-3 LGPL-3" +SLOT="2" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" +IUSE="" diff --git a/sci-biology/clustalw/files/1.83-as-needed.patch b/sci-biology/clustalw/files/1.83-as-needed.patch new file mode 100644 index 000000000000..62b4654cddea --- /dev/null +++ b/sci-biology/clustalw/files/1.83-as-needed.patch @@ -0,0 +1,17 @@ +--- makefile 2003-01-29 09:53:45.000000000 +0100 ++++ makefile.new 2009-08-17 08:33:16.000000000 +0200 +@@ -11,11 +11,11 @@ + HEADERS = general.h clustalw.h + + CC = cc +-CFLAGS = -c -O +-LFLAGS = -O -lm ++CFLAGS += -c ++LIBS = -lm + + clustalw : $(OBJECTS) amenu.o clustalw.o +- $(CC) -o $@ $(OBJECTS) amenu.o clustalw.o $(LFLAGS) ++ $(CC) $(LDFLAGS) -o $@ $(OBJECTS) amenu.o clustalw.o $(LIBS) + + interface.o : interface.c $(HEADERS) param.h + $(CC) $(CFLAGS) $*.c diff --git a/sci-biology/clustalw/metadata.xml b/sci-biology/clustalw/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/clustalw/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> |