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* sci-libs/vtk: further >=dev-libs/pugixml-1.11 fixesSam James2020-12-152-8/+11
| | | | | | | | | | | | | | | * Drop the internal copy of pugixml just in case. * Adapt vtk to the new "proper" CMake config files from pugixml upstream. Note that Aisha Tammy's patch worked for her with CMake 3.19.1 but not for me on 3.17.4 (stable), so this seems to be needed to be safe. Bug: https://bugs.gentoo.org/758611 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: fix finding pugixmlAisha Tammy2020-12-152-0/+360
| | | | | | | | Closes: https://bugs.gentoo.org/758611 Package-Manager: Portage-3.0.11, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc> Closes: https://github.com/gentoo/gentoo/pull/18640 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cddlib: make MY_PV assignment more reliable.Michael Orlitzky2020-12-141-3/+4
| | | | | | | | | | | François Bissey came up with a better way (using bash substrings) to compute MY_PV from PV in these ebuilds. It won't work forever, but it should be OK for a few more versions, and the failure mode is nicer than the present one of silently downloading the wrong version. Bug: https://bugs.gentoo.org/759520 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fftw: Sync live ebuildDavid Seifert2020-12-141-18/+15
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/fftw: Version bump to 3.3.9David Seifert2020-12-142-0/+184
| | | | | | | Bug: https://bugs.gentoo.org/694088 Closes: https://bugs.gentoo.org/759970 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/nlopt: arm64 keyworded (bug #757849)Sam James2020-12-141-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libigl: new ebuildDennis Lamm2020-12-133-0/+69
| | | | | | Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/18638 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/fftw: s390 keyworded (bug #759745)Sam James2020-12-131-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: ppc keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: ppc keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: ppc64 keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: ppc64 keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cddlib: new 094m revision to install the correct version.Michael Orlitzky2020-12-122-1/+2
| | | | | | | | | | There's an internal variable in this ebuild that needs to be updated for every new version... and wasn't. Thanks to Jouni Kosonen who noticed the mistake. Closes: https://bugs.gentoo.org/759520 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/taucs: Remove support for dev-lang/cilkDavid Seifert2020-12-113-58/+26
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/votca-tools: version bump to v1.6.3Christoph Junghans2020-12-102-0/+45
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/htslib: Remove old 1.9David Seifert2020-12-102-46/+0
| | | | | | | Closes: https://bugs.gentoo.org/725270 Closes: https://github.com/gentoo/gentoo/pull/18592 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/mkl-rt: Remove last-rited pkgMichał Górny2020-12-103-111/+0
| | | | | Closes: https://bugs.gentoo.org/747310 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/gdal: BumpPatrick Lauer2020-12-102-0/+302
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/cddlib: new upstream version 0.94m.Michael Orlitzky2020-12-091-0/+53
| | | | | | | | | | | | This version moves the header files to a soon-to-be-standard location (so that Debian, Fedora, et cetera don't all have to move them) and is going to break some consumers as a result. For that reason, I opted not to package the previous version right away. This version, however, contains a critical bug fix as well. So users need the option to upgrade. Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/geos: BumpPatrick Lauer2020-12-092-0/+53
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/proj: BumpPatrick Lauer2020-12-092-0/+54
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/fplll: pkgconfig is needed when using qdFrançois Bissey2020-12-081-1/+1
| | | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fplll: new upstream release. Enable qd.François Bissey2020-12-083-0/+34
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/superlu_mt: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/btf: Keyword 1.2.6 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/superlu_mt: Keyword 3.1 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/klu: Keyword 1.3.9 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: Keyword 2.18.2 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: Keyword 5.2.0 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: bump 2.4.0_rc4Jason Zaman2020-12-062-0/+408
| | | | Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: Drop oldJason Zaman2020-12-065-1552/+0
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow-estimator: Drop oldJason Zaman2020-12-064-219/+0
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/gts: Keyword 20121130 riscv, #756115Mikle Kolyada2020-12-041-2/+2
| | | | Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/keras-preprocessing: Drop oldMikle Kolyada2020-12-021-22/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/keras-preprocessing: merge stable keywords (py3.8)Mikle Kolyada2020-12-021-1/+1
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/keras-applications: Drop oldMikle Kolyada2020-12-021-20/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/keras-applications: merge stable keywords (py3.8)Mikle Kolyada2020-12-021-1/+1
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/med: drop oldBernd Waibel2020-12-013-173/+0
| | | | | | | Package-Manager: Portage-3.0.10, Repoman-3.0.2 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/18408 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/med: bump to 4.1.0Bernd Waibel2020-12-014-0/+175
| | | | | | | Closes: https://bugs.gentoo.org/756208 Package-Manager: Portage-3.0.10, Repoman-3.0.2 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* Revert "sci-libs/shapely: drop old"Matt Turner2020-11-304-0/+115
| | | | | | | | This reverts commit 55a17758608de9e682f47716efa2ee0bab6c71f9. That commit broke the tree, as CI forewarned. Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/gsl: drop to ~hppaRolf Eike Beer2020-11-301-1/+1
| | | | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/shapely: drop oldDennis Lamm2020-11-304-115/+0
| | | | | | Signed-off-by: Dennis Lamm <expeditoneer@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/18451 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/plplot: migrate to lua-single.eclassMarek Szuba2020-11-291-0/+298
| | | | | | | | | Same as with Python, upstream does not support installing Lua bindings for multiple implementations. Seeing as their documentation does not mention any versions of Lua newer than 5.1, no big deal. Closes: https://bugs.gentoo.org/752849 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/mathgl: bump to 2.4.4Marek Szuba2020-11-292-0/+159
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/mathgl: drop USE=lua supportMarek Szuba2020-11-291-3/+1
| | | | | | | | | | | | It had a missing build-time dependency on dev-lang/swig, and having fixed this I found out that even with unslotted Lua, it: - installs the module directly into /usr/lib64 instead of the correct cmod directory, - has the module linked against liblua, which is a huge no-no, and - fails to load (even when moved to the correct directory) due to undefined symbols. Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/tensorflow: bump 2.4.0_rc3Jason Zaman2020-11-282-3/+3
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/indilib: 1.8.7 version bumpAndreas Sturmlechner2020-11-272-0/+57
| | | | | Package-Manager: Portage-3.0.10, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scikit-learn: ppc64 keyworded (bug #754153)Sam James2020-11-261-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>