1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/infernal/infernal-1.0.2-r1.ebuild b/sci-biology/infernal/infernal-1.0.2-r1.ebuild
new file mode 100644
index 000000000000..3c0ca9aa7b12
--- /dev/null
+++ b/sci-biology/infernal/infernal-1.0.2-r1.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+inherit eutils
+
+DESCRIPTION="Inference of RNA alignments"
+HOMEPAGE="http://infernal.janelia.org/"
+SRC_URI="ftp://selab.janelia.org/pub/software/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE="mpi"
+KEYWORDS="amd64 x86"
+
+DEPEND="mpi? ( virtual/mpi )"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-parallel-build.patch \
+		"${FILESDIR}"/${P}-overflows.patch \
+		"${FILESDIR}"/${P}-perl-5.16-2.patch \
+		"${FILESDIR}"/${P}-ldflags.patch
+}
+
+src_configure() {
+	econf \
+		--prefix="${D}/usr" \
+		$(use_enable mpi)
+}
+
+src_install() {
+	default
+
+	pushd documentation/manpages > /dev/null
+	for i in *;
+		do newman ${i} ${i/.man/.1}
+	done
+	popd > /dev/null
+
+	insinto /usr/share/${PN}
+	doins -r benchmarks tutorial intro matrices
+	dodoc 00README* Userguide.pdf documentation/release-notes/*
+}