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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 10:14:09 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 10:14:09 +0100 |
| commit | 28a4553de32754b0a5bba92424537bb31bd72e1f (patch) | |
| tree | 107f0b39eca0badab8eb2d809c102e4ef07545f9 | |
| parent | sci-biology/trinityrnaseq: version bump 2.11.0 (diff) | |
| download | sci-28a4553d.tar.gz sci-28a4553d.tar.bz2 sci-28a4553d.zip | |
sci-biology/Trinotate: version bump 3.2.1
no keywords, because dep trinityrnaseq is missing them
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/Trinotate/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/Trinotate/Trinotate-3.2.1.ebuild (renamed from sci-biology/Trinotate/Trinotate-2.0.1.ebuild) | 19 |
2 files changed, 11 insertions, 10 deletions
diff --git a/sci-biology/Trinotate/Manifest b/sci-biology/Trinotate/Manifest index 9fa9b8c64..30ecd61fa 100644 --- a/sci-biology/Trinotate/Manifest +++ b/sci-biology/Trinotate/Manifest @@ -1 +1 @@ -DIST Trinotate-2.0.1.tar.gz 29226683 BLAKE2B 427b9deb88729b870bca2b617af5cc14a4e2cfcee0e300eef35013e851c58009e1ac6ca3f5d699ea133aec2ab6a2b0de98df09d763a349c58d3fd8990db37a40 SHA512 389ae53c53910b26cc78578cd3803cf14925964e2209e1baabdce78f3a2a73d064f6484e0355cc9597f4cd13ec09ba93da97b19cdc5646fb9f8f4ab91fbc98db +DIST Trinotate-3.2.1.tar.gz 29794455 BLAKE2B b630b4750540aeefaed598d34038ebc4bf0147f998d9a45038759b1f02cd210835b88cdc7e8e5b8e194ade05b410f8e76ea562c09dcbf09bfa56cfffafa207c3 SHA512 0c2c5021156651644cfcec09bdd19f45c4dd5ab5dd63effbacca3ffc13a32ff3b2050d8fe860e4302ade142f350c895303925542aa730c16abe0721654f8cad7 diff --git a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild index 13dd775aa..85807d4a0 100644 --- a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild +++ b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild @@ -1,25 +1,24 @@ # Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs +inherit perl-module toolchain-funcs DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes" -HOMEPAGE="http://trinotate.github.io" -SRC_URI="https://github.com/Trinotate/Trinotate/archive/v${PV}.tar.gz -> ${P}.tar.gz" +HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki" +SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD-BroadInstitute" SLOT="0" KEYWORDS="" -IUSE="" DEPEND="" RDEPEND="${DEPEND} sci-biology/ncbi-tools++ sci-biology/trinityrnaseq - sci-biology/TransDecoder" + sci-biology/TransDecoder +" # http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer # >=sci-biology/rnammer-2.3.2 @@ -33,12 +32,14 @@ RDEPEND="${DEPEND} # In the 'rnammer' software configuration, edit the rnammer script to point # $HMMSEARCH_BINARY = "/path/to/hmmsearch2"; +S="${WORKDIR}/${PN}-${PN}-v${PV}" + src_install(){ perl_set_version dobin Trinotate insinto /usr/share/"${PN}" - doins -r admin java sample_data util TrinotateWeb + doins -r admin sample_data util TrinotateWeb insinto ${VENDOR_LIB}/${PN} doins -r PerlLib/* - dodoc Release.Notes + dodoc notes README.md README.txt Changelog.txt } |